MS002116 (gene) Bitter gourd (TR) v1

Overview


Name	MS002116
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 2471373 .. 2471756 (-)
RNA-Seq Expression	MS002116
Synteny	MS002116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG

mRNA sequence

ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG

Coding sequence (CDS)

ATGGGAAGGGAAAAAAGGAGAAGGGGGGTACCGGAAAACAGCGACGGAATTGGTGTAAAGAAGACAAAGAACGAGGAGCAAGCGGCGGCGGCGGCGACGGCGACGGCGGAGGAGCCGACGGACGAGGAGGTGGAGGAGTTTTTTGTGATACTGCGGCGGATGAAGGAAGCGGTGGAGTATTTCGGAGGGAGGAAGAGGGCATTGACGGAGAGTTTGATCGGAGCGGCGGCGGATCGGGAAGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGCGGCGCTGTCGCCGGCGGGGATGAAACGCCGTGGGAAGGGGACGGAAGTGGTGGAGGAAAATGGGTTGAGGTTGGATTTGAATATAGCGGTGGCGGTGGAGAGCGACGGCGGG

Protein sequence

MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEYFGGRKRALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGLRLDLNIAVAVESDGG

Homology

[Close]

BLAST of MS002116 vs. NCBI nr
Match: KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
           MG+EKR+R + EN   I  KKTKN++      T  AEEPTDEEVEEF++ILRRMK+  EY
Sbjct: 1   MGKEKRKRQM-ENRAEIHEKKTKNDD----TPTPAAEEPTDEEVEEFYMILRRMKQMAEY 60

Query: 61  FGGRKRALTESL---IGAAADREEKEEEEEKEE-----AALSPAGMKRRGKGTEVVEENG 120
           FG  +  L +SL   + AAAD++EK+EEEE+E+     AA SPA + RRGKG EVVEENG
Sbjct: 61  FGVERGMLAKSLSAVVAAAADQQEKKEEEEEEKKGLSMAAPSPAEVSRRGKGKEVVEENG 120

Query: 121 LRLDLNIAVAVESDGG 129
           LRLDLNIA+AV+   G
Sbjct: 121 LRLDLNIALAVQQSDG 131

[Close]

BLAST of MS002116 vs. NCBI nr
Match: KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-22
Identity = 78/128 (60.94%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 6   RRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEYFGGRK 65
           +R+   EN      KKTKN+E  AAA     +EPTDEEVEEF+ ILRRMK A EYFG  K
Sbjct: 5   KRKCQSENDGKFCEKKTKNDETTAAA----EKEPTDEEVEEFYSILRRMKRAAEYFGVEK 64

Query: 66  RALTESL---IGAAADREEKEEEE---EKEEAALSPAGMKRRGKGTEVVEENGLRLDLNI 125
             LT+SL     AAADREEKEEE+   ++ EA    A MK+ GKG EVV ENGLRLDLNI
Sbjct: 65  GMLTKSLRDVAAAAADREEKEEEKKGVKRAEAETDVARMKQGGKGKEVVAENGLRLDLNI 124

Query: 126 AVAVESDG 128
           AVAVESDG
Sbjct: 125 AVAVESDG 128

[Close]

BLAST of MS002116 vs. NCBI nr
Match: KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 1   MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
           MG+EKR+R + E+   I  KKT+N++  A+ A   AEEPTDEEVEEF++ILRRMK+  EY
Sbjct: 1   MGKEKRKRQL-ESRVPIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60

Query: 61  FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
           FG  +  LT+SL   + AAA+++EK+EEE+    AA +PA   +RGK   EVVEENGLR 
Sbjct: 61  FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120

Query: 121 LDLNIAVAVESDG 128
           LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129

[Close]

BLAST of MS002116 vs. NCBI nr
Match: TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 1   MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
           MG+EKR+R + E+   I  KKT+N++  A+ A   AEEPTDEEVEEF++ILRRMK+  EY
Sbjct: 1   MGKEKRKRQL-ESRVRIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60

Query: 61  FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
           FG  +  LT+SL   + AAA+++EK+EEE+    AA +PA   +RGK   EVVEENGLR 
Sbjct: 61  FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120

Query: 121 LDLNIAVAVESDG 128
           LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129

[Close]

BLAST of MS002116 vs. NCBI nr
Match: RQO93794.1 (hypothetical protein POPTR_T172014 [Populus trichocarpa] >RQO93795.1 hypothetical protein POPTR_T172014 [Populus trichocarpa])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 2   GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
           G+EKRRRG  E+  G   K    E +      AT +E     T+EEVEEFF ILRRM+EA
Sbjct: 19  GKEKRRRGDKESEQGRKKKVRGQEGKEEVVTVATEDEVVTVATEEEVEEFFAILRRMQEA 78

Query: 62  VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
            +YFG       RA  E+ +    D     EEE      +  +G +      E  EENG+
Sbjct: 79  AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEEN----MIQSSGAEEVAAVVEEEEENGV 138

Query: 122 RLDLNIAVAVESDG 128
            LDLN    VESDG
Sbjct: 139 -LDLNATPVVESDG 147

[Close]

BLAST of MS002116 vs. ExPASy TrEMBL
Match: A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.6e-20
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 1   MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
           MG+EKR+R + E+   I  KKT+N++  A+ A   AEEPTDEEVEEF++ILRRMK+  EY
Sbjct: 1   MGKEKRKRQL-ESRVRIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60

Query: 61  FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
           FG  +  LT+SL   + AAA+++EK+EEE+    AA +PA   +RGK   EVVEENGLR 
Sbjct: 61  FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120

Query: 121 LDLNIAVAVESDG 128
           LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129

[Close]

BLAST of MS002116 vs. ExPASy TrEMBL
Match: A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.6e-20
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 1   MGREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVEY 60
           MG+EKR+R + E+   I  KKT+N++  A+ A   AEEPTDEEVEEF++ILRRMK+  EY
Sbjct: 1   MGKEKRKRQL-ESRVPIHEKKTENDDSTASPA---AEEPTDEEVEEFYMILRRMKQMAEY 60

Query: 61  FGGRKRALTESL---IGAAADREEKEEEEE-KEEAALSPAGMKRRGKG-TEVVEENGLR- 120
           FG  +  LT+SL   + AAA+++EK+EEE+    AA +PA   +RGK   EVVEENGLR 
Sbjct: 61  FGVERGMLTKSLSAVVAAAANQQEKKEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRL 120

Query: 121 LDLNIAVAVESDG 128
           LDLNIAVAV+SDG
Sbjct: 121 LDLNIAVAVQSDG 129

[Close]

BLAST of MS002116 vs. ExPASy TrEMBL
Match: A0A3N7FGA1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 2   GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
           G+EKRRRG  E+  G   K    E +      AT +E     T+EEVEEFF ILRRM+EA
Sbjct: 19  GKEKRRRGDKESEQGRKKKVRGQEGKEEVVTVATEDEVVTVATEEEVEEFFAILRRMQEA 78

Query: 62  VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
            +YFG       RA  E+ +    D     EEE      +  +G +      E  EENG+
Sbjct: 79  AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEEN----MIQSSGAEEVAAVVEEEEENGV 138

Query: 122 RLDLNIAVAVESDG 128
            LDLN    VESDG
Sbjct: 139 -LDLNATPVVESDG 147

[Close]

BLAST of MS002116 vs. ExPASy TrEMBL
Match: A0A3N7G0A2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 54/134 (40.30%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 2   GREKRRRGVPENSDGIGVKKTKNEEQAAAAATATAEE----PTDEEVEEFFVILRRMKEA 61
           G+EKR+RG  E+  G   K    E +      AT EE     T+EEVEEFF ILRRM+EA
Sbjct: 19  GKEKRKRGDKESEQGRKKKVRGREGKEEVVTVATEEEVVTVATEEEVEEFFAILRRMQEA 78

Query: 62  VEYFGGRK----RALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGL 121
            +YFG       RA  E+ +    D     E    EE  +  +G +      E  EENG+
Sbjct: 79  AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNE----EEIMIQSSGAEEVAAVVEEEEENGV 138

Query: 122 RLDLNIAVAVESDG 128
            LDLN    VESDG
Sbjct: 139 -LDLNATPVVESDG 147

[Close]

BLAST of MS002116 vs. ExPASy TrEMBL
Match: A0A2N9GJM2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27521 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 51/124 (41.13%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 1   MGREKRRR-GVPENSDGIGVKKTKNEEQAAAAATATAEEPTDEEVEEFFVILRRMKEAVE 60
           M  EKR+R G  E  +G  +KK + E             P++EEVEEFF ILRRMK AV+
Sbjct: 1   MELEKRKRGGEKEGEEGEEIKKVREE-----VGKGEGVVPSEEEVEEFFAILRRMKVAVK 60

Query: 61  YF-----GGRKRALTESLIGAAADREEKEEEEEKEEAALSPAGMKRRGKGTEVVEENGLR 119
           YF     G   RA   +  G   D EE+EEEE+K +  +     K++ KG    EE+G+ 
Sbjct: 61  YFERGGNGEGWRAALGTEEGGVVDEEEEEEEEDKRDVMMM---KKKKKKGHTREEESGI- 115

The following BLAST results are available for this feature:

BLAST of MS002116 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652459.1	3.5e-24	58.09	hypothetical protein Csa_013196 [Cucumis sativus]	[more]
KAG6589551.1	3.3e-22	60.94	hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058070.1	2.0e-19	57.14	hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa]	[more]
TYK28420.1	2.0e-19	57.14	hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa]	[more]
RQO93794.1	3.3e-06	40.30	hypothetical protein POPTR_T172014 [Populus trichocarpa] >RQO93795.1 hypothetica...	[more]

BLAST of MS002116 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYW7	9.6e-20	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USD1	9.6e-20	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A3N7FGA1	1.6e-06	40.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=...	[more]
A0A3N7G0A2	2.1e-06	40.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 ...	[more]
A0A2N9GJM2	3.9e-05	41.13	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27521 PE=4 SV=1	[more]

BLAST of MS002116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR35735:SF5	TRANSMEMBRANE PROTEIN DDB_G0274347-LIKE	coord: 1..126
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002116.1	MS002116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance