MS002137 (gene) Bitter gourd (TR) v1

Overview


Name	MS002137
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
Location	scaffold30: 2637128 .. 2637442 (-)
RNA-Seq Expression	MS002137
Synteny	MS002137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTCCGCCTCATGTGCAGCTATGGCGGCCACATTATCCCCCGCCCCCACGACAAATCCCTCTGCTACGTCGGCGGAGACACCCGCATTGTCGTCGTCGATCGCCATTCCTCCCTCGCCGACCTCTGCATGCGCCTCTCCCGAACCCTCCTCAACGGCCGGCCATTCACCCTCAAGTACCAGCTCCCTCACGAAGATCTCGATTCCCTCATCTCCATTGCGACGGATGAAGATCTCGAGAACATGATCGAAGAGTACGACCGAATCACCATCGCTTCACCCCTGAAGCCTTTACGCATCCGCCTCTTCCTCTTC

mRNA sequence

AAGCTCCGCCTCATGTGCAGCTATGGCGGCCACATTATCCCCCGCCCCCACGACAAATCCCTCTGCTACGTCGGCGGAGACACCCGCATTGTCGTCGTCGATCGCCATTCCTCCCTCGCCGACCTCTGCATGCGCCTCTCCCGAACCCTCCTCAACGGCCGGCCATTCACCCTCAAGTACCAGCTCCCTCACGAAGATCTCGATTCCCTCATCTCCATTGCGACGGATGAAGATCTCGAGAACATGATCGAAGAGTACGACCGAATCACCATCGCTTCACCCCTGAAGCCTTTACGCATCCGCCTCTTCCTCTTC

Coding sequence (CDS)

AAGCTCCGCCTCATGTGCAGCTATGGCGGCCACATTATCCCCCGCCCCCACGACAAATCCCTCTGCTACGTCGGCGGAGACACCCGCATTGTCGTCGTCGATCGCCATTCCTCCCTCGCCGACCTCTGCATGCGCCTCTCCCGAACCCTCCTCAACGGCCGGCCATTCACCCTCAAGTACCAGCTCCCTCACGAAGATCTCGATTCCCTCATCTCCATTGCGACGGATGAAGATCTCGAGAACATGATCGAAGAGTACGACCGAATCACCATCGCTTCACCCCTGAAGCCTTTACGCATCCGCCTCTTCCTCTTC

Protein sequence

KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKYQLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF

Homology

[Close]

BLAST of MS002137 vs. NCBI nr
Match: XP_022134583.1 (uncharacterized protein LOC111006815 [Momordica charantia])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY
Sbjct: 47  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 106

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF
Sbjct: 107 QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 151

[Close]

BLAST of MS002137 vs. NCBI nr
Match: XP_004137546.1 (uncharacterized protein LOC101210340 [Cucumis sativus] >KGN63843.1 hypothetical protein Csa_013965 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 56  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 115

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLFLF
Sbjct: 116 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFLF 160

[Close]

BLAST of MS002137 vs. NCBI nr
Match: KAG6587664.1 (hypothetical protein SDJN03_16229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 58  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 117

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLF+F
Sbjct: 118 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIF 162

[Close]

BLAST of MS002137 vs. NCBI nr
Match: XP_022925527.1 (uncharacterized protein LOC111432842 [Cucurbita moschata])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 58  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 117

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLF+F
Sbjct: 118 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIF 162

[Close]

BLAST of MS002137 vs. NCBI nr
Match: XP_022973326.1 (uncharacterized protein LOC111471889 [Cucurbita maxima])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 58  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 117

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLF+F
Sbjct: 118 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIF 162

[Close]

BLAST of MS002137 vs. ExPASy TrEMBL
Match: A0A6J1C2E1 (uncharacterized protein LOC111006815 OS=Momordica charantia OX=3673 GN=LOC111006815 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY
Sbjct: 47  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 106

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF
Sbjct: 107 QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 151

[Close]

BLAST of MS002137 vs. ExPASy TrEMBL
Match: A0A0A0LPU6 (PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G024270 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.5e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 56  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 115

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLFLF
Sbjct: 116 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFLF 160

[Close]

BLAST of MS002137 vs. ExPASy TrEMBL
Match: A0A6J1I8C4 (uncharacterized protein LOC111471889 OS=Cucurbita maxima OX=3661 GN=LOC111471889 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.0e-52
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 58  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 117

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLF+F
Sbjct: 118 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIF 162

[Close]

BLAST of MS002137 vs. ExPASy TrEMBL
Match: A0A6J1EBX8 (uncharacterized protein LOC111432842 OS=Cucurbita moschata OX=3662 GN=LOC111432842 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.0e-52
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSL+DLCMRLSRTLLNGRPFTLKY
Sbjct: 58  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKY 117

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASPLKPLRIRLF+F
Sbjct: 118 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIF 162

[Close]

BLAST of MS002137 vs. ExPASy TrEMBL
Match: A0A5D3DXZ5 (Ataxin-2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00830 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.9e-51
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHS+L+DLCMRLSRTLLNGRPFTLKY
Sbjct: 56  KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSTLSDLCMRLSRTLLNGRPFTLKY 115

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           QLPHEDLDSLISIATDEDLENMIEEYDRIT+ASP KPLRIRLFLF
Sbjct: 116 QLPHEDLDSLISIATDEDLENMIEEYDRITMASPSKPLRIRLFLF 160

[Close]

BLAST of MS002137 vs. TAIR 10
Match: AT2G01190.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 167.5 bits (423), Expect = 5.6e-42
Identity = 82/106 (77.36%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLR MCSYGGHI+PRPHDKSLCY+GGDTRIVVVDR+SSL  L  RLS TLL+GR FTLKY
Sbjct: 74  KLRFMCSYGGHILPRPHDKSLCYMGGDTRIVVVDRNSSLPSLIARLSNTLLDGRSFTLKY 133

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDR-ITIASPLKPLRIRLFLF 106
           QLP EDLDSLIS+ TDEDL+NMIEEYDR I+ ++  KP R+RLFLF
Sbjct: 134 QLPSEDLDSLISVTTDEDLDNMIEEYDRTISASNSTKPSRLRLFLF 179

[Close]

BLAST of MS002137 vs. TAIR 10
Match: AT3G18230.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-37
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KLRLMCS+GGHI+PRPHDKSL Y GG+TRIVVVDR +SL+ L  RLS  LLNGR FTLKY
Sbjct: 63  KLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSRLSSMLLNGRSFTLKY 122

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDR-ITIASPLKPLRIRLFLF 106
           QLP EDLDSL++I TDEDLENMIEEYDR  + A+     R+RLFLF
Sbjct: 123 QLPSEDLDSLVTITTDEDLENMIEEYDRAASSATATATQRLRLFLF 168

[Close]

BLAST of MS002137 vs. TAIR 10
Match: AT4G05150.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-27
Identity = 56/106 (52.83%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRP-FTLK 60
           ++R MC++GG I+PRP D  LCYVGGD R+V V RH++ A L  +L++  L+G+   ++K
Sbjct: 58  RVRFMCTFGGRILPRPPDNQLCYVGGDNRMVAVHRHTTFASLLSKLAK--LSGKSNISVK 117

Query: 61  YQLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           YQLP+EDLD+LIS++TDED+ENM++EYDR+      +  R+RLFLF
Sbjct: 118 YQLPNEDLDALISVSTDEDVENMMDEYDRVAQNQNPRASRLRLFLF 161

[Close]

BLAST of MS002137 vs. TAIR 10
Match: AT5G09620.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 110.5 bits (275), Expect = 8.1e-25
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLL---NGRPFT 60
           K++LMCSYGG I PRPHD  L YV GDT+I+ VDR      L  +LS       +G   +
Sbjct: 39  KVKLMCSYGGKIQPRPHDNQLTYVNGDTKIMSVDRGIRFPALVSKLSAVCSGGGDGGEIS 98

Query: 61  LKYQLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
            KYQLP EDLD+LIS+  DEDLE+M+ EYDR+   S  KP R+RLFLF
Sbjct: 99  FKYQLPGEDLDALISVTNDEDLEHMMHEYDRLLRLS-TKPARMRLFLF 145

[Close]

BLAST of MS002137 vs. TAIR 10
Match: AT1G25300.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   KLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLADLCMRLSRTLLNGRPFTLKY 60
           KL L+CSYGG I+P P +KSL Y+GG+TR+V+V R  S  D    LS  LL+GR F+LKY
Sbjct: 10  KLHLLCSYGGRIMPLPPEKSLHYIGGETRLVIVPRGISFLDFFKLLSDKLLSGRSFSLKY 69

Query: 61  QLPHEDLDSLISIATDEDLENMIEEYDRITIASPLKPLRIRLFLF 106
           +LP  D DSLI+++ +EDL+NMI EYD   +       RIRLFLF
Sbjct: 70  KLPSCDFDSLITVSDNEDLQNMIAEYDSTRLR------RIRLFLF 108

The following BLAST results are available for this feature:

BLAST of MS002137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134583.1	1.5e-52	100.00	uncharacterized protein LOC111006815 [Momordica charantia]	[more]
XP_004137546.1	7.3e-52	98.10	uncharacterized protein LOC101210340 [Cucumis sativus] >KGN63843.1 hypothetical ...	[more]
KAG6587664.1	1.2e-51	97.14	hypothetical protein SDJN03_16229, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022925527.1	1.2e-51	97.14	uncharacterized protein LOC111432842 [Cucurbita moschata]	[more]
XP_022973326.1	1.2e-51	97.14	uncharacterized protein LOC111471889 [Cucurbita maxima]	[more]

BLAST of MS002137 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002137 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2E1	7.1e-53	100.00	uncharacterized protein LOC111006815 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0LPU6	3.5e-52	98.10	PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G024270 PE=4 SV...	[more]
A0A6J1I8C4	6.0e-52	97.14	uncharacterized protein LOC111471889 OS=Cucurbita maxima OX=3661 GN=LOC111471889...	[more]
A0A6J1EBX8	6.0e-52	97.14	uncharacterized protein LOC111432842 OS=Cucurbita moschata OX=3662 GN=LOC1114328...	[more]
A0A5D3DXZ5	3.9e-51	96.19	Ataxin-2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold62...	[more]

BLAST of MS002137 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01190.1	5.6e-42	77.36	Octicosapeptide/Phox/Bem1p family protein	[more]
AT3G18230.1	3.2e-37	72.64	Octicosapeptide/Phox/Bem1p family protein	[more]
AT4G05150.1	1.3e-27	52.83	Octicosapeptide/Phox/Bem1p family protein	[more]
AT5G09620.1	8.1e-25	54.63	Octicosapeptide/Phox/Bem1p family protein	[more]
AT1G25300.1	1.1e-24	54.29	Octicosapeptide/Phox/Bem1p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	SMART	SM00666	PB1_new	coord: 16..105 e-value: 9.4E-30 score: 114.8
IPR000270	PB1 domain	PFAM	PF00564	PB1	coord: 17..105 e-value: 9.3E-19 score: 67.2
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 1..105 score: 15.050592
None	No IPR available	GENE3D	3.10.20.90		coord: 21..104 e-value: 1.0E-10 score: 43.7
None	No IPR available	PANTHER	PTHR31066	OS05G0427100 PROTEIN-RELATED	coord: 1..105
None	No IPR available	PANTHER	PTHR31066:SF68	OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN	coord: 1..105
None	No IPR available	CDD	cd06410	PB1_UP2	coord: 5..105 e-value: 5.72604E-48 score: 146.211
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 17..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002137.1	MS002137.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding