MS002210 (gene) Bitter gourd (TR) v1

Overview


Name	MS002210
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 3240542 .. 3240745 (-)
RNA-Seq Expression	MS002210
Synteny	MS002210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTGGCATGCGTGTGGGAGGAGAAAGAGAAAGAGCTCGGGAGGCAACAGGCTCCGGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTGGAGAGGCGATGGAAGCTCTGTTTCCTCCCGCTCTGCCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGCTCTCGCCGCCTCGAATTGTGCCACTGG

mRNA sequence

ATGTGGCTGGCATGCGTGTGGGAGGAGAAAGAGAAAGAGCTCGGGAGGCAACAGGCTCCGGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTGGAGAGGCGATGGAAGCTCTGTTTCCTCCCGCTCTGCCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGCTCTCGCCGCCTCGAATTGTGCCACTGG

Coding sequence (CDS)

ATGTGGCTGGCATGCGTGTGGGAGGAGAAAGAGAAAGAGCTCGGGAGGCAACAGGCTCCGGGAACTTGCCCTTTCTGTCAAGGCAAAGTGTACGCCATTGATGTGGAGAGGCGATGGAAGCTCTGTTTCCTCCCGCTCTGCCTCAAGATCAAGAGGAAGTATCTCTGTACTCTCTGCTCTCGCCGCCTCGAATTGTGCCACTGG

Protein sequence

MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCSRRLELCHW

Homology

[Close]

BLAST of MS002210 vs. NCBI nr
Match: XP_022135123.1 (uncharacterized protein LOC111007177 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 5.2e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. NCBI nr
Match: XP_038879931.1 (uncharacterized protein LOC120071640 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. NCBI nr
Match: XP_004146338.1 (uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED: uncharacterized protein LOC103494230 [Cucumis melo] >KAA0058206.1 uncharacterized protein E6C27_scaffold274G005270 [Cucumis melo var. makuwa] >KGN65493.1 hypothetical protein Csa_019621 [Cucumis sativus] >TYK28570.1 uncharacterized protein E5676_scaffold629G002170 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 4.4e-34
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. NCBI nr
Match: XP_022921752.1 (uncharacterized protein LOC111429909 [Cucurbita moschata])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKEKELGRQQAPGTCPFC+GKV+AIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. NCBI nr
Match: KAG6589683.1 (hypothetical protein SDJN03_15106, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKEKELGRQQAPGTCPFC+GKV+AIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. ExPASy TrEMBL
Match: A0A6J1C3X8 (uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007177 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. ExPASy TrEMBL
Match: A0A5D3DZA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002170 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. ExPASy TrEMBL
Match: A0A0A0LUS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. ExPASy TrEMBL
Match: A0A1S3BWI2 (uncharacterized protein LOC103494230 OS=Cucumis melo OX=3656 GN=LOC103494230 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVWEEKE+ELGRQQAPGTCPFCQGKVYAIDVER+WKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. ExPASy TrEMBL
Match: A0A6J1E1C1 (uncharacterized protein LOC111429909 OS=Cucurbita moschata OX=3662 GN=LOC111429909 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          MWLACVW+EKEKELGRQQAPGTCPFC+GKV+AIDVERRWKLCFLPLCLKIKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of MS002210 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-22
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L C+ +E+E ELGRQQAPG+CP+C GKV  +DVER+W  CF+PLC KIKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RRLELCH 68
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]

BLAST of MS002210 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V+ E++ ELGRQQAPG CP+C GKV A+D+E +W  CFLPLC K+KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RRLEL 66
          R L L
Sbjct: 61 RHLVL 65

[Close]

BLAST of MS002210 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60
          M L  V ++ E+ +GR  APG CP+C G V  +DV  +W+ CF+PL  K KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RRL 64
          +RL
Sbjct: 61 KRL 63

The following BLAST results are available for this feature:

BLAST of MS002210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135123.1	5.2e-35	100.00	uncharacterized protein LOC111007177 [Momordica charantia]	[more]
XP_038879931.1	1.2e-34	98.53	uncharacterized protein LOC120071640 [Benincasa hispida]	[more]
XP_004146338.1	4.4e-34	97.06	uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED...	[more]
XP_022921752.1	1.3e-33	95.59	uncharacterized protein LOC111429909 [Cucurbita moschata]	[more]
KAG6589683.1	1.3e-33	95.59	hypothetical protein SDJN03_15106, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS002210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3X8	2.5e-35	100.00	uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3DZA2	2.1e-34	97.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LUS9	2.1e-34	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1	[more]
A0A1S3BWI2	2.1e-34	97.06	uncharacterized protein LOC103494230 OS=Cucumis melo OX=3656 GN=LOC103494230 PE=...	[more]
A0A6J1E1C1	6.2e-34	95.59	uncharacterized protein LOC111429909 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]

BLAST of MS002210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57123.1	2.4e-22	64.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	1.1e-19	60.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.1	1.6e-13	46.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320:SF13	SUBFAMILY NOT NAMED	coord: 6..65
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002210.1	MS002210.1	mRNA