MS002113 (gene) Bitter gourd (TR) v1

Overview


Name	MS002113
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AT-rich interactive domain protein
Location	scaffold30: 2457673 .. 2458659 (-)
RNA-Seq Expression	MS002113
Synteny	MS002113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGACCATAACCAACGGCGGCGCCGCCGGAGGCAGCGGTGGTGGGATTCTCTACAGAACCTCCACCAAAATCCCTTCCAACCAATTCCTTCTCCGTCGCAACGCGCTCTTCCCGCCGTCCAATGAAGCCCGCACCCTCCACGTCGTTCAGGCCAAGAAATCCTCATTCCGAACCGGGCGATTCGACAGTAAGAACCGAAGGAGCTCGACGACGACCAAGGAACAGGAGGAGGAAGAAGAAGAACGAAATCGGACGGCGGAAATTGAAAGGGATGGTCCAAACGTTGAAAATGCCGGCGTAGCGTTCGATGTGGATGAGAATTTGCCGGAACTTCCAGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATCCCCTCGGCTTCTTCCTGGAATATTTGTGGGCTTTTGGCATCGCTTTCGCGGTACCATTTTTCCCCTTCCATTAATTTCCATTTCCTTTCCAATAATTATTTTGATTGATTCTGTTGTCTGTTCTAATCTTTGATAGGGTTGAGCGAACGATTCAGATTGATAACTTAATTTCTGTTATGTAGTTGGTTTAGTTGGAATATTATTAATTAAGGGATGACATTTGAAATAAACCTGGCAAAATTCTACTTTCTAGGAGATACTAATCAGTAACCCAGAAATTTGGCATTAGATATCAATCCCAAAGTTCCTATTTGTTTGTTTAAGATCTTTAGCATTAGTCAGATGTGTTCGTTTTGGGATAAAATAGCATTATAGTTCTATTCTCCTTTTGTAAAAGGGCGATGAGACTGATTCATTCATTTATATCATAATAGCTAATTGCTTGCGGGATTGCTGTTACTACATATAACGAAGGAGCAACTGATTTTAAGGATACGCCTGCATACAAAGAATCAGTTCAAACTCAAGAGCTATTAGAAGAGCCCGAGGCATCGAACCCAGATGTCTTTGAATCTAATCCAACTGAGGTGGCTCCTAGTTTGGAA

mRNA sequence

ATGGCTCTGACCATAACCAACGGCGGCGCCGCCGGAGGCAGCGGTGGTGGGATTCTCTACAGAACCTCCACCAAAATCCCTTCCAACCAATTCCTTCTCCGTCGCAACGCGCTCTTCCCGCCGTCCAATGAAGCCCGCACCCTCCACGTCGTTCAGGCCAAGAAATCCTCATTCCGAACCGGGCGATTCGACAGTAAGAACCGAAGGAGCTCGACGACGACCAAGGAACAGGAGGAGGAAGAAGAAGAACGAAATCGGACGGCGGAAATTGAAAGGGATGGTCCAAACGTTGAAAATGCCGGCGTAGCGTTCGATGTGGATGAGAATTTGCCGGAACTTCCAGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATCCCCTCGGCTTCTTCCTGGAATATTTGTGGGCTTTTGGCATCGCTTTCGCGCTAATTGCTTGCGGGATTGCTGTTACTACATATAACGAAGGAGCAACTGATTTTAAGGATACGCCTGCATACAAAGAATCAGTTCAAACTCAAGAGCTATTAGAAGAGCCCGAGGCATCGAACCCAGATGTCTTTGAATCTAATCCAACTGAGGTGGCTCCTAGTTTGGAA

Coding sequence (CDS)

ATGGCTCTGACCATAACCAACGGCGGCGCCGCCGGAGGCAGCGGTGGTGGGATTCTCTACAGAACCTCCACCAAAATCCCTTCCAACCAATTCCTTCTCCGTCGCAACGCGCTCTTCCCGCCGTCCAATGAAGCCCGCACCCTCCACGTCGTTCAGGCCAAGAAATCCTCATTCCGAACCGGGCGATTCGACAGTAAGAACCGAAGGAGCTCGACGACGACCAAGGAACAGGAGGAGGAAGAAGAAGAACGAAATCGGACGGCGGAAATTGAAAGGGATGGTCCAAACGTTGAAAATGCCGGCGTAGCGTTCGATGTGGATGAGAATTTGCCGGAACTTCCAGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATCCCCTCGGCTTCTTCCTGGAATATTTGTGGGCTTTTGGCATCGCTTTCGCGCTAATTGCTTGCGGGATTGCTGTTACTACATATAACGAAGGAGCAACTGATTTTAAGGATACGCCTGCATACAAAGAATCAGTTCAAACTCAAGAGCTATTAGAAGAGCCCGAGGCATCGAACCCAGATGTCTTTGAATCTAATCCAACTGAGGTGGCTCCTAGTTTGGAA

Protein sequence

MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRTGRFDSKNRRSSTTTKEQEEEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPDFWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEEPEASNPDVFESNPTEVAPSLE

Homology

[Close]

BLAST of MS002113 vs. NCBI nr
Match: XP_022134616.1 (uncharacterized protein LOC111006843 [Momordica charantia])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT
Sbjct: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120
           GRFDSKNRRSSTTTKEQEEEEEERNR AEIERDGPNVENAGVAFDVDENLPELPGLQPDF
Sbjct: 61  GRFDSKNRRSSTTTKEQEEEEEERNRMAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120

Query: 121 WEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180
           WEGP+WDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE
Sbjct: 121 WEGPRWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180

Query: 181 PEASNPDVFESNPTEVAPSLE 202
           PEASNPDVFESNPTEVAPSLE
Sbjct: 181 PEASNPDVFESNPTEVAPSLE 201

[Close]

BLAST of MS002113 vs. NCBI nr
Match: XP_038876354.1 (uncharacterized protein LOC120068690 [Benincasa hispida])

HSP 1 Score: 357.8 bits (917), Expect = 6.0e-95
Identity = 184/201 (91.54%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGA GG+GGGILYR+ST+ PSNQFLLRRNALFPPS EARTL+VVQAKKSSFRT
Sbjct: 1   MALTITNGGATGGTGGGILYRSSTRTPSNQFLLRRNALFPPSKEARTLYVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120
           GRFD KNRRSSTTT  QE+EEEERNRTAEI RD PNVENAGVAFDVDENLPELPGLQPDF
Sbjct: 61  GRFDGKNRRSSTTT--QEQEEEERNRTAEILRDSPNVENAGVAFDVDENLPELPGLQPDF 120

Query: 121 WEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180
           WEGPQWD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFKDTPAYKESVQT+E+LEE
Sbjct: 121 WEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEE 180

Query: 181 PEASNPDVFESNPTEVAPSLE 202
           PEASNPDVFESNPTEVAPSLE
Sbjct: 181 PEASNPDVFESNPTEVAPSLE 199

[Close]

BLAST of MS002113 vs. NCBI nr
Match: XP_022987248.1 (uncharacterized protein LOC111484859 [Cucurbita maxima])

HSP 1 Score: 335.1 bits (858), Expect = 4.1e-88
Identity = 177/202 (87.62%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGA  G+GGGILYRTST+ PSNQFL RRNALF PS EARTLHVV +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQFLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQEE-EEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQEE EEEERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQEEEERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
           FWEG QWDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 202
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of MS002113 vs. NCBI nr
Match: XP_023515371.1 (uncharacterized protein LOC111779544 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 176/202 (87.13%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGAA G+GGGILYRTST+ PSNQFL RRNALF PS EARTLHVV +KKSSFR 
Sbjct: 1   MALTITNGGAACGTGGGILYRTSTRTPSNQFLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQEE-EEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST TKEQEE +E+ERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTPTKEQEEQQEDERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
           FWEG QWDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 202
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of MS002113 vs. NCBI nr
Match: KAG6589553.1 (hypothetical protein SDJN03_14976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023239.1 hypothetical protein SDJN02_14264 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.3 bits (848), Expect = 6.0e-87
Identity = 175/202 (86.63%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGA  G+GGGILYRTST+ PSNQ L RRNALF PS EARTLHVV +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQEE-EEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQEE +EEERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQQEEERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
           FWEG QWDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 202
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of MS002113 vs. ExPASy TrEMBL
Match: A0A6J1BYA9 (uncharacterized protein LOC111006843 OS=Momordica charantia OX=3673 GN=LOC111006843 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT
Sbjct: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120
           GRFDSKNRRSSTTTKEQEEEEEERNR AEIERDGPNVENAGVAFDVDENLPELPGLQPDF
Sbjct: 61  GRFDSKNRRSSTTTKEQEEEEEERNRMAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120

Query: 121 WEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180
           WEGP+WDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE
Sbjct: 121 WEGPRWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180

Query: 181 PEASNPDVFESNPTEVAPSLE 202
           PEASNPDVFESNPTEVAPSLE
Sbjct: 181 PEASNPDVFESNPTEVAPSLE 201

[Close]

BLAST of MS002113 vs. ExPASy TrEMBL
Match: A0A6J1JIX0 (uncharacterized protein LOC111484859 OS=Cucurbita maxima OX=3661 GN=LOC111484859 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 177/202 (87.62%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGA  G+GGGILYRTST+ PSNQFL RRNALF PS EARTLHVV +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQFLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQEE-EEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQEE EEEERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQEEEERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
           FWEG QWDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 202
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of MS002113 vs. ExPASy TrEMBL
Match: A0A6J1E7K1 (uncharacterized protein LOC111430129 OS=Cucurbita moschata OX=3662 GN=LOC111430129 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.4e-87
Identity = 174/202 (86.14%), Postives = 182/202 (90.10%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALTITNGGA  G+GGGILYRTST+ PSNQ L RRNALF PS EARTLHVV +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQEE-EEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQEE +EEE+NR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQQEEEQNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
           FWEG QWDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 202
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of MS002113 vs. ExPASy TrEMBL
Match: A0A5A7UV79 (Putative AT-rich interactive domain-containing protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00400 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 175/203 (86.21%), Postives = 181/203 (89.16%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKI-PSNQFLLRRNALFPPSNEARTLHVVQAKKSSFR 60
           M LTITNGGA  G+ GGILYRT T+  PSN FL RRNALF PS EARTLHVVQAKKSSFR
Sbjct: 1   MPLTITNGGATAGTTGGILYRTFTRTPPSNYFLFRRNALFHPSKEARTLHVVQAKKSSFR 60

Query: 61  TGRFDSKNRRSSTTTKEQE-EEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQP 120
           TGRFDSKNRRSSTT KEQ+ EEEEERNRTA IE   P VENAGV FDVDENLPELPGLQP
Sbjct: 61  TGRFDSKNRRSSTTIKEQDKEEEEERNRTAGIEMGSPIVENAGVVFDVDENLPELPGLQP 120

Query: 121 DFWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELL 180
           DFWEGPQWD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFK+TPAYKESVQT+E+L
Sbjct: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKETPAYKESVQTREIL 180

Query: 181 EEPEASNPDVFESNPTEVAPSLE 202
            EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 -EPEASNPDVFESNPTEVAPSLE 202

[Close]

BLAST of MS002113 vs. ExPASy TrEMBL
Match: A0A1S3BW57 (uncharacterized protein LOC103494120 OS=Cucumis melo OX=3656 GN=LOC103494120 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 175/203 (86.21%), Postives = 181/203 (89.16%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKI-PSNQFLLRRNALFPPSNEARTLHVVQAKKSSFR 60
           M LTITNGGA  G+ GGILYRT T+  PSN FL RRNALF PS EARTLHVVQAKKSSFR
Sbjct: 1   MPLTITNGGATAGTTGGILYRTFTRTPPSNYFLFRRNALFHPSKEARTLHVVQAKKSSFR 60

Query: 61  TGRFDSKNRRSSTTTKEQE-EEEEERNRTAEIERDGPNVENAGVAFDVDENLPELPGLQP 120
           TGRFDSKNRRSSTT KEQ+ EEEEERNRTA IE   P VENAGV FDVDENLPELPGLQP
Sbjct: 61  TGRFDSKNRRSSTTIKEQDKEEEEERNRTAGIEMGSPIVENAGVVFDVDENLPELPGLQP 120

Query: 121 DFWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELL 180
           DFWEGPQWD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFK+TPAYKESVQT+E+L
Sbjct: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKETPAYKESVQTREIL 180

Query: 181 EEPEASNPDVFESNPTEVAPSLE 202
            EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 -EPEASNPDVFESNPTEVAPSLE 202

[Close]

BLAST of MS002113 vs. TAIR 10
Match: AT1G73885.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-29
Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 0


Query: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60
           MALT+    ++GG G  I     T    N F   R   FP  N +RT    +  +     
Sbjct: 1   MALTV----SSGGGGARIRCNDLTDSSRNPFSTFRLVNFP--NPSRTEQQEEGNEG---- 60

Query: 61  GRFDSKNRRSSTTTKEQEEEEEERN-RTAEIERDGPNVENAGVAFDVDENLPELPGLQPD 120
             FD +N  S     +++ +    N R     +D P              + +LPGL+PD
Sbjct: 61  --FDGENPPSQIVINDEDGDRTVVNTRFRGDPKDAPKFA-----------IKDLPGLEPD 120

Query: 121 FWEGPQWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLE 180
            +EG +WD LGFF++YLWAFGI FALI+ G+A  TYNEGATDFK+TP YKE++Q+++LL+
Sbjct: 121 PFEGEKWDGLGFFVQYLWAFGILFALISGGLAAGTYNEGATDFKETPVYKEAIQSRDLLD 179

Query: 181 EPEASN-PDVFESNPTEVAPSL 201
           E E+SN  DVFESNPTEVAP++
Sbjct: 181 EAESSNSEDVFESNPTEVAPTI 179

The following BLAST results are available for this feature:

BLAST of MS002113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134616.1	3.2e-104	99.00	uncharacterized protein LOC111006843 [Momordica charantia]	[more]
XP_038876354.1	6.0e-95	91.54	uncharacterized protein LOC120068690 [Benincasa hispida]	[more]
XP_022987248.1	4.1e-88	87.62	uncharacterized protein LOC111484859 [Cucurbita maxima]	[more]
XP_023515371.1	1.2e-87	87.13	uncharacterized protein LOC111779544 [Cucurbita pepo subsp. pepo]	[more]
KAG6589553.1	6.0e-87	86.63	hypothetical protein SDJN03_14976, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS002113 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYA9	1.5e-104	99.00	uncharacterized protein LOC111006843 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JIX0	2.0e-88	87.62	uncharacterized protein LOC111484859 OS=Cucurbita maxima OX=3661 GN=LOC111484859...	[more]
A0A6J1E7K1	8.4e-87	86.14	uncharacterized protein LOC111430129 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A5A7UV79	2.1e-85	86.21	Putative AT-rich interactive domain-containing protein 5A OS=Cucumis melo var. m...	[more]
A0A1S3BW57	2.1e-85	86.21	uncharacterized protein LOC103494120 OS=Cucumis melo OX=3656 GN=LOC103494120 PE=...	[more]

BLAST of MS002113 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73885.1	4.6e-29	42.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..201
None	No IPR available	PANTHER	PTHR36004	AT-RICH INTERACTIVE DOMAIN PROTEIN	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002113.1	MS002113.1	mRNA