MS002115 (gene) Bitter gourd (TR) v1

Overview
NameMS002115
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold30: 2471343 .. 2471759 (+)
RNA-Seq ExpressionMS002115
SyntenyMS002115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGACCGGAAAATCTCCCTCGCACGTCTCACCCGCCGTCGCTCTCCACCGCCACCGCTATATTCAAATCCAACCTCAACCCATTTTCCTCCACCACTTCCGTCCCCTTCCCACGGCGTTTCATCCCCGCCGGCGACAGCGCCGCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCTTCCCGATCCGCCGCCGCTCCGATCAAACTCTCCGTCAATGCCCTCTTCCTCCCTCCGAAATACTCCACCGCTTCCTTCATCCGCCGCAGTATCACAAAAAACTCCTCCACCTCCTCGTCCGTCGGCTCCTCCGCCGTCGCCGTCGCCGCCGCCGCCGCTTGCTCCTCGTTCTTTGTCTTCTTTACACCAATTCCGTCGCTGTTTTCCGGTACCCCCCTTCTCCTTTTTTCCCTTCCCATTTC

mRNA sequence

CTGACCGGAAAATCTCCCTCGCACGTCTCACCCGCCGTCGCTCTCCACCGCCACCGCTATATTCAAATCCAACCTCAACCCATTTTCCTCCACCACTTCCGTCCCCTTCCCACGGCGTTTCATCCCCGCCGGCGACAGCGCCGCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCTTCCCGATCCGCCGCCGCTCCGATCAAACTCTCCGTCAATGCCCTCTTCCTCCCTCCGAAATACTCCACCGCTTCCTTCATCCGCCGCAGTATCACAAAAAACTCCTCCACCTCCTCGTCCGTCGGCTCCTCCGCCGTCGCCGTCGCCGCCGCCGCCGCTTGCTCCTCGTTCTTTGTCTTCTTTACACCAATTCCGTCGCTGTTTTCCGGTACCCCCCTTCTCCTTTTTTCCCTTCCCATTTC

Coding sequence (CDS)

CTGACCGGAAAATCTCCCTCGCACGTCTCACCCGCCGTCGCTCTCCACCGCCACCGCTATATTCAAATCCAACCTCAACCCATTTTCCTCCACCACTTCCGTCCCCTTCCCACGGCGTTTCATCCCCGCCGGCGACAGCGCCGCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCTTCCCGATCCGCCGCCGCTCCGATCAAACTCTCCGTCAATGCCCTCTTCCTCCCTCCGAAATACTCCACCGCTTCCTTCATCCGCCGCAGTATCACAAAAAACTCCTCCACCTCCTCGTCCGTCGGCTCCTCCGCCGTCGCCGTCGCCGCCGCCGCCGCTTGCTCCTCGTTCTTTGTCTTCTTTACACCAATTCCGTCGCTGTTTTCCGGTACCCCCCTTCTCCTTTTTTCCCTTCCCATTTC

Protein sequence

LTGKSPSHVSPAVALHRHRYIQIQPQPIFLHHFRPLPTAFHPRRRQRRLLLLLLLLLLFPIRRRSDQTLRQCPLPPSEILHRFLHPPQYHKKLLHLLVRRLLRRRRRRRRRLLLVLCLLYTNSVAVFRYPPSPFFPSHF
Homology
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BLAST of MS002115 vs. ExPASy TrEMBL
Match: A0A0A0LPJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023030 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 75/139 (53.96%), Postives = 86/139 (61.87%), Query Frame = 0 

Query: 10  SPAVA-LHRHRYIQIQPQPIFLHHFRPLPTAFHPRRRQRR-----LLLLLLLLLLFPIRR 69
           S AVA L+   YIQIQ QPIFLHHF PLPT+ H RRR+ R     LLL LLLL L  I R
Sbjct: 14  SQAVALLYCQSYIQIQSQPIFLHHFLPLPTSAHLRRRRSRHTQSLLLLFLLLLFLLLICR 73

Query: 70  RSD---QTLRQCPLPPSEILHRFLHPPQYHKKLLHLLVRRLLRRRRRRRRRLLLVLCLLY 129
            S+   QTLRQ P   S+IL   LHPP+YH +LL LLV  LLR R RR    ++V   L+
Sbjct: 74  SSNHRTQTLRQHPSLHSKILRHLLHPPEYHIELLDLLVGWLLRCRGRR----IVVFGFLF 133

Query: 130 TNSVAVFRYPPSPFFPSHF 140
            N  +VF  P S  F SHF
Sbjct: 134 MNFGSVFHLPLS-LFLSHF 147

The following BLAST results are available for this feature:
BLAST of MS002115 vs.
Match NameE-valueIdentityDescription
BLAST of MS002115 vs.
Match NameE-valueIdentityDescription
BLAST of MS002115 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ71.6e-1553.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G023030 PE=4 SV=1[more]
BLAST of MS002115 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002115.1MS002115.1mRNA