MS002070 (gene) Bitter gourd (TR) v1

Overview
NameMS002070
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein B-like
Locationscaffold30: 2193236 .. 2193418 (+)
RNA-Seq ExpressionMS002070
SyntenyMS002070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

mRNA sequence

CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

Coding sequence (CDS)

CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

Protein sequence

HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL
Homology
BLAST of MS002070 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1   HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRG 60
           HNFIDTGPGPY VAPPMCDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRG
Sbjct: 65  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 124

Query: 61  L 62
           L
Sbjct: 125 L 125

BLAST of MS002070 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 8.9e-18
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY V PP CDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

BLAST of MS002070 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK QIV P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

BLAST of MS002070 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK Q V P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 67

BLAST of MS002070 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 17 MCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          MCDPM+HGQ QPY  ++PPQG TK Q V P RET S+GDGFCRGL
Sbjct: 1  MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 45

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1   HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRG 60
           HNFIDTGPGPY VAPPMCDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRG
Sbjct: 63  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 122

Query: 61  L 62
           L
Sbjct: 123 L 123

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY V PP CDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK QIV P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652444.14.6e-2280.33hypothetical protein Csa_013973 [Cucumis sativus][more]
KAA0058026.18.9e-1875.44hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa][more]
XP_022969088.11.2e-1777.19cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi... [more]
KAG7021578.11.7e-1675.44hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6587617.12.6e-0971.11hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPD82.2e-2280.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1[more]
A0A5A7UV384.3e-1875.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1HZZ25.6e-1877.19cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002070.1MS002070.1mRNA