MS002107 (gene) Bitter gourd (TR) v1

Overview


Name	MS002107
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 1
Location	scaffold30: 2424572 .. 2424986 (-)
RNA-Seq Expression	MS002107
Synteny	MS002107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGCAATTATCGTAAATGGGCTTATGTCAGGATCATCACCGGCACCATCGTCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTTGAAGTTGGCTATAAGGTTAGATCACTTCTGTTTCAATTAATCTCTCCGACTTATTCTGGGTGAATCGCTTGGATGGAAAGAAAAATTGTCTCGGCTGAAATGGCATTATTCTCTAATCAGACCTTGTTTTAATCTTTCAATTCTGAGATATAGTTTTTTTTTTTGTTGGAAGGTTTGATTGAGGATTTCGTTTCTTTTCTCTTTTGTTTCTGTTTTGATTTGTTTTTTCGGGATGATGCAGGAGAAGGTGAAAGAGAGGTTAAGACAATATGAAGAAGAACTGAAGAAGAAGGAGCAGATGAAAGAACTTGAAGATTCGCTA

mRNA sequence

ATGGTAGGCAATTATCGTAAATGGGCTTATGTCAGGATCATCACCGGCACCATCGTCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGGTGAAAGAGAGGTTAAGACAATATGAAGAAGAACTGAAGAAGAAGGAGCAGATGAAAGAACTTGAAGATTCGCTA

Coding sequence (CDS)

ATGGTAGGCAATTATCGTAAATGGGCTTATGTCAGGATCATCACCGGCACCATCGTCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTTGAAGTTGGCTATAAGGAGAAGGTGAAAGAGAGGTTAAGACAATATGAAGAAGAACTGAAGAAGAAGGAGCAGATGAAAGAACTTGAAGATTCGCTA

Protein sequence

MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELEDSL

Homology

[Close]

BLAST of MS002107 vs. NCBI nr
Match: XP_022134690.1 (uncharacterized protein LOC111006898 [Momordica charantia] >XP_022134691.1 uncharacterized protein LOC111006898 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. NCBI nr
Match: XP_004138234.1 (uncharacterized protein LOC101217575 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 5.2e-21
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVG+ RKWAY+RIITGT+VGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. NCBI nr
Match: KGN63809.2 (hypothetical protein Csa_013239 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 5.2e-21
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVG+ RKWAY+RIITGT+VGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. NCBI nr
Match: XP_038882309.1 (uncharacterized protein LOC120073547 [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 7.5e-20
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          M+G+ RKWAY+RII GTIVGGVLGFYVMHRVE+GYKEK+KERL+QYE ELKKKEQMKELE
Sbjct: 1  MIGSSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. NCBI nr
Match: KAA0058058.1 (ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >TYK28404.1 ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 9.8e-20
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVG+ RKWAY RII GTIVGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKE+MKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. ExPASy TrEMBL
Match: A0A6J1BYI4 (uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006898 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. ExPASy TrEMBL
Match: A0A1S3BW37 (uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVG+ RKWAY RII GTIVGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKE+MKELE
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90

Query: 61 DSL 64
          DSL
Sbjct: 91 DSL 93

[Close]

BLAST of MS002107 vs. ExPASy TrEMBL
Match: A0A5A7USD3 (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00320 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          MVG+ RKWAY RII GTIVGGVLGFYVMHRVEVGYKEK+KERL+QYE ELKKKE+MKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of MS002107 vs. ExPASy TrEMBL
Match: A0A6J1E2A1 (uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC111430128 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
          M+G+ R WAY+RII GTIVGGVLGFYVMHRVEVGYKEK+KERLRQYE ELKKKEQMKELE
Sbjct: 1  MMGSSRSWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 60

Query: 61 DS 63
          DS
Sbjct: 61 DS 62

[Close]

BLAST of MS002107 vs. ExPASy TrEMBL
Match: A0A6J1JJ44 (uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60
           M+G+ R WAY+RII GTIVGGVLGFYVMHRVEVGYKEK+KERLRQYE ELKKKEQMKELE
Sbjct: 45  MMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 104

Query: 61  DS 63
           DS
Sbjct: 105 DS 106

[Close]

BLAST of MS002107 vs. TAIR 10
Match: AT3G18510.1 (unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 8  WAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKEL 60
          W Y RII GT++GG LGFYVMHR+EV YK +++E L QYE++++K+++ + L
Sbjct: 8  WGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEEENL 59

The following BLAST results are available for this feature:

BLAST of MS002107 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134690.1	3.8e-24	100.00	uncharacterized protein LOC111006898 [Momordica charantia] >XP_022134691.1 uncha...	[more]
XP_004138234.1	5.2e-21	88.89	uncharacterized protein LOC101217575 [Cucumis sativus]	[more]
KGN63809.2	5.2e-21	88.89	hypothetical protein Csa_013239 [Cucumis sativus]	[more]
XP_038882309.1	7.5e-20	85.71	uncharacterized protein LOC120073547 [Benincasa hispida]	[more]
KAA0058058.1	9.8e-20	87.30	ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >...	[more]

BLAST of MS002107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYI4	1.9e-24	100.00	uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3BW37	4.7e-20	87.30	uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=...	[more]
A0A5A7USD3	4.7e-20	87.30	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa ...	[more]
A0A6J1E2A1	4.0e-19	87.10	uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A6J1JJ44	5.2e-19	87.10	uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905...	[more]

BLAST of MS002107 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18510.1	1.5e-10	53.85	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002107.1	MS002107.1	mRNA