MS002125 (gene) Bitter gourd (TR) v1

Overview


Name	MS002125
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	VQ domain-containing protein
Location	scaffold30: 2531247 .. 2531984 (+)
RNA-Seq Expression	MS002125
Synteny	MS002125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGATTTTATGGCATTGGTTCAGAAGCTCACCGGATTGTCTCGCTCGGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATCTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTCGCTCCGCCGATGTTCGAGCCACCGCCGCCGCCACCGCCACCGCAAGTAGCGAGTTCGTACCTAACGAACATCCCTGTTTACAGGCCGAATTCGACGGACTTTTTGTGCTCTAATCATCAACCGTTTTTTAACTACAACGATTCTTCTTTGCTTTTTGGTGCTCCAAATATCCATTCTCTTTCGTCCGCTAATTCAACATTGAATGGAATTAATGATTTCTGCGACTATAGCGAATAT

mRNA sequence

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGATTTTATGGCATTGGTTCAGAAGCTCACCGGATTGTCTCGCTCGGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATCTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTCGCTCCGCCGATGTTCGAGCCACCGCCGCCGCCACCGCCACCGCAAGTAGCGAGTTCGTACCTAACGAACATCCCTGTTTACAGGCCGAATTCGACGGACTTTTTGTGCTCTAATCATCAACCGTTTTTTAACTACAACGATTCTTCTTTGCTTTTTGGTGCTCCAAATATCCATTCTCTTTCGTCCGCTAATTCAACATTGAATGGAATTAATGATTTCTGCGACTATAGCGAATAT

Coding sequence (CDS)

ATGAGCCCTCAACAGCTCCATGGGAAGAGGGATAATGGCAGTACCACCGCCAATAATGGCAACGGCAATGGCAATGGATTGTGTCCGCCTCCGTTGAAGATCAATAAGGATTCTCATTTCATCAGAAAATCCTCGTCGTCTTCCTCTTCTCCTTCCTCGTCTTCCTCTTCCACCTCGTCGCTCGTCAATGGCGTCGTAGGCGCCGGCTGCGCCAAGCCGCCGCAGCGGCATCCGGTGATTATATACACGCATTCTCCCAAAATCATCCACACGCATCCTCGAGATTTTATGGCATTGGTTCAGAAGCTCACCGGATTGTCTCGCTCGGATGACGAAGCGGGAGCTAATTCTCCGAACGCGACGAAATCTGGCGAGGAGAATAAAATCATTAGCTCCAAAGTCGTGGTGACGAGTGACGATAATGAGTCGTCGTCCGTTGTGACGACGGATGAAAATTGCTGCGGCAGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTCGCTCCGCCGATGTTCGAGCCACCGCCGCCGCCACCGCCACCGCAAGTAGCGAGTTCGTACCTAACGAACATCCCTGTTTACAGGCCGAATTCGACGGACTTTTTGTGCTCTAATCATCAACCGTTTTTTAACTACAACGATTCTTCTTTGCTTTTTGGTGCTCCAAATATCCATTCTCTTTCGTCCGCTAATTCAACATTGAATGGAATTAATGATTTCTGCGACTATAGCGAATAT

Protein sequence

MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDFCDYSEY

Homology

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BLAST of MS002125 vs. NCBI nr
Match: XP_022135386.1 (VQ motif-containing protein 20 [Momordica charantia])

HSP 1 Score: 483.0 bits (1242), Expect = 1.5e-132
Identity = 245/246 (99.59%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60
           MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS
Sbjct: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60

Query: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120
           LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA
Sbjct: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120

Query: 121 TKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP 180
           TK GEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP
Sbjct: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP 180

Query: 181 PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF 240
           PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF
Sbjct: 181 PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF 240

Query: 241 CDYSEY 247
           CDYSEY
Sbjct: 241 CDYSEY 246

[Close]

BLAST of MS002125 vs. NCBI nr
Match: XP_023007145.1 (VQ motif-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 4.3e-87
Identity = 199/254 (78.35%), Postives = 213/254 (83.86%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN    SKVVV SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENN-KGSKVVV-SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. NCBI nr
Match: KAG7021613.1 (VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-86
Identity = 196/254 (77.17%), Postives = 210/254 (82.68%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNG+      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGIAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN   S  VV  SDDNESSSVV TDENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TDENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. NCBI nr
Match: XP_022933476.1 (VQ motif-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 329.3 bits (843), Expect = 2.8e-86
Identity = 196/254 (77.17%), Postives = 210/254 (82.68%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN   S  VV  SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. NCBI nr
Match: KAG6587652.1 (VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-86
Identity = 193/254 (75.98%), Postives = 209/254 (82.28%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGV-----VGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNG+     V +    PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGIAAAVAVASSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN   S  VV  SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-27
Identity = 105/267 (39.33%), Postives = 140/267 (52.43%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKI 88
           PP LK+NKDSH I+K      SPSS SS+             AKP  RHPVIIYTH+P+I
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSA-------------AKP--RHPVIIYTHTPRI 102

Query: 89  IHTHPRDFMALVQKLTGLSRSDDEAGANS----PNATKSGEENKIISSKVV--------- 148
           IHT+P+DFMALVQKLTG++ SD++ G  +    P   KS   N+ +S   V         
Sbjct: 103 IHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKS--INRTVSEPTVDRKNNRNRC 162

Query: 149 ------------------------VTSDDNESSSVVTTDENCCGSGVVEGQV--NSCFAP 208
                                   + S+D+ESSSV+TT+EN    G V   +  ++   P
Sbjct: 163 GGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGEHGQVNSSLPYSAVAIP 222

Query: 209 PM--FEPPPPPPPPQV-------ASSYLTNIPVYRP-NSTD-FLCSNHQPFFNYNDSSLL 244
           P     PPPPPPPP +         +YL   P++ P N  D FLC N QPF N++D   L
Sbjct: 223 PQPPPHPPPPPPPPSMYDAAGINYGAYLPTFPIFPPANPADNFLCGN-QPFANFDDP--L 282

[Close]

BLAST of MS002125 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-06
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 25  NGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTH 84
           NG  P  LK+  +SH I+K+SS  S P     ++                   PVIIY H
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS-------------------PVIIYAH 69

Query: 85  SPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISSKVVVTSDDNESS 144
           SPK+IHT   DFMALVQ+LTGL   D+    N+  ++ S      + ++ V   DDN ++
Sbjct: 70  SPKVIHTRAEDFMALVQRLTGL---DEIIRRNTSESSSS------VVTEEVNVGDDNTAA 101

[Close]

BLAST of MS002125 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.2e-04
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PV IYT +P+
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVNIYTVTPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISS 133
           IIHTHP +FM LVQ+LTG + +   + ++S + ++  + + ++ +
Sbjct: 76  IIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDT 114

[Close]

BLAST of MS002125 vs. ExPASy TrEMBL
Match: A0A6J1C0L6 (VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.3e-133
Identity = 245/246 (99.59%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60
           MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS
Sbjct: 1   MSPQQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSS 60

Query: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120
           LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA
Sbjct: 61  LVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNA 120

Query: 121 TKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP 180
           TK GEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP
Sbjct: 121 TKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMFEPPPPPPP 180

Query: 181 PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF 240
           PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF
Sbjct: 181 PQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANSTLNGINDF 240

Query: 241 CDYSEY 247
           CDYSEY
Sbjct: 241 CDYSEY 246

[Close]

BLAST of MS002125 vs. ExPASy TrEMBL
Match: A0A6J1L266 (VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 2.1e-87
Identity = 199/254 (78.35%), Postives = 213/254 (83.86%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN    SKVVV SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENN-KGSKVVV-SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. ExPASy TrEMBL
Match: A0A6J1EZ55 (VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111440881 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.3e-86
Identity = 196/254 (77.17%), Postives = 210/254 (82.68%), Query Frame = 0


Query: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60

Query: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120
           SS LVNGV      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120

Query: 121 AGANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180
           A   SP ATKSG+EN   S  VV  SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180

Query: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240

Query: 241 TLNGINDFCDYSEY 247
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCEYGEY 241

[Close]

BLAST of MS002125 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.8e-73
Identity = 178/254 (70.08%), Postives = 197/254 (77.56%), Query Frame = 0


Query: 1   MSP---QQLHGKRDNGSTTANNGNGNGNGLCPPP-LKINKDSHFIRKSSSSS--SSPSSS 60
           MSP   QQ+HGKRDN   T NN N     L PPP LKINKDSH IRKSSSSS  SSPSSS
Sbjct: 1   MSPQQQQQIHGKRDN--QTNNNAN---KPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSS 60

Query: 61  SSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEAG 120
           SSST+SL+NGV+    AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSDDEA 
Sbjct: 61  SSSTTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAS 120

Query: 121 ANSPNATKSGEENKIISSKVVVTSDDNESSSVVTTDENCCG----SGVVE-GQVNSCFAP 180
             +   +   E NK  +SKVV  +DDNESSSVVTTDENCCG    SG VE GQVNSCF P
Sbjct: 121 TKATAKSVVDENNK--ASKVV--NDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGP 180

Query: 181 PMFEPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSS 240
            +FEPPPPPPPPQ+ASSYL+NIPVY PNST+FLC N QP FNY+D SLLFG+ NI SLSS
Sbjct: 181 AIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGN-QPIFNYDD-SLLFGS-NIPSLSS 237

Query: 241 ANSTLNGINDFCDY 244
                NG++DF ++
Sbjct: 241 -----NGVSDFSEF 237

[Close]

BLAST of MS002125 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 6.7e-70
Identity = 169/262 (64.50%), Postives = 187/262 (71.37%), Query Frame = 0


Query: 1   MSP-QQLHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSSS----SSPSSSS 60
           MSP QQ+HGKRDN      N NGN   LCPPPLKINKDSH IRK+SSSS    SSPSSSS
Sbjct: 1   MSPQQQIHGKRDN----QINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTSSLVNGV--VGAGCAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDEA 120
           SST+SLVNGV    A  AKP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTG+SRSDD  
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHE 120

Query: 121 GANSPNATKS--GEENKIISSKVVVTSDDNESSSVVTTDENCC----GSGVVE-GQVNSC 180
            +     TK    E N        V SDDNESSSVVTTDENCC    GSG++E GQVNSC
Sbjct: 121 ASTKLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSC 180

Query: 181 FAPPMFEPPPP---PPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPN 240
           F P +FEPPPP   PPPPQ+A+SYLTNIP+Y PNS +FLC+N QP FNY+D SLLFG   
Sbjct: 181 FGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCAN-QPIFNYDD-SLLFGGNR 240

Query: 241 IHSLSSANSTLNGINDFCDYSE 246
           +            +NDFC+YSE
Sbjct: 241 V------------VNDFCEYSE 244

[Close]

BLAST of MS002125 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 105/267 (39.33%), Postives = 140/267 (52.43%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPKI 88
           PP LK+NKDSH I+K      SPSS SS+             AKP  RHPVIIYTH+P+I
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSA-------------AKP--RHPVIIYTHTPRI 102

Query: 89  IHTHPRDFMALVQKLTGLSRSDDEAGANS----PNATKSGEENKIISSKVV--------- 148
           IHT+P+DFMALVQKLTG++ SD++ G  +    P   KS   N+ +S   V         
Sbjct: 103 IHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKS--INRTVSEPTVDRKNNRNRC 162

Query: 149 ------------------------VTSDDNESSSVVTTDENCCGSGVVEGQV--NSCFAP 208
                                   + S+D+ESSSV+TT+EN    G V   +  ++   P
Sbjct: 163 GGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGEHGQVNSSLPYSAVAIP 222

Query: 209 PM--FEPPPPPPPPQV-------ASSYLTNIPVYRP-NSTD-FLCSNHQPFFNYNDSSLL 244
           P     PPPPPPPP +         +YL   P++ P N  D FLC N QPF N++D   L
Sbjct: 223 PQPPPHPPPPPPPPSMYDAAGINYGAYLPTFPIFPPANPADNFLCGN-QPFANFDDP--L 282

[Close]

BLAST of MS002125 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 25  NGLCPPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTH 84
           NG  P  LK+  +SH I+K+SS  S P     ++                   PVIIY H
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS-------------------PVIIYAH 69

Query: 85  SPKIIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISSKVVVTSDDNESS 144
           SPK+IHT   DFMALVQ+LTGL   D+    N+  ++ S      + ++ V   DDN ++
Sbjct: 70  SPKVIHTRAEDFMALVQRLTGL---DEIIRRNTSESSSS------VVTEEVNVGDDNTAA 101

[Close]

BLAST of MS002125 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-05
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PVIIYT SP+
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVIIYTVSPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISS 133
           IIHTHP +FM LVQ+LTG + +   + + S + +   + + ++ +
Sbjct: 76  IIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDT 114

[Close]

BLAST of MS002125 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 46.2 bits (108), Expect = 4.4e-05
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 29  PPPLKINKDSH-FIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPPQRHPVIIYTHSPK 88
           P PLK+  DSH  I+K   +   P      T            ++PP   PV IYT +P+
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQ-----QEPSQSRPPP-GPVNIYTVTPR 75

Query: 89  IIHTHPRDFMALVQKLTGLSRSDDEAGANSPNATKSGEENKIISS 133
           IIHTHP +FM LVQ+LTG + +   + ++S + ++  + + ++ +
Sbjct: 76  IIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDT 114

[Close]

BLAST of MS002125 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 35/105 (33.33%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 29  PPPLKINKDSHFIRKSSSSSSSPSSSSSSTSSLVNGVVGAGCAKPP--QRHPVIIYTHSP 88
           P PL ++KDSH I+K     + P +                   PP   R PV+IY  SP
Sbjct: 29  PSPLSVHKDSHKIKKPPKHPAPPPNRDQ---------------PPPYIPREPVVIYAVSP 88

Query: 89  KIIHTHPRDFMALVQKLTGLSR----SDDEAGANSPNATKSGEEN 128
           K++H    +FM +VQ+LTG+S          G  SP A  +  EN
Sbjct: 89  KVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTEN 118

The following BLAST results are available for this feature:

BLAST of MS002125 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135386.1	1.5e-132	99.59	VQ motif-containing protein 20 [Momordica charantia]	[more]
XP_023007145.1	4.3e-87	78.35	VQ motif-containing protein 20-like [Cucurbita maxima]	[more]
KAG7021613.1	1.2e-86	77.17	VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022933476.1	2.8e-86	77.17	VQ motif-containing protein 20-like [Cucurbita moschata]	[more]
KAG6587652.1	4.7e-86	75.98	VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS002125 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	2.3e-27	39.33	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	2.3e-06	35.83	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	6.2e-04	32.38	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of MS002125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0L6	7.3e-133	99.59	VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE...	[more]
A0A6J1L266	2.1e-87	78.35	VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 ...	[more]
A0A6J1EZ55	1.3e-86	77.17	VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC11144088...	[more]
A0A0A0LKA6	3.8e-73	70.08	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A1S3BXM8	6.7e-70	64.50	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]

BLAST of MS002125 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.7e-28	39.33	VQ motif-containing protein	[more]
AT1G68450.1	1.6e-07	35.83	VQ motif-containing protein	[more]
AT1G21326.1	2.0e-05	34.29	VQ motif-containing protein	[more]
AT1G21320.1	4.4e-05	32.38	nucleotide binding;nucleic acid binding	[more]
AT3G18690.1	1.3e-04	33.33	MAP kinase substrate 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 83..107 e-value: 2.6E-11 score: 42.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..243
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002125.1	MS002125.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response