MS002070 (gene) Bitter gourd (TR) v1

Overview


Name	MS002070
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	scaffold30: 2193236 .. 2193418 (+)
RNA-Seq Expression	MS002070
Synteny	MS002070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

mRNA sequence

CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

Coding sequence (CDS)

CATAACTTTATAGATACTGGACCAGGTCCTTACTCAGTTGCCCCACCTATGTGTGATCCAATGAAACATGGTCAGTTTCAGCCATACCCTCCAGTTGTACCTCCTCAAGGGGGAACCAAGCCTCAAATTGTACCTCCTCTAAGGGAAACCAAGTCTAGAGGCGATGGGTTTTGCAGAGGATTG

Protein sequence

HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL

Homology

[Close]

BLAST of MS002070 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRG 60
           HNFIDTGPGPY VAPPMCDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRG
Sbjct: 65  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 124

Query: 61  L 62
           L
Sbjct: 125 L 125

[Close]

BLAST of MS002070 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 8.9e-18
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY V PP CDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]

BLAST of MS002070 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK QIV P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of MS002070 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK Q V P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 67

[Close]

BLAST of MS002070 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 17 MCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          MCDPM+HGQ QPY  ++PPQG TK Q V P RET S+GDGFCRGL
Sbjct: 1  MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 45

[Close]

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   HNFIDTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRG 60
           HNFIDTGPGPY VAPPMCDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRG
Sbjct: 63  HNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 122

Query: 61  L 62
           L
Sbjct: 123 L 123

[Close]

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY V PP CDPM+HGQ QPYPP+VPPQG TK + VPP  +TK RGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]

BLAST of MS002070 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 5  DTGPGPYSVAPPMCDPMKHGQFQPYPPVVPPQGGTKPQIVPPLRETKSRGDGFCRGL 62
          DTGPGPY VAPPMCDPM+HGQ QPY  ++PPQG TK QIV P RET S+GDGFCRGL
Sbjct: 11 DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

The following BLAST results are available for this feature:

BLAST of MS002070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652444.1	4.6e-22	80.33	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
KAA0058026.1	8.9e-18	75.44	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
XP_022969088.1	1.2e-17	77.19	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]
KAG7021578.1	1.7e-16	75.44	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587617.1	2.6e-09	71.11	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS002070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD8	2.2e-22	80.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A5A7UV38	4.3e-18	75.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1HZZ2	5.6e-18	77.19	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]

BLAST of MS002070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002070.1	MS002070.1	mRNA