MS002169 (gene) Bitter gourd (TR) v1

Overview


Name	MS002169
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Leucine rich repeat 4
Location	scaffold30: 2924297 .. 2924539 (+)
RNA-Seq Expression	MS002169
Synteny	MS002169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTCGTTGAACTGGAGGGGGCTTTATGTGTAACTTTATTTTTAGAATTTGCAACATCAGAGTTCTCCTTAATCCCCATTGAGGAGGTCGCCACCGTGAAGAAGAAGGATAAGTCATCGTCGCGTCATATAAAATGGAAATTAAAGTGGTTATGTGAAAAGAGTCTACTGAATTTCATTGCACTGGCGAAGGCAATCCACCTGGGAAGTAAGGAGTCCCCTTTGCCTGTAAGATATGTATCA

mRNA sequence

CAGGTCGTTGAACTGGAGGGGGCTTTATGTGTAACTTTATTTTTAGAATTTGCAACATCAGAGTTCTCCTTAATCCCCATTGAGGAGGTCGCCACCGTGAAGAAGAAGGATAAGTCATCGTCGCGTCATATAAAATGGAAATTAAAGTGGTTATGTGAAAAGAGTCTACTGAATTTCATTGCACTGGCGAAGGCAATCCACCTGGGAAGTAAGGAGTCCCCTTTGCCTGTAAGATATGTATCA

Coding sequence (CDS)

CAGGTCGTTGAACTGGAGGGGGCTTTATGTGTAACTTTATTTTTAGAATTTGCAACATCAGAGTTCTCCTTAATCCCCATTGAGGAGGTCGCCACCGTGAAGAAGAAGGATAAGTCATCGTCGCGTCATATAAAATGGAAATTAAAGTGGTTATGTGAAAAGAGTCTACTGAATTTCATTGCACTGGCGAAGGCAATCCACCTGGGAAGTAAGGAGTCCCCTTTGCCTGTAAGATATGTATCA

Protein sequence

QVVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIALAKAIHLGSKESPLPVRYVS

Homology

[Close]

BLAST of MS002169 vs. NCBI nr
Match: XP_022134882.1 (uncharacterized protein LOC111007033 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 2   VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA 61
           VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA
Sbjct: 827 VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA 886

Query: 62  LAKAIHLGSKESPLPVRYVS 82
           LAKAIHLGSKESPLPVRYVS
Sbjct: 887 LAKAIHLGSKESPLPVRYVS 906

[Close]

BLAST of MS002169 vs. NCBI nr
Match: XP_022933984.1 (uncharacterized protein LOC111441231 isoform X1 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1010 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFI 1069

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1070 ALAKAIHLGSKESPLPVRYLS 1090

[Close]

BLAST of MS002169 vs. NCBI nr
Match: XP_023530675.1 (uncharacterized protein LOC111793156 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1010 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFI 1069

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1070 ALAKAIHLGSKESPLPVRYLS 1090

[Close]

BLAST of MS002169 vs. NCBI nr
Match: KAG7021659.1 (Serine/threonine-protein kinase 11-interacting protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1010 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKEASSLCSTKWKIKWFHEENLLNFI 1069

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1070 ALAKAIHLGSKESPLPVRYLS 1090

[Close]

BLAST of MS002169 vs. NCBI nr
Match: XP_023530676.1 (uncharacterized protein LOC111793156 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1000 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFI 1059

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1060 ALAKAIHLGSKESPLPVRYLS 1080

[Close]

BLAST of MS002169 vs. ExPASy TrEMBL
Match: A0A6J1C0W0 (uncharacterized protein LOC111007033 OS=Momordica charantia OX=3673 GN=LOC111007033 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 2   VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA 61
           VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA
Sbjct: 827 VVELEGALCVTLFLEFATSEFSLIPIEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFIA 886

Query: 62  LAKAIHLGSKESPLPVRYVS 82
           LAKAIHLGSKESPLPVRYVS
Sbjct: 887 LAKAIHLGSKESPLPVRYVS 906

[Close]

BLAST of MS002169 vs. ExPASy TrEMBL
Match: A0A6J1F1A1 (uncharacterized protein LOC111441231 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441231 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1010 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFI 1069

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1070 ALAKAIHLGSKESPLPVRYLS 1090

[Close]

BLAST of MS002169 vs. ExPASy TrEMBL
Match: A0A6J1F0J7 (uncharacterized protein LOC111441231 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441231 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++LLNFI
Sbjct: 1000 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLLNFI 1059

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1060 ALAKAIHLGSKESPLPVRYLS 1080

[Close]

BLAST of MS002169 vs. ExPASy TrEMBL
Match: A0A6J1IDJ8 (uncharacterized protein LOC111472125 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472125 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++L+NFI
Sbjct: 1001 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLVNFI 1060

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1061 ALAKAIHLGSKESPLPVRYLS 1081

[Close]

BLAST of MS002169 vs. ExPASy TrEMBL
Match: A0A6J1I7W6 (uncharacterized protein LOC111472125 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472125 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 2    VVELEGALCVTLFLEFATSEFSLIP-IEEVATVKKKDKSSSRHIKWKLKWLCEKSLLNFI 61
            VV+++GALCVTL L+FA+SEFSL+P  +E  T  KK+ SS    KWK+KW  E++L+NFI
Sbjct: 1011 VVDVKGALCVTLSLKFASSEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLVNFI 1070

Query: 62   ALAKAIHLGSKESPLPVRYVS 82
            ALAKAIHLGSKESPLPVRY+S
Sbjct: 1071 ALAKAIHLGSKESPLPVRYLS 1091

[Close]

BLAST of MS002169 vs. TAIR 10
Match: AT1G48540.1 (Outer arm dynein light chain 1 protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 20   SEFSLIPIEE---VATVKKKDKSSSRHIKWKLKWLCEKSLLNFIALAKAIHLGSKESPLP 79
            SE S + IE    V ++K K+K +   + WKLKW   ++ + F AL KA+H  S + PL 
Sbjct: 999  SEISEMIIETQGIVVSLKIKEKRTVDLVTWKLKWCSIENAIKFAALLKALHPNSPQWPLA 1058

[Close]

BLAST of MS002169 vs. TAIR 10
Match: AT1G48540.2 (Outer arm dynein light chain 1 protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 36   KDKSSSRHIKWKLKWLCEKSLLNFIALAKAIHLGSKESPLPVRY 80
            K+K +   + WKLKW   ++ + F AL KA+H  S + PL VRY
Sbjct: 1006 KEKRTVDLVTWKLKWCSIENAIKFAALLKALHPNSPQWPLAVRY 1049

The following BLAST results are available for this feature:

BLAST of MS002169 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134882.1	4.8e-35	100.00	uncharacterized protein LOC111007033 [Momordica charantia]	[more]
XP_022933984.1	2.8e-19	67.90	uncharacterized protein LOC111441231 isoform X1 [Cucurbita moschata]	[more]
XP_023530675.1	2.8e-19	67.90	uncharacterized protein LOC111793156 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7021659.1	2.8e-19	67.90	Serine/threonine-protein kinase 11-interacting protein [Cucurbita argyrosperma s...	[more]
XP_023530676.1	2.8e-19	67.90	uncharacterized protein LOC111793156 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS002169 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0W0	2.3e-35	100.00	uncharacterized protein LOC111007033 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1F1A1	1.4e-19	67.90	uncharacterized protein LOC111441231 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F0J7	1.4e-19	67.90	uncharacterized protein LOC111441231 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IDJ8	3.0e-19	66.67	uncharacterized protein LOC111472125 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I7W6	3.0e-19	66.67	uncharacterized protein LOC111472125 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS002169 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48540.1	4.2e-05	41.27	Outer arm dynein light chain 1 protein	[more]
AT1G48540.2	3.6e-04	43.18	Outer arm dynein light chain 1 protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002169.1	MS002169.1	mRNA