Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG
mRNA sequence
ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG
Coding sequence (CDS)
ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG
Protein sequence
MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEYFGGRKRALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGLRLDLNIAVAVESDGG
Homology
BLAST of MS002116 vs. NCBI nr
Match:
KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])
HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 0
Query: 1 MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
MG+EKR+R + EN I KKTKN++ T AEEPTDEEVEEF++ILRRMK+ EY
Sbjct: 1 MGKEKRKRQM-ENRAEIHEKKTKNDD----TPTPAAEEPTDEEVEEFYMILRRMKQMAEY 60
Query: 61 FGGRKRALTESL---IGAAADREEKEEEEEKEE-----AALSPAGMKRRGKGTEVVEENG 120
FG + L +SL + AAAD++EK+EEEE+E+ AA SPA + RRGKG EVVEENG
Sbjct: 61 FGVERGMLAKSLSAVVAAAADQQEKKEEEEEEKKGLSMAAPSPAEVSRRGKGKEVVEENG 120
Query: 121 LRLDLNIAVAVESDGG 129
LRLDLNIA+AV+ G
Sbjct: 121 LRLDLNIALAVQQSDG 131
BLAST of MS002116 vs. NCBI nr
Match:
KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 115.5 bits (288), Expect = 3.3e-22
Identity = 78/128 (60.94%), Postives = 88/128 (68.75%), Query Frame = 0
Query: 6 RRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEYFGGRK 65
+R+ EN KKTKN+E AAA +EPTDEEVEEF+ ILRRMK A EYFG K
Sbjct: 5 KRKCQSENDGKFCEKKTKNDETTAAA----EKEPTDEEVEEFYSILRRMKRAAEYFGVEK 64
Query: 66 RALTESL---IGAAADREEKEEEE---EKEEAALSPAGMKRRGKGTEVVEENGLRLDLNI 125
LT+SL AAADREEKEEE+ ++ EA A MK+ GKG EVV ENGLRLDLNI
Sbjct: 65 GMLTKSLRDVAAAAADREEKEEEKKGVKRAEAETDVARMKQGGKGKEVVAENGLRLDLNI 124
Query: 126 AVAVESDG 128
AVAVESDG
Sbjct: 125 AVAVESDG 128
BLAST of MS002116 vs. NCBI nr
Match:
KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])
HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0
Query: 1 MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
MG+EKR+R + E+ I KKT+N++ A+ A AEEPTDEEVEEF++ILRRMK+ EY
Sbjct: 1 MGKEKRKRQL-ESRVPIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60
Query: 61 FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
FG + LT+SL + AAA+++EK+EEE+ AA +PA +RGK EVVEENGLR
Sbjct: 61 FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120
Query: 121 LDLNIAVAVESDG 128
LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129
BLAST of MS002116 vs. NCBI nr
Match:
TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])
HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0
Query: 1 MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
MG+EKR+R + E+ I KKT+N++ A+ A AEEPTDEEVEEF++ILRRMK+ EY
Sbjct: 1 MGKEKRKRQL-ESRVRIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60
Query: 61 FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
FG + LT+SL + AAA+++EK+EEE+ AA +PA +RGK EVVEENGLR
Sbjct: 61 FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120
Query: 121 LDLNIAVAVESDG 128
LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129
BLAST of MS002116 vs. NCBI nr
Match:
RQO93794.1 (hypothetical protein POPTR_T172014 [Populus trichocarpa] >RQO93795.1 hypothetical protein POPTR_T172014 [Populus trichocarpa])
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 2 GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
G+EKRRRG E+ G K E + AT +E T+EEVEEFF ILRRM+EA
Sbjct: 19 GKEKRRRGDKESEQGRKKKVRGQEGKEEVVTVATEDEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
+YFG RA E+ + D EEE + +G + E EENG+
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEEN----MIQSSGAEEVAAVVEEEEENGV 138
Query: 122 RLDLNIAVAVESDG 128
LDLN VESDG
Sbjct: 139 -LDLNATPVVESDG 147
BLAST of MS002116 vs. ExPASy TrEMBL
Match:
A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 9.6e-20
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0
Query: 1 MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
MG+EKR+R + E+ I KKT+N++ A+ A AEEPTDEEVEEF++ILRRMK+ EY
Sbjct: 1 MGKEKRKRQL-ESRVRIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60
Query: 61 FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
FG + LT+SL + AAA+++EK+EEE+ AA +PA +RGK EVVEENGLR
Sbjct: 61 FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120
Query: 121 LDLNIAVAVESDG 128
LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129
BLAST of MS002116 vs. ExPASy TrEMBL
Match:
A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 9.6e-20
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0
Query: 1 MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
MG+EKR+R + E+ I KKT+N++ A+ A AEEPTDEEVEEF++ILRRMK+ EY
Sbjct: 1 MGKEKRKRQL-ESRVPIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60
Query: 61 FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
FG + LT+SL + AAA+++EK+EEE+ AA +PA +RGK EVVEENGLR
Sbjct: 61 FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120
Query: 121 LDLNIAVAVESDG 128
LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129
BLAST of MS002116 vs. ExPASy TrEMBL
Match:
A0A3N7FGA1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 2 GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
G+EKRRRG E+ G K E + AT +E T+EEVEEFF ILRRM+EA
Sbjct: 19 GKEKRRRGDKESEQGRKKKVRGQEGKEEVVTVATEDEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
+YFG RA E+ + D EEE + +G + E EENG+
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEEN----MIQSSGAEEVAAVVEEEEENGV 138
Query: 122 RLDLNIAVAVESDG 128
LDLN VESDG
Sbjct: 139 -LDLNATPVVESDG 147
BLAST of MS002116 vs. ExPASy TrEMBL
Match:
A0A3N7G0A2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 2 GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
G+EKR+RG E+ G K E + AT EE T+EEVEEFF ILRRM+EA
Sbjct: 19 GKEKRKRGDKESEQGRKKKVRGREGKEEVVTVATEEEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
+YFG RA E+ + D E EE + +G + E EENG+
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNE----EEIMIQSSGAEEVAAVVEEEEENGV 138
Query: 122 RLDLNIAVAVESDG 128
LDLN VESDG
Sbjct: 139 -LDLNATPVVESDG 147
BLAST of MS002116 vs. ExPASy TrEMBL
Match:
A0A2N9GJM2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27521 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 51/124 (41.13%), Postives = 67/124 (54.03%), Query Frame = 0
Query: 1 MGREKRRR-GVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVE 60
M EKR+R G E +G +KK + E P++EEVEEFF ILRRMK AV+
Sbjct: 1 MELEKRKRGGEKEGEEGEEIKKVREE-----VGKGEGVVPSEEEVEEFFAILRRMKVAVK 60
Query: 61 YF-----GGRKRALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGLR 119
YF G RA + G D EE+EEEE+K + + K++ KG EE+G+
Sbjct: 61 YFERGGNGEGWRAALGTEEGGVVDEEEEEEEEDKRDVMMM---KKKKKKGHTREEESGI- 115
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8652459.1 | 3.5e-24 | 58.09 | hypothetical protein Csa_013196 [Cucumis sativus] | [more] |
KAG6589551.1 | 3.3e-22 | 60.94 | hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0058070.1 | 2.0e-19 | 57.14 | hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa] | [more] |
TYK28420.1 | 2.0e-19 | 57.14 | hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa] | [more] |
RQO93794.1 | 3.3e-06 | 40.30 | hypothetical protein POPTR_T172014 [Populus trichocarpa] >RQO93795.1 hypothetica... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DYW7 | 9.6e-20 | 57.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7USD1 | 9.6e-20 | 57.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A3N7FGA1 | 1.6e-06 | 40.30 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=... | [more] |
A0A3N7G0A2 | 2.1e-06 | 40.30 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 ... | [more] |
A0A2N9GJM2 | 3.9e-05 | 41.13 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27521 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |