MS002095 (gene) Bitter gourd (TR) v1

Overview
NameMS002095
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionResponse regulatory domain-containing protein
Locationscaffold30: 2336412 .. 2336579 (-)
RNA-Seq ExpressionMS002095
SyntenyMS002095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGACGACGGAGATGAATATGAAGGCAGCCGGAAAGTCTATTGCCGAATGGGGCTTTTACTTCCTCGAGAAGCCGATTTCCACGAAGAACATCGAACTTGTTTGGCAACTCGTTTACAGGAAAATCAGAAACCCTAGGCCGAAAAATGGGGGGAGAAAATGCCAATTG

mRNA sequence

ACGACGACGGAGATGAATATGAAGGCAGCCGGAAAGTCTATTGCCGAATGGGGCTTTTACTTCCTCGAGAAGCCGATTTCCACGAAGAACATCGAACTTGTTTGGCAACTCGTTTACAGGAAAATCAGAAACCCTAGGCCGAAAAATGGGGGGAGAAAATGCCAATTG

Coding sequence (CDS)

ACGACGACGGAGATGAATATGAAGGCAGCCGGAAAGTCTATTGCCGAATGGGGCTTTTACTTCCTCGAGAAGCCGATTTCCACGAAGAACATCGAACTTGTTTGGCAACTCGTTTACAGGAAAATCAGAAACCCTAGGCCGAAAAATGGGGGGAGAAAATGCCAATTG

Protein sequence

TTTEMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL
Homology
BLAST of MS002095 vs. NCBI nr
Match: XP_022150571.1 (two-component response regulator ORR24-like [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 2  TTEMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGG 52
          +TEMNMKAAGKSIAE GF+FLEKPIS ++IELVWQLVYRKIRNPR  N G
Sbjct: 30 STEMNMKAAGKSIAESGFHFLEKPISMEDIELVWQLVYRKIRNPRANNLG 79

BLAST of MS002095 vs. NCBI nr
Match: XP_011655794.1 (two-component response regulator ORR24 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4  EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
          EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRKIRNPR KN G   +L
Sbjct: 41 EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKIRNPRAKNLGENAKL 93

BLAST of MS002095 vs. NCBI nr
Match: KGN52115.1 (hypothetical protein Csa_009400 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4  EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
          EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRKIRNPR KN G   +L
Sbjct: 4  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKIRNPRAKNLGENAKL 56

BLAST of MS002095 vs. NCBI nr
Match: KAA0034592.1 (two-component response regulator ORR24-like [Cucumis melo var. makuwa] >TYK09143.1 two-component response regulator ORR24-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4   EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
           EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRK+RNPR K+ G   +L
Sbjct: 92  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKVRNPRAKSLGENTKL 144

BLAST of MS002095 vs. NCBI nr
Match: XP_008447014.1 (PREDICTED: two-component response regulator ORR24-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4  EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
          EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRK+RNPR K+ G   +L
Sbjct: 4  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKVRNPRAKSLGENTKL 56

BLAST of MS002095 vs. ExPASy TrEMBL
Match: A0A6J1DBX2 (two-component response regulator ORR24-like OS=Momordica charantia OX=3673 GN=LOC111018680 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 2  TTEMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGG 52
          +TEMNMKAAGKSIAE GF+FLEKPIS ++IELVWQLVYRKIRNPR  N G
Sbjct: 30 STEMNMKAAGKSIAESGFHFLEKPISMEDIELVWQLVYRKIRNPRANNLG 79

BLAST of MS002095 vs. ExPASy TrEMBL
Match: A0A0A0KR71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610490 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4  EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
          EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRKIRNPR KN G   +L
Sbjct: 4  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKIRNPRAKNLGENAKL 56

BLAST of MS002095 vs. ExPASy TrEMBL
Match: A0A5D3CBB1 (Two-component response regulator ORR24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001340 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4   EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
           EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRK+RNPR K+ G   +L
Sbjct: 92  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKVRNPRAKSLGENTKL 144

BLAST of MS002095 vs. ExPASy TrEMBL
Match: A0A1S3BGE1 (two-component response regulator ORR24-like OS=Cucumis melo OX=3656 GN=LOC103489562 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 4  EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGGRKCQL 57
          EM+MK AG++IAEWG YFLEKPIS ++IELVWQ+VYRK+RNPR K+ G   +L
Sbjct: 4  EMDMKTAGRAIAEWGCYFLEKPISMEDIELVWQIVYRKVRNPRAKSLGENTKL 56

BLAST of MS002095 vs. ExPASy TrEMBL
Match: A0A6J1JP16 (two-component response regulator ARR14-like OS=Cucurbita maxima OX=3661 GN=LOC111487601 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 4   EMNMKAAGKSIAEWGFYFLEKPISTKNIELVWQLVYRKIRNPRPKNGG 52
           E +MK +G++IAEWG++FLEKPIS ++IELVWQ+VYRKIRNPR +N G
Sbjct: 91  ERDMKTSGRAIAEWGYHFLEKPISMEDIELVWQIVYRKIRNPRARNLG 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150571.12.1e-1382.00two-component response regulator ORR24-like [Momordica charantia][more]
XP_011655794.13.5e-1371.70two-component response regulator ORR24 [Cucumis sativus][more]
KGN52115.13.5e-1371.70hypothetical protein Csa_009400 [Cucumis sativus][more]
KAA0034592.12.3e-1267.92two-component response regulator ORR24-like [Cucumis melo var. makuwa] >TYK09143... [more]
XP_008447014.12.3e-1267.92PREDICTED: two-component response regulator ORR24-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBX21.0e-1382.00two-component response regulator ORR24-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0KR711.7e-1371.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610490 PE=4 SV=1[more]
A0A5D3CBB11.1e-1267.92Two-component response regulator ORR24-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BGE11.1e-1267.92two-component response regulator ORR24-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A6J1JP161.6e-1168.75two-component response regulator ARR14-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002095.1MS002095.1mRNA