MS002051 (gene) Bitter gourd (TR) v1

Overview
NameMS002051
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold30: 2057846 .. 2057971 (+)
RNA-Seq ExpressionMS002051
SyntenyMS002051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTGACCAGTGATTTACCGACCACTAGATCAATAAAGAATCTCTCCAAAATTTGCTCTTTGATTAATGATTCATCGGCCACTACCACCTTATTCTCAAACCTGGCGGCTCGATTGATTGGCACA

mRNA sequence

TCTTTGACCAGTGATTTACCGACCACTAGATCAATAAAGAATCTCTCCAAAATTTGCTCTTTGATTAATGATTCATCGGCCACTACCACCTTATTCTCAAACCTGGCGGCTCGATTGATTGGCACA

Coding sequence (CDS)

TCTTTGACCAGTGATTTACCGACCACTAGATCAATAAAGAATCTCTCCAAAATTTGCTCTTTGATTAATGATTCATCGGCCACTACCACCTTATTCTCAAACCTGGCGGCTCGATTGATTGGCACA

Protein sequence

SLTSDLPTTRSIKNLSKICSLINDSSATTTLFSNLAARLIGT
Homology
[Close]
BLAST of MS002051 vs. NCBI nr
Match: RXH77006.1 (hypothetical protein DVH24_019894 [Malus domestica])

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   SLTSDLPTTRSIKNLSKICSLINDSSATT----TLFSNLAARLIGT 43
           SL SD P T S+KNLSKIC LI+DS ATT    TLFSNLAARLIGT
Sbjct: 203 SLISDSPATTSMKNLSKICFLISDSPATTFRDPTLFSNLAARLIGT 248

[Close]
BLAST of MS002051 vs. NCBI nr
Match: TQD69937.1 (hypothetical protein C1H46_044529 [Malus baccata])

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   SLTSDLPTTRSIKNLSKICSLINDSSATT----TLFSNLAARLIGT 43
           SL SD P T S+KNLSKIC LI+DS ATT    TLFSNLAARLIGT
Sbjct: 245 SLISDSPATTSMKNLSKICFLISDSPATTFRDPTLFSNLAARLIGT 290

[Close]
BLAST of MS002051 vs. ExPASy TrEMBL
Match: A0A498I067 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019894 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-05
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   SLTSDLPTTRSIKNLSKICSLINDSSATT----TLFSNLAARLIGT 43
           SL SD P T S+KNLSKIC LI+DS ATT    TLFSNLAARLIGT
Sbjct: 203 SLISDSPATTSMKNLSKICFLISDSPATTFRDPTLFSNLAARLIGT 248

[Close]
BLAST of MS002051 vs. ExPASy TrEMBL
Match: A0A540K6T8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044529 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-05
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   SLTSDLPTTRSIKNLSKICSLINDSSATT----TLFSNLAARLIGT 43
           SL SD P T S+KNLSKIC LI+DS ATT    TLFSNLAARLIGT
Sbjct: 245 SLISDSPATTSMKNLSKICFLISDSPATTFRDPTLFSNLAARLIGT 290

The following BLAST results are available for this feature:
BLAST of MS002051 vs. NCBI nr
Match NameE-valueIdentityDescription
RXH77006.11.7e-0473.91hypothetical protein DVH24_019894 [Malus domestica][more]
TQD69937.11.7e-0473.91hypothetical protein C1H46_044529 [Malus baccata][more]
BLAST of MS002051 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS002051 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498I0678.4e-0573.91Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019894 PE=4 SV=1[more]
A0A540K6T88.4e-0573.91Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_044529 PE=4 SV=1[more]
BLAST of MS002051 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002051.1MS002051.1mRNA