MS002186 (gene) Bitter gourd (TR) v1

Overview


Name	MS002186
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Neuronal acetylcholine receptor subunit alpha
Location	scaffold30: 3044637 .. 3044846 (-)
RNA-Seq Expression	MS002186
Synteny	MS002186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGAGGAATGGAGGCGCAGAAGAACAAATTTATCGAGGATTGGGGTGCTGCTAGAGAAAATCTAGAGCATAACTTCCGCTGGACTCGCCGCAACTTCGCTCTCGTGGGTATCTTTGGCATCGCCATCCCCCTCCTCGTTTACAAAGGCATCGTCAGGGAATTTGTAATCTCATCGCTCTCTTTCTCCTATTACCGTCTTTTCCTG

mRNA sequence

ATGGGCGGAGGAATGGAGGCGCAGAAGAACAAATTTATCGAGGATTGGGGTGCTGCTAGAGAAAATCTAGAGCATAACTTCCGCTGGACTCGCCGCAACTTCGCTCTCGTGGGTATCTTTGGCATCGCCATCCCCCTCCTCGTTTACAAAGGCATCGTCAGGGAATTTGTAATCTCATCGCTCTCTTTCTCCTATTACCGTCTTTTCCTG

Coding sequence (CDS)

ATGGGCGGAGGAATGGAGGCGCAGAAGAACAAATTTATCGAGGATTGGGGTGCTGCTAGAGAAAATCTAGAGCATAACTTCCGCTGGACTCGCCGCAACTTCGCTCTCGTGGGTATCTTTGGCATCGCCATCCCCCTCCTCGTTTACAAAGGCATCGTCAGGGAATTTGTAATCTCATCGCTCTCTTTCTCCTATTACCGTCTTTTCCTG

Protein sequence

MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISSLSFSYYRLFL

Homology

[Close]

BLAST of MS002186 vs. NCBI nr
Match: KAG7023344.1 (hypothetical protein SDJN02_14369, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISS 60
          MGGGMEA KNKFIEDW +ARENLEHNFRWTRRNFALVG+FGIA+PLLVYKGIVREFVIS 
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISF 60

Query: 61 LSFSYYRLFL 71
          LSF +  LFL
Sbjct: 61 LSFLFGDLFL 70

[Close]

BLAST of MS002186 vs. NCBI nr
Match: XP_022135572.1 (uncharacterized protein LOC111007489 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]

BLAST of MS002186 vs. NCBI nr
Match: XP_022930869.1 (uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 uncharacterized protein LOC111469278 [Cucurbita maxima] >XP_023529258.1 uncharacterized protein LOC111792156 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGMEAQKN+FIEDWG+ARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]

BLAST of MS002186 vs. NCBI nr
Match: CAF1865501.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISS 60
          MGGGME  KNKFIEDWG+ARENLEHNFRWTRRNFAL+GIFGIA+P++VYKGIV++FV  S
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFVSFS 60

Query: 61 LSFSY 66
          LS S+
Sbjct: 61 LSLSH 65

[Close]

BLAST of MS002186 vs. NCBI nr
Match: KZM96549.1 (hypothetical protein DCAR_019791 [Daucus carota subsp. sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISS 60
          MGGGMEA KN++IE+WG+ARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIV+EFVIS 
Sbjct: 1  MGGGMEANKNRWIEEWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVKEFVISR 60

Query: 61 LSF 64
          L F
Sbjct: 61 LLF 63

[Close]

BLAST of MS002186 vs. ExPASy TrEMBL
Match: A0A6J1C330 (uncharacterized protein LOC111007489 OS=Momordica charantia OX=3673 GN=LOC111007489 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]

BLAST of MS002186 vs. ExPASy TrEMBL
Match: A0A6J1I518 (uncharacterized protein LOC111469278 OS=Cucurbita maxima OX=3661 GN=LOC111469278 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGMEAQKN+FIEDWG+ARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]

BLAST of MS002186 vs. ExPASy TrEMBL
Match: A0A6J1ESQ6 (uncharacterized protein LOC111437222 OS=Cucurbita moschata OX=3662 GN=LOC111437222 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGMEAQKN+FIEDWG+ARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]

BLAST of MS002186 vs. ExPASy TrEMBL
Match: A0A164ZX19 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019791 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISS 60
          MGGGMEA KN++IE+WG+ARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIV+EFVIS 
Sbjct: 1  MGGGMEANKNRWIEEWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVKEFVISR 60

Query: 61 LSF 64
          L F
Sbjct: 61 LLF 63

[Close]

BLAST of MS002186 vs. ExPASy TrEMBL
Match: A0A067LBC8 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26808 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFVISS 60
          MGGGME  KNKFIEDWGAARENLEHNFRWTRRNFAL+G+FGIA+P+ VY+GIV+EFV SS
Sbjct: 1  MGGGMETNKNKFIEDWGAARENLEHNFRWTRRNFALIGLFGIALPIFVYRGIVKEFVNSS 60

Query: 61 LSFS 65
           S S
Sbjct: 61 FSVS 64

[Close]

BLAST of MS002186 vs. TAIR 10
Match: AT2G31490.1 (unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 7.0e-25
Identity = 47/56 (83.93%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MGGGMEAQKNKFIEDWGAARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 57
          MGGGME  KNKFIEDWG+ARENLEHNFRWTRRNFAL+GIFGIA+P++VYKGIV++F
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDF 56

The following BLAST results are available for this feature:

BLAST of MS002186 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023344.1	3.9e-25	85.71	hypothetical protein SDJN02_14369, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022135572.1	9.5e-24	100.00	uncharacterized protein LOC111007489 [Momordica charantia]	[more]
XP_022930869.1	4.7e-23	96.43	uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 unchar...	[more]
CAF1865501.1	1.1e-22	80.00	unnamed protein product [Brassica napus]	[more]
KZM96549.1	1.1e-22	85.71	hypothetical protein DCAR_019791 [Daucus carota subsp. sativus]	[more]

BLAST of MS002186 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C330	4.6e-24	100.00	uncharacterized protein LOC111007489 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1I518	2.3e-23	96.43	uncharacterized protein LOC111469278 OS=Cucurbita maxima OX=3661 GN=LOC111469278...	[more]
A0A6J1ESQ6	2.3e-23	96.43	uncharacterized protein LOC111437222 OS=Cucurbita moschata OX=3662 GN=LOC1114372...	[more]
A0A164ZX19	5.1e-23	85.71	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019791 ...	[more]
A0A067LBC8	8.7e-23	81.25	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26808 PE=4 SV=1	[more]

BLAST of MS002186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31490.1	7.0e-25	83.93	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479:SF4	UNNAMED PRODUCT	coord: 1..60
None	No IPR available	PANTHER	PTHR35479	UNNAMED PRODUCT	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002186.1	MS002186.1	mRNA