MS002164 (gene) Bitter gourd (TR) v1

Overview


Name	MS002164
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L19
Location	scaffold30: 2880103 .. 2880908 (+)
RNA-Seq Expression	MS002164
Synteny	MS002164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCCCTGGCCCTACAGAAGCGGCTCGCCGCCAGCAGTCTTGCCTGCGGCAAACGTCGAGTATGGCTCGATCCCAATGAGATCACCACTGTCTCATTAGCCAATTCTAGTATGTACAGCAAACTTTTCTAGAATTATCTTTTGGTTTCTCTGTCTAACTTGGTAGTCATGAAGTTTGCTTATGAGTGCTCATGCATGTCAAAGAGGAAAAGAGATGCAAAGGTTTAGCCAACATCAACAATTTATTTAACCATATACAGATTTAATAAATGACTGAACAATGAATTATTTTTTAGTTTCATGACAGAATTTTGCATCTGATACTGACAATTCAAAATGGCAAAATAGTATTTAAATGAATACAACACATTGTAACTAGAAAACACTTATTACTTGCAGGAATGAGCATTAGGAAGCTCATAAAAGATGGCTTGATCATCAAGAGGTTGACGAAAATCCGCTCAAAAGCCCGATCTCGGCAAACACATGAAGCAAAAGCGAGAGGACGACATTCTGGGTACGGAAAACGAAGAGGAACAAAGGAGGCAAGGTTACCCACAAAGCTACTATGGATGAGAAGAATGAGGGTCCTCAGAAGATTACTGCGGAAATACCGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAGAAACAAACGTGTGCTAATGGAAAACATTCACAAGGTCAGGGCTGAAAAAGCATCAGAAAATACCCTCGCTGTTCAGATTGAGGCCAAAAGAGCAATAAATAGTAAAGGAACAACGACA

mRNA sequence

ATGGTGTCCCTGGCCCTACAGAAGCGGCTCGCCGCCAGCAGTCTTGCCTGCGGCAAACGTCGAGTATGGCTCGATCCCAATGAGATCACCACTGTCTCATTAGCCAATTCTAGAATGAGCATTAGGAAGCTCATAAAAGATGGCTTGATCATCAAGAGGTTGACGAAAATCCGCTCAAAAGCCCGATCTCGGCAAACACATGAAGCAAAAGCGAGAGGACGACATTCTGGGTACGGAAAACGAAGAGGAACAAAGGAGGCAAGGTTACCCACAAAGCTACTATGGATGAGAAGAATGAGGGTCCTCAGAAGATTACTGCGGAAATACCGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAGAAACAAACGTGTGCTAATGGAAAACATTCACAAGGTCAGGGCTGAAAAAGCATCAGAAAATACCCTCGCTGTTCAGATTGAGGCCAAAAGAGCAATAAATAGTAAAGGAACAACGACA

Coding sequence (CDS)

ATGGTGTCCCTGGCCCTACAGAAGCGGCTCGCCGCCAGCAGTCTTGCCTGCGGCAAACGTCGAGTATGGCTCGATCCCAATGAGATCACCACTGTCTCATTAGCCAATTCTAGAATGAGCATTAGGAAGCTCATAAAAGATGGCTTGATCATCAAGAGGTTGACGAAAATCCGCTCAAAAGCCCGATCTCGGCAAACACATGAAGCAAAAGCGAGAGGACGACATTCTGGGTACGGAAAACGAAGAGGAACAAAGGAGGCAAGGTTACCCACAAAGCTACTATGGATGAGAAGAATGAGGGTCCTCAGAAGATTACTGCGGAAATACCGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAGAAACAAACGTGTGCTAATGGAAAACATTCACAAGGTCAGGGCTGAAAAAGCATCAGAAAATACCCTCGCTGTTCAGATTGAGGCCAAAAGAGCAATAAATAGTAAAGGAACAACGACA

Protein sequence

MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSKARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT

Homology

[Close]

BLAST of MS002164 vs. NCBI nr
Match: XP_022135037.1 (60S ribosomal protein L19-3-like [Momordica charantia])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 172

[Close]

BLAST of MS002164 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.3e-71
Identity = 148/172 (86.05%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE  T+SLANSRMSIRKLIKDGLIIKR+T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEAK+RGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMY RVKGNVY+NKRVLMENIHKV++E ASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. NCBI nr
Match: KAG7023328.1 (60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 5.1e-71
Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE  T+SLANSRMSIRKLIKDG IIKR T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEAK+RG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 278.1 bits (710), Expect = 5.1e-71
Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKR+VWLDPNE  T+SLANSRMSIRKLIKDG IIKR T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEAK+RGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 274.6 bits (701), Expect = 5.7e-70
Identity = 145/172 (84.30%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE   +SLANSRMSIRKLIKDGLIIKR T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+ EAK+RGRHSGYGKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           H+MY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 229.6 bits (584), Expect = 2.7e-59
Identity = 118/166 (71.08%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+RQ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY++VKGNV++NKRVLME+IHK +AEKA E TL+ Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MS002164 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.0e-59
Identity = 118/166 (71.08%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE + +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY+RVKGNV++NKRVLME+IHK +AEKA E TL+ Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MS002164 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.8e-58
Identity = 115/166 (69.28%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE   +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R  +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY++VKGNV++NKRVLME+IHK++AEKA E TLA Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of MS002164 vs. ExPASy Swiss-Prot
Match: P0DJ60 (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-50
Identity = 105/167 (62.87%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE + +S+ANSR SIRKLIKDGL++KR T I S+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R   EAK +GRH+G GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINS 168
           H+ Y+  KGN+Y+NK VL+E IH  +A+K   + L  Q EA+RA N+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNT 167

[Close]

BLAST of MS002164 vs. ExPASy Swiss-Prot
Match: P36241 (60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-49
Identity = 102/163 (62.58%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           M SL LQKRLAAS L CGK++VWLDPNEI  ++  NSR +IRKLIKDGLIIK+   + S+
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R+  EA+ +GRH G+GKR+GT  AR+PTKLLWM+R RVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKR 164
           H +Y++ KGNV++NKRVLME IHK +AEK     LA Q EA+R
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARR 163

[Close]

BLAST of MS002164 vs. ExPASy TrEMBL
Match: A0A6J1C1I4 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.7e-84
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 172

[Close]

BLAST of MS002164 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.5e-71
Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKR+VWLDPNE  T+SLANSRMSIRKLIKDG IIKR T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEAK+RGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           HQMY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. ExPASy TrEMBL
Match: A0A6J1JJK9 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.8e-70
Identity = 145/172 (84.30%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE   +SLANSRMSIRKLIKDGLIIKR T I SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+ EAK+RGRHSGYGKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 173
           H+MY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 172

[Close]

BLAST of MS002164 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 144/168 (85.71%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE TT+SLANSRMSIRKLIKDGLIIKRLT   SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +RSRQ H+AK+RGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSK 169
           HQMYIRVKGNVY+NKRVLME+IHKV+ EKA E TL++Q+EAKRAINSK
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSK 168

[Close]

BLAST of MS002164 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 144/168 (85.71%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE TT SLANSRMSIRKLIKDGLIIKRLT   SK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +RSRQ H+AK+RGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSK 169
           HQMYIRVKGNVY+NKRVLME+IHKV+AE+A E TL++Q+EAKRAINSK
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSK 168

[Close]

BLAST of MS002164 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-60
Identity = 118/166 (71.08%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+RQ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY++VKGNV++NKRVLME+IHK +AEKA E TL+ Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MS002164 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-60
Identity = 118/166 (71.08%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE + +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY+RVKGNV++NKRVLME+IHK +AEKA E TL+ Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MS002164 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-59
Identity = 115/166 (69.28%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE   +S+ANSR +IRKL+KDG II++ TKI S+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R  +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAIN 167
           H MY++VKGNV++NKRVLME+IHK++AEKA E TLA Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of MS002164 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-10
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 54  LTKIRSKARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECE 113
           +  I   +RSR    A+ + RH+GYGK   T EA         RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSR----ARRKCRHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHI-YHQMYIRVKGNVYRNKRVLMENIHKVRAEK---ASENTLAVQIEAKRAINS 168
           KIDK + YH M+++VKG VY+NK VLME++HK   E+    SE  LA++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

The following BLAST results are available for this feature:

BLAST of MS002164 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135037.1	1.2e-83	100.00	60S ribosomal protein L19-3-like [Momordica charantia]	[more]
XP_023515875.1	2.3e-71	86.05	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]
KAG7023328.1	5.1e-71	85.47	60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022921592.1	5.1e-71	85.47	60S ribosomal protein L19-3-like [Cucurbita moschata]	[more]
XP_022988450.1	5.7e-70	84.30	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]

BLAST of MS002164 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49693	2.7e-59	71.08	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9SRX2	8.0e-59	71.08	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
Q9LUQ6	6.8e-58	69.28	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
P0DJ60	8.9e-50	62.87	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN...	[more]
P36241	1.5e-49	62.58	60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2	[more]

BLAST of MS002164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1I4	5.7e-84	100.00	Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1	[more]
A0A6J1E0X8	2.5e-71	85.47	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1	[more]
A0A6J1JJK9	2.8e-70	84.30	Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1	[more]
A0A1S3BVU0	1.4e-69	85.71	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
A0A5A7UX03	3.0e-69	85.71	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of MS002164 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02230.1	2.0e-60	71.08	Ribosomal protein L19e family protein	[more]
AT1G02780.1	5.7e-60	71.08	Ribosomal protein L19e family protein	[more]
AT3G16780.1	4.8e-59	69.28	Ribosomal protein L19e family protein	[more]
AT4G16030.1	9.2e-10	39.83	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 4.7E-78 score: 275.3
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..144 e-value: 8.1E-57 score: 191.3
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..171 e-value: 2.1E-44 score: 152.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..83
None	No IPR available	PANTHER	PTHR10722:SF5	60S RIBOSOMAL PROTEIN L19-2	coord: 1..168
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 2..56 e-value: 1.1E-24 score: 87.9
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..168
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002164.1	MS002164.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome