MS002088 (gene) Bitter gourd (TR) v1

Overview


Name	MS002088
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	nuclear factor Y, subunit B13
Location	scaffold30: 2299190 .. 2300893 (+)
RNA-Seq Expression	MS002088
Synteny	MS002088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACCATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGTGTTGCAAGAGATGCGCAAGATCTTCTGATTGAGTGTTGTGTAGGTGAGAATATCTTGTTTTGCCATTTTATTTGTATATTTTAATATTTGATGTGTCAGAACTTGGTGTTGGTTTCTTGTACTGCTTTTAATAGCTGTTTGTGGTTCTATTGTTTTTCCAACAATATATGACCTGTATTTCTCTTTGGACACTGCATTTGCTGTACTATTTTAGGATTTAGTAATTTTTATTTTAGTACTTTTTACTATTGTGCACCTCACCCTCCTCCCCCCGTGGCTATGACTAATTTTGATTTCTTACTAAAGAATGCACTTCTTTTATTGTGGTACTCTTGCAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTCGAGGTCTATGGACTATCCAAGTTTCTCTTATATTCTTAATAATATATATTTATAGGTGTTGATTTCTGTTATTGTTCGGGATAATGCATGCTACCATTGTCTTTTTTACCATCTAGCTCCATAAAATTCAAATTTTACATTCTTAGGGGTCGTTTTCATTATTACTTGTTCAGCTGTACTACAAAAGTACCAAATCATAAGCTATAAATAAATGTTCTTCAGTGGAATAAGAATTTCAATGCCTTAACTATACAGATTAAGGAATCATTTTAGTGCTCTATTTTGATTTTTAGTACTGCTTATATTGTTCTATCTAAATCTCTGCAAATGTTTTGGGCACAGAATTTATTTTGAATCTACTGTGTTCTTATATAGTTGACCCAAGCTTGGGGTGCATTAAGCAGTTCTGACAGAACATCTTACTTAGTTTCCTCCAATTTCACAGAAAAGGAGATATAAATCACATTCACAAAATATGTTAACAGTGTGACGTGTAGTCTGATATATTAGAATGCTAGTAGCCTAGTAGTGAAGTCTTTCATTTTTTTACCTAGAGTAGCATATTTGGATTGTATTCATAACATTTTCATTCTTCTGTTTGAAGAAGGGTGATTGGCAGTTTCTACAAGGCTACTTTTGTATTATGTCTGCTCTTGGACTTACAGGTATGATTATATCTGATCAGGTGCTTGGTTTTAGTGAGTACATCGAGGAAGTTTATGCTGCATATGAACAGCACAGGCTCGAAACTATGGTAATGCTTCAGTATATCTGCTAATAGTATGTGTTCAATGAGTTCAATGGATTAAATGAAGCGATTGGTCATATATCTAATGAAAAGTTTGTTTCTTGTTAAAAAAAAAATTGAAGCGACTGGTTGTATAGAAATTCTGTGAGGTCCAGATAATTAGTAGCTTGTTTTGTTCCTTAAAGAGAAGCCTTTTCTATCATCCTCATAACTAACATTTTATCATTGCAAACTCAAGTTCTGGCTTAAATATGAGCATCTCAAGGCAGCGAGAAGCACTAACATTTTTATTTTCCTCTCTGTTGAGAAATCTCTCCAGCAAGACTCCTTGAAAGGTGGAAAGTGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCTCGTGCAAGAATGAATGGCAACAACACTGCTCCAAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGC

mRNA sequence

GCGACCATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGTGTTGCAAGAGATGCGCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTCGAGGTGCTTGGTTTTAGTGAGTACATCGAGGAAGTTTATGCTGCATATGAACAGCACAGGCTCGAAACTATGAAATCTCTCCAGCAAGACTCCTTGAAAGGTGGAAAGTGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCTCGTGCAAGAATGAATGGCAACAACACTGCTCCAAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGC

Coding sequence (CDS)

GCGACCATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTACGTGTTGCAAGAGATGCGCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTCGAGGTGCTTGGTTTTAGTGAGTACATCGAGGAAGTTTATGCTGCATATGAACAGCACAGGCTCGAAACTATGAAATCTCTCCAGCAAGACTCCTTGAAAGGTGGAAAGTGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCTCGTGCAAGAATGAATGGCAACAACACTGCTCCAAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGC

Protein sequence

ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGNNTAPKQPEPEQSLES

Homology

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BLAST of MS002088 vs. NCBI nr
Match: XP_022134978.1 (protein Dr1 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 273.9 bits (699), Expect = 8.0e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNGNNTAPKQPEPEQSLES
Sbjct: 139 RARMNGNNTAPKQPEPEQSLES 160

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BLAST of MS002088 vs. NCBI nr
Match: XP_038879126.1 (protein Dr1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMK LQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQPEPEQSLES
Sbjct: 139 RARMNGSNTAPKQPEPEQSLES 160

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BLAST of MS002088 vs. NCBI nr
Match: XP_022929360.1 (protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_023000849.1 protein Dr1 homolog isoform X1 [Cucurbita maxima] >XP_023530792.1 protein Dr1 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-67
Identity = 138/142 (97.18%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMK+LQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQ EPEQSLES
Sbjct: 139 RARMNGSNTAPKQLEPEQSLES 160

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BLAST of MS002088 vs. NCBI nr
Match: XP_022921863.1 (protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_022987314.1 protein Dr1 homolog isoform X1 [Cucurbita maxima] >XP_023516546.1 protein Dr1 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 6.3e-67
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQPEPEQSLES
Sbjct: 139 RARMNGSNTAPKQPEPEQSLES 160

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BLAST of MS002088 vs. NCBI nr
Match: XP_011648700.1 (protein Dr1 homolog isoform X1 [Cucumis sativus] >KGN63793.2 hypothetical protein Csa_013109 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYI EVYAAYEQHR+ETMK LQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIAEVYAAYEQHRIETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQ EPEQSLES
Sbjct: 139 RARMNGSNTAPKQSEPEQSLES 160

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BLAST of MS002088 vs. ExPASy Swiss-Prot
Match: P49592 (Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-53
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+VC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EYIEEVYAAYEQH+ ETM    QD+ +  KW+ GA+MTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGAQMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG  + P+   PE    S
Sbjct: 139 RARMNGGVSVPQPEHPETDQRS 156

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BLAST of MS002088 vs. ExPASy Swiss-Prot
Match: Q55DJ5 (Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 62/138 (44.93%), Postives = 97/138 (70.29%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           AT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C +E+KRTIA EHV+KA
Sbjct: 16  ATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKA 75

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L  LGFS+Y ++V   Y++H+LE    +   S    K+ N  + T E+ + EQQ +FA+A
Sbjct: 76  LTELGFSDYTQKVSDVYDKHKLE----VSTKSKSSKKFENLGKPT-EQLIREQQLLFAKA 135

Query: 121 RARMNGNNTAPKQPEPEQ 139
           R+    +  A +  + +Q
Sbjct: 136 RSAFQASPEAQQLQQLQQ 148

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BLAST of MS002088 vs. ExPASy Swiss-Prot
Match: Q5ZMV3 (Protein Dr1 OS=Gallus gallus OX=9031 GN=DR1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-22
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           A + K+IKE L P+VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+PEHV++A
Sbjct: 16  AAINKMIKETL-PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 75

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAE---MTEEEALAEQQRMF 120
           LE LGF  YI EV         E ++  +  +LK  K S+  E   + EEE L +QQ +F
Sbjct: 76  LESLGFGSYISEV--------KEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELF 130

Query: 121 AEAR 122
           A+AR
Sbjct: 136 AKAR 130

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BLAST of MS002088 vs. ExPASy Swiss-Prot
Match: Q01658 (Protein Dr1 OS=Homo sapiens OX=9606 GN=DR1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-22
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           A + K+IKE L P+VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+PEHV++A
Sbjct: 16  AAINKMIKETL-PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 75

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAE---MTEEEALAEQQRMF 120
           LE LGF  YI EV         E ++  +  +LK  K S+  E   + EEE L +QQ +F
Sbjct: 76  LESLGFGSYISEV--------KEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELF 130

Query: 121 AEAR 122
           A+AR
Sbjct: 136 AKAR 130

[Close]

BLAST of MS002088 vs. ExPASy Swiss-Prot
Match: Q91WV0 (Protein Dr1 OS=Mus musculus OX=10090 GN=Dr1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-22
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           A + K+IKE L P+VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+PEHV++A
Sbjct: 16  AAINKMIKETL-PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 75

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAE---MTEEEALAEQQRMF 120
           LE LGF  YI EV         E ++  +  +LK  K S+  E   + EEE L +QQ +F
Sbjct: 76  LESLGFGSYISEV--------KEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELF 130

Query: 121 AEAR 122
           A+AR
Sbjct: 136 AKAR 130

[Close]

BLAST of MS002088 vs. ExPASy TrEMBL
Match: A0A6J1C3I2 (protein Dr1 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007097 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNGNNTAPKQPEPEQSLES
Sbjct: 139 RARMNGNNTAPKQPEPEQSLES 160

[Close]

BLAST of MS002088 vs. ExPASy TrEMBL
Match: A0A6J1KL43 (protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495169 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 138/142 (97.18%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMK+LQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQ EPEQSLES
Sbjct: 139 RARMNGSNTAPKQLEPEQSLES 160

[Close]

BLAST of MS002088 vs. ExPASy TrEMBL
Match: A0A6J1EU70 (protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435956 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 138/142 (97.18%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHRLETMK+LQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQ EPEQSLES
Sbjct: 139 RARMNGSNTAPKQLEPEQSLES 160

[Close]

BLAST of MS002088 vs. ExPASy TrEMBL
Match: A0A6J1JII3 (protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQPEPEQSLES
Sbjct: 139 RARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of MS002088 vs. ExPASy TrEMBL
Match: A0A6J1E503 (protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           LEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA
Sbjct: 79  LEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG+NTAPKQPEPEQSLES
Sbjct: 139 RARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of MS002088 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+VC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EYIEEVYAAYEQH+ ETM    QD+ +  KW+ GA+MTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGAQMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG  + P+   PE    S
Sbjct: 139 RARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of MS002088 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54
Identity = 110/142 (77.46%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+VC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EYIEEVYAAYEQH+ ETM    QD+ +  KW+ GA+MTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGAQMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG  + P+   PE    S
Sbjct: 139 RARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of MS002088 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-53
Identity = 109/142 (76.76%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+VC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EYIEEVYAAYEQH+ ETM     D+ +  KW+ GA+MTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYIEEVYAAYEQHKYETM-----DTQRSVKWNPGAQMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPEPEQSLES 143
           RARMNG  + P+   PE    S
Sbjct: 139 RARMNGGVSVPQPEHPETDQRS 155

[Close]

BLAST of MS002088 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-53
Identity = 110/135 (81.48%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNEVC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EY+EEVYAAYEQH+ ETM    QDS +  K ++GAEMTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYVEEVYAAYEQHKYETM----QDSQRSVKMNSGAEMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPE 136
           RARMNG  T P QPE
Sbjct: 139 RARMNGGVTVP-QPE 148

[Close]

BLAST of MS002088 vs. TAIR 10
Match: AT5G08190.2 (nuclear factor Y, subunit B12 )

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKA 60
           ATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNEVC+KE+KRTIAPEHVLKA
Sbjct: 19  ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKA 78

Query: 61  LEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEA 120
           L+VLGF EY+EEVYAAYEQH+ ETM     DS +  K ++GAEMTEEEA AEQQRMFAEA
Sbjct: 79  LQVLGFGEYVEEVYAAYEQHKYETM-----DSQRSVKMNSGAEMTEEEAAAEQQRMFAEA 138

Query: 121 RARMNGNNTAPKQPE 136
           RARMNG  T P QPE
Sbjct: 139 RARMNGGVTVP-QPE 147

The following BLAST results are available for this feature:

BLAST of MS002088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134978.1	8.0e-70	100.00	protein Dr1 homolog isoform X1 [Momordica charantia]	[more]
XP_038879126.1	1.5e-68	98.59	protein Dr1 homolog isoform X1 [Benincasa hispida]	[more]
XP_022929360.1	2.2e-67	97.18	protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_023000849.1 protein Dr1 ...	[more]
XP_022921863.1	6.3e-67	97.18	protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_022987314.1 protein Dr1 ...	[more]
XP_011648700.1	1.1e-66	96.48	protein Dr1 homolog isoform X1 [Cucumis sativus] >KGN63793.2 hypothetical protei...	[more]

BLAST of MS002088 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49592	4.1e-53	77.46	Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1	[more]
Q55DJ5	2.1e-25	44.93	Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1	[more]
Q5ZMV3	2.2e-22	49.19	Protein Dr1 OS=Gallus gallus OX=9031 GN=DR1 PE=2 SV=1	[more]
Q01658	2.2e-22	49.19	Protein Dr1 OS=Homo sapiens OX=9606 GN=DR1 PE=1 SV=1	[more]
Q91WV0	2.2e-22	49.19	Protein Dr1 OS=Mus musculus OX=10090 GN=Dr1 PE=1 SV=1	[more]

BLAST of MS002088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3I2	3.9e-70	100.00	protein Dr1 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007097 PE...	[more]
A0A6J1KL43	1.1e-67	97.18	protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495169 PE=4 ...	[more]
A0A6J1EU70	1.1e-67	97.18	protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435956 PE=...	[more]
A0A6J1JII3	3.1e-67	97.18	protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 ...	[more]
A0A6J1E503	3.1e-67	97.18	protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=...	[more]

BLAST of MS002088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23090.2	2.9e-54	77.46	nuclear factor Y, subunit B13	[more]
AT5G23090.1	2.9e-54	77.46	nuclear factor Y, subunit B13	[more]
AT5G23090.4	1.1e-53	76.76	nuclear factor Y, subunit B13	[more]
AT5G08190.1	4.3e-53	81.48	nuclear factor Y, subunit B12	[more]
AT5G08190.2	1.6e-52	80.74	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..131 e-value: 1.2E-36 score: 127.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 1..128
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 1..61 e-value: 1.4E-19 score: 70.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
None	No IPR available	PANTHER	PTHR47173:SF2	PROTEIN DR1 HOMOLOG	coord: 1..141
IPR044255	Protein Dr1 homolog	PANTHER	PTHR47173	PROTEIN DR1 HOMOLOG	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002088.1	MS002088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046982	protein heterodimerization activity