MS002036 (gene) Bitter gourd (TR) v1

Overview


Name	MS002036
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein 3, mitochondrial-like
Location	scaffold30: 1940863 .. 1943005 (-)
RNA-Seq Expression	MS002036
Synteny	MS002036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAACAAGAGGGTTGGATCGGATTTTCAGGCTTCTAGTTTGTCTATCTGCCAAGCCGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTTCTCTAAGGATACTTGATTTTTTCTTCGTGGAACATGAAGTCGCCAATTAATTTTTCTTTATTTTGTGCCTGTATGCATGTTTATGATGCAGGTATTTCGTATGGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTAATTGAAGGTATATCATCAACTCTTTTACATTGAGTGGTTGAACGTGATGGGAGGAGAGCCTTTATTTCTTATTTTCTCTTATCTCAATTAAAAAGAACGATTTAAATATTTTTTTACAAGCCTTCAGTTGCGTGTTTTTAACATTCCACATCAGAGTGATACACCGATACTGGGATCACATTTTACGCAACAAAAATAAAATAAAAAATGAACAAACTTTTGGGACCAGTATGATCGAATCTTCTTGGGAATTGTTTTTTTCTGAGTTATGGCCGAGCTGGTCGTTTCATTGTTTACCTTTTTTTCCCTCCCCCATTATAGCTAGGGTCATCGTGGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATTCAGGCGTTGGATGGACAGGTAATGATTAATTTGTCGGCCCAATGTAATTAAAGGATGATGCGTTGTGTTATGTTCATATCCCGTAATGTACTGTTGTTGAATTAGTGTATCACTGCAGTTAAAATGTCTGCTTTCTTTTCCTTTGGACAAGGTGCCACTGTGTTACTTTCATGTAGGATACTGTATCTAGTGTGTGTATTTATGTTTACGGATCTTATGCTAGTGTTTTCATTTTATATTGTCGTATTCCCCATCTTCACTTGCACTAGCAAATATGGCAGTGACTGCCTCGTAGCAATATTTCTATAACCATTGCAACTTCCATACCATTGAGGGCTTGAAAATGCGGACATGTAAAAGCTAATAGCATTCCTTCCTCTATTGTGTACTGAAGTAGATATTTTGTCGGAAGTTGTCTTGCTGATAAGTTTTACTTTTCTACATATATCTTTTATTTAGAAAGAATGGAAGACGAGTGATTAATGTGAGTGGTGTATATTGGAGACTTGTCCCAACTTCTTTTATAATGCTGGCAGCTATTCGTCGTTCATGTTATAGCAGCCGTTCCTCTGTTTTATTCTCTCAACATTAGGTAGTATATTATGGTACAAAGTTGCCATCAAGAATTTTTTCTTTTAAAAAATGTTAAAGAACGGAATGAGTGATTAACATAAGCGGAATTTGGAGGCTTGTTCCACCTTTGAATCTACGAGATGCATTTTTTTTCTAAAGTTGATTTATTTTGGTTCTCAATATTTGCCAAACCAAAGATGTTCAACGACTTAGGTTATTACTGCTCGTTTTATTTTTTAAACAGGATCTTCATGGCCGTCGTGTAAGGGTGAATTATGCTAATGATAGAAGTCGAGGTATTGGAGGTGGCGGCTATGGCGGTGGCGGCTATGGGGGTGGTTCTGGTGGCTACGGTGGTGGTGGCTATGGAGGTGGTTCTGGTGGATATGGAGGTGGTGGCTATGGTGGTGGCGGCGGTTCTGGTGGTTACGGTGTTGGTGGTGCTGGTGGAGGCTACGGTGGGAGTGGAGGAGGCTATGGCGACGGTAGTGGTGGATATGGTTATAATGCCACCGGCAATTTGGCCAGTGACAGCCAGGGAAGTGTTGGCGTAGGGGGTGGCTTTGGTGGGAATGATGCTGGCTATAATAATGCCGCTAGCAATTCTGATGGGGGAAACACATACGCAAGTGGGGCTACCGCTGGTTTTGGTACCGGCAGTGGAAATTACAACGTTGCTGGTGGCGATGGCGGTGGCAACGACTACTTTGCCAGCAGTGGATACTCTGGTGGGGATCAATTTAGCAGCAACGAAACAAACACCGCAAATGCTGCATCAGGAGATCAAGACCCAGGCGAACAACTTGATGGAAATTACAGGGATGACGATGACGATGCAAATGACTTCGCCAAAAGAGCC

mRNA sequence

ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAACAAGAGGGTTGGATCGGATTTTCAGGCTTCTAGTTTGTCTATCTGCCAAGCCGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTATTTCGTATGGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTAATTGAAGCTAGGGTCATCGTGGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATTCAGGCGTTGGATGGACAGGATCTTCATGGCCGTCGTGTAAGGGTGAATTATGCTAATGATAGAAGTCGAGGTATTGGAGGTGGCGGCTATGGCGGTGGCGGCTATGGGGGTGGTTCTGGTGGCTACGGTGGTGGTGGCTATGGAGGTGGTTCTGGTGGATATGGAGGTGGTGGCTATGGTGGTGGCGGCGGTTCTGGTGGTTACGGTGTTGGTGGTGCTGGTGGAGGCTACGGTGGGAGTGGAGGAGGCTATGGCGACGGTAGTGGTGGATATGGTTATAATGCCACCGGCAATTTGGCCAGTGACAGCCAGGGAAGTGTTGGCGTAGGGGGTGGCTTTGGTGGGAATGATGCTGGCTATAATAATGCCGCTAGCAATTCTGATGGGGGAAACACATACGCAAGTGGGGCTACCGCTGGTTTTGGTACCGGCAGTGGAAATTACAACGTTGCTGGTGGCGATGGCGGTGGCAACGACTACTTTGCCAGCAGTGGATACTCTGGTGGGGATCAATTTAGCAGCAACGAAACAAACACCGCAAATGCTGCATCAGGAGATCAAGACCCAGGCGAACAACTTGATGGAAATTACAGGGATGACGATGACGATGCAAATGACTTCGCCAAAAGAGCC

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAACAAGAGGGTTGGATCGGATTTTCAGGCTTCTAGTTTGTCTATCTGCCAAGCCGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTATTTCGTATGGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTAATTGAAGCTAGGGTCATCGTGGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATTCAGGCGTTGGATGGACAGGATCTTCATGGCCGTCGTGTAAGGGTGAATTATGCTAATGATAGAAGTCGAGGTATTGGAGGTGGCGGCTATGGCGGTGGCGGCTATGGGGGTGGTTCTGGTGGCTACGGTGGTGGTGGCTATGGAGGTGGTTCTGGTGGATATGGAGGTGGTGGCTATGGTGGTGGCGGCGGTTCTGGTGGTTACGGTGTTGGTGGTGCTGGTGGAGGCTACGGTGGGAGTGGAGGAGGCTATGGCGACGGTAGTGGTGGATATGGTTATAATGCCACCGGCAATTTGGCCAGTGACAGCCAGGGAAGTGTTGGCGTAGGGGGTGGCTTTGGTGGGAATGATGCTGGCTATAATAATGCCGCTAGCAATTCTGATGGGGGAAACACATACGCAAGTGGGGCTACCGCTGGTTTTGGTACCGGCAGTGGAAATTACAACGTTGCTGGTGGCGATGGCGGTGGCAACGACTACTTTGCCAGCAGTGGATACTCTGGTGGGGATCAATTTAGCAGCAACGAAACAAACACCGCAAATGCTGCATCAGGAGATCAAGACCCAGGCGAACAACTTGATGGAAATTACAGGGATGACGATGACGATGCAAATGACTTCGCCAAAAGAGCC

Protein sequence

MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGGSGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRDDDDDANDFAKRA

Homology

[Close]

BLAST of MS002036 vs. NCBI nr
Match: XP_022134612.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia])

HSP 1 Score: 523.9 bits (1348), Expect = 9.8e-145
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180
           DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG
Sbjct: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180

Query: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240
           SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA
Sbjct: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240

Query: 241 GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD 300
           GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD
Sbjct: 241 GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD 300

Query: 301 DDDDANDFAKRA 313
           DDDDANDFAKRA
Sbjct: 301 DDDDANDFAKRA 312

[Close]

BLAST of MS002036 vs. NCBI nr
Match: XP_038878732.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 332.0 bits (850), Expect = 5.4e-87
Identity = 246/339 (72.57%), Postives = 264/339 (77.88%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFL K GNILRQGANKR+G D QASSLSICQAVRWMSSMQSSKLF+GGISY TDDQSLR
Sbjct: 1   MAFLGKFGNILRQGANKRIGLDLQASSLSICQAVRWMSSMQSSKLFVGGISYNTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF KYGEV+EAR+IVDRETGRSRGFGFVT+TSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFAKYGEVLEARIIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGI-GGGGYGGGGYGGGSGGYGGGGYGGGSG-GYGGGGYGGGGGSGGYGVGGAGGGY 180
           DR+RG  GGGGYGGG YGGG GGYGGGGYGGG G GYGGGGYGGGGG  G G GG GG  
Sbjct: 121 DRTRGFGGGGGYGGGSYGGGGGGYGGGGYGGGGGDGYGGGGYGGGGGYSGGGAGGYGG-- 180

Query: 181 GGSGGGYGDGSGGY---GYNATGNL------------ASDSQGSVGV-GGGFGGNDAGYN 240
           GGSGGGYGDGSGGY   GY++ GN             ASD+ GSVG  GGGFGGNDAGY 
Sbjct: 181 GGSGGGYGDGSGGYSGTGYSSGGNYSRGSGGNYSNDNASDNLGSVGTGGGGFGGNDAGY- 240

Query: 241 NAASNSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFASS---------GYSGGDQF 300
           NAASN   GNT+ SG  AGFG  S         GGG+DYFA+S         GY+GG+QF
Sbjct: 241 NAASNFASGNTHDSGTNAGFGNVS---------GGGSDYFANSGFDASSGVGGYTGGEQF 300

Query: 301 SSNETNTANAASGDQDPGEQLDGNYRDDDDDANDFAKRA 313
            S ETNT + ASGDQ  GEQL+GN R D+DD +DFAKRA
Sbjct: 301 GS-ETNTMD-ASGDQGLGEQLEGNDR-DEDDTDDFAKRA 324

[Close]

BLAST of MS002036 vs. NCBI nr
Match: XP_023530847.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530848.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530849.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 2.1e-86
Identity = 239/344 (69.48%), Postives = 258/344 (75.00%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKR+GSD QASSLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180
           DRSRG+GGGGYGGG      GGYGGGGYGGG    G GGY GGGG+GGYG GGAGG  GG
Sbjct: 121 DRSRGVGGGGYGGG------GGYGGGGYGGG----GAGGY-GGGGAGGYGGGGAGGYGGG 180

Query: 181 SGGGYGDGSGGY---GYNATGN-------------------LASDSQGSVGVGGGFGGND 240
             GGYGDGSGG+   GY++ GN                    ASDS+GSVG GGGFGGND
Sbjct: 181 GSGGYGDGSGGFSTTGYSSGGNYTNNFGGGSQGSGGNYGNEFASDSRGSVGTGGGFGGND 240

Query: 241 AGYNNAASNSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSG 300
           AGYN  ASN  GG+             SGNYNV+   GGG DYF++          G++G
Sbjct: 241 AGYN--ASNFSGGD-------------SGNYNVS---GGGGDYFSNRGSEESSGFGGFTG 300

Query: 301 GDQFSSNETNTANAASGDQDPGEQLDGNYRD-DDDDANDFAKRA 313
           GDQFSS ET+T NA       GEQL+GN RD DDDDANDFAKRA
Sbjct: 301 GDQFSSKETDTMNAPGSGL--GEQLEGNDRDEDDDDANDFAKRA 313

[Close]

BLAST of MS002036 vs. NCBI nr
Match: KAG6587583.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328.6 bits (841), Expect = 6.0e-86
Identity = 239/336 (71.13%), Postives = 257/336 (76.49%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKR+GSD QA SLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGG-GGGSGGYGVGGAGGGYG 180
           DRSRG+GGGGYGGGGYGG  GGYGGGGYGGG GGYGGGG GG GGG+GGYG GG+GG   
Sbjct: 121 DRSRGVGGGGYGGGGYGG--GGYGGGGYGGG-GGYGGGGAGGYGGGAGGYGGGGSGGYGD 180

Query: 181 GSGG--------------GYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAA 240
           GSGG               +G GS G G N     ASDS+GSV  GGGFGGNDAGYN  A
Sbjct: 181 GSGGFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDAGYN--A 240

Query: 241 SNSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSGGDQFSSN 300
           SN  GG+             SGNYNV+   GGG DYF++          GY+GGDQFSS 
Sbjct: 241 SNFSGGD-------------SGNYNVS---GGGGDYFSNRGSEESSGFGGYTGGDQFSSK 300

Query: 301 ETNTANAASGDQDPGEQLDGNYRDDDDDANDFAKRA 313
           ET+T NA       GEQL+GN RD+DDDANDFAKRA
Sbjct: 301 ETDTMNAPGSGL--GEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of MS002036 vs. NCBI nr
Match: XP_022971767.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971776.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971783.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 5.6e-84
Identity = 235/335 (70.15%), Postives = 254/335 (75.82%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANK++GSD QASSLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180
           DRSRG+GGGGYGGGG  GG GGYGGGG G G GGYGGGGY GGGG GGYG GG+GG   G
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGG-GYGGGGYGGGGY-GGGGPGGYGGGGSGGYGDG 180

Query: 181 SGG--------------GYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAAS 240
           SGG               +G GS G G N     ASDS+GSV  GGGFGGNDAGYN  AS
Sbjct: 181 SGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYN--AS 240

Query: 241 NSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSGGDQFSSNE 300
           N  GG+             SGNYNV+   GGG DYF++          GY+GGDQFSS E
Sbjct: 241 NFSGGD-------------SGNYNVS---GGGGDYFSNRGSEESSGFGGYTGGDQFSSKE 300

Query: 301 TNTANAASGDQDPGEQLDGNYRDDDDDANDFAKRA 313
           T++ NA       GEQL+GN RD+DDDANDFAKRA
Sbjct: 301 TDSMNAPGSGL--GEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of MS002036 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.8e-48
Identity = 169/291 (58.08%), Postives = 206/291 (70.79%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSK GNIL+Q  NK++ +    SS S+ QA+R MS   SSKLFIGG++Y  D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGG-GGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYG 180
           DR+    GGG+GGGGYGGG GGYGG GGYGGG+GGYGG G G GGG+GGYG G +GGGYG
Sbjct: 121 DRT---SGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSG-GYGGGAGGYG-GNSGGGYG 180

Query: 181 G-SGGGY-GDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASG 240
           G + GGY G G+GGYG +ATG+            GG GG   GY ++      GNTY  G
Sbjct: 181 GNAAGGYGGSGAGGYGGDATGH------------GGAGG---GYGSSGGFGSSGNTYGEG 240

Query: 241 ATAGFGTGSGNYNVAGGDGGGNDYFASS-GYSGGDQFSSNETNTANAASGD 288
           ++A  G   G+YN + G G  N Y +S+ G++G  QF  +    ++   GD
Sbjct: 241 SSASAG-AVGDYNGSSGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGD 267

[Close]

BLAST of MS002036 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-29
Identity = 154/318 (48.43%), Postives = 187/318 (58.81%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVG +  Q       S    +S S+ Q++R MS   SSK+F+GGISY TD+  LR
Sbjct: 1   MAFLSKVGRLFSQ------TSSHVTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRSRGIGGGGYG--GGGYGGGSGGYG--GGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGG 180
           +R  G GG G+G  GGGYG   GGYG   GGYGGG+GGYGG     G   GG G GG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGG-NS 180

Query: 181 GYGGSGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYAS 240
            YGG+ GGYG G+  Y  NA G       G  G G  FGG   GY   A    G   +A 
Sbjct: 181 SYGGNAGGYG-GNPPYSGNAVG-------GGGGYGSNFGGG-GGY-GVAGGVGGSENFAQ 240

Query: 241 GAT--AGFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQL 300
           G++  AGF     +    G D    D+   SG  G +QF  ++        GD + G   
Sbjct: 241 GSSTNAGFDDKFESNQPLGND---TDHQTESGLGGDEQFGGSDNQ-----FGDAENGNTE 289

Query: 301 DGNYRDDDDDANDFAKRA 313
           +G    D  D  D AKRA
Sbjct: 301 NGPVGFDQTDDGDVAKRA 289

[Close]

BLAST of MS002036 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.0e-27
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAF +K+G +LRQ     + S+      S+  ++R M    S+KLFIGG+S+GTDD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGY--GGGGYGGGSGGYGGGGYGGGG 165
           DR       G GGGGY GG GGY  GGGGYGGG GGYGGGG GGGG
Sbjct: 121 DRPSAPRAYG-GGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGG 157

[Close]

BLAST of MS002036 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.3e-22
Identity = 93/151 (61.59%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 44  KLFIGGISYGTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG+ + TDDQSL+ AF+KYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 LDGQDLHGRRVRVNYAND-RSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGG 163
           ++GQDL GR + VN A   RS G GG G GGGGYGG     GGGGYGGG GGYGGG  GG
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGG 126

Query: 164 GGGSGGYGVGGAGGGYGGSGGGYGDGSGGYG 194
           GGG G     G GGGYGG GGGYG   GG G
Sbjct: 127 GGGYGSR--DGGGGGYGGGGGGYGGSRGGSG 155

[Close]

BLAST of MS002036 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 88/160 (55.00%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 44  KLFIGGISYGTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG+++ TD++SL  AF+++GE++++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRSRGIGGGG-------YGGGGYGGGSGGYG-----GGGYGGG 163
           ++GQDL GR + VN A  R  G GGGG        GGGGYGGG GGYG     GGGY GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRREGGGYSGG 128

Query: 164 SGGY-----GGGGYGGGG--GSGGYGVGGAGGGYGGSGGG 185
            GGY     GGGGYGGGG    GGYG GG GGGYGG GGG
Sbjct: 129 GGGYSSRGGGGGGYGGGGRRDGGGYG-GGEGGGYGGGGGG 167

[Close]

BLAST of MS002036 vs. ExPASy TrEMBL
Match: A0A6J1C030 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111006839 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 4.7e-145
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180
           DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG
Sbjct: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180

Query: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240
           SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA
Sbjct: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240

Query: 241 GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD 300
           GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD
Sbjct: 241 GFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQLDGNYRD 300

Query: 301 DDDDANDFAKRA 313
           DDDDANDFAKRA
Sbjct: 301 DDDDANDFAKRA 312

[Close]

BLAST of MS002036 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.7e-84
Identity = 235/335 (70.15%), Postives = 254/335 (75.82%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANK++GSD QASSLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180
           DRSRG+GGGGYGGGG  GG GGYGGGG G G GGYGGGGY GGGG GGYG GG+GG   G
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGG-GYGGGGYGGGGY-GGGGPGGYGGGGSGGYGDG 180

Query: 181 SGG--------------GYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAAS 240
           SGG               +G GS G G N     ASDS+GSV  GGGFGGNDAGYN  AS
Sbjct: 181 SGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYN--AS 240

Query: 241 NSDGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSGGDQFSSNE 300
           N  GG+             SGNYNV+   GGG DYF++          GY+GGDQFSS E
Sbjct: 241 NFSGGD-------------SGNYNVS---GGGGDYFSNRGSEESSGFGGYTGGDQFSSKE 300

Query: 301 TNTANAASGDQDPGEQLDGNYRDDDDDANDFAKRA 313
           T++ NA       GEQL+GN RD+DDDANDFAKRA
Sbjct: 301 TDSMNAPGSGL--GEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of MS002036 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 2.3e-83
Identity = 242/328 (73.78%), Postives = 258/328 (78.66%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKR G +FQA SLSI QAVRWMSSMQSSK+FIGGISY TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGY--GGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGS---GGYGVGGA- 180
           DRSRG+GGGGY  GGGGYGGG  G GGGGYGGG GGYGGG YGGGGGS   G YG GG+ 
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 GGGYGG-SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNT 240
           GGGYGG SGGG+G G    G N + +  S SQGS G   G GGNDAG +NAASN   GNT
Sbjct: 181 GGGYGGESGGGFGSGFSA-GDNYSSSFGSGSQGS-GGNYGTGGNDAG-SNAASNFASGNT 240

Query: 241 YASGATAGFGTGSGNYNVAGGDGGGNDYFASS---------GYSGGDQFSSNETNTANAA 300
           + SG +AGF T   N        GG DYFA+S         GY+GGDQF SNE NT N A
Sbjct: 241 FGSGTSAGFDTNVSN--------GGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLN-A 300

Query: 301 SGDQDPGEQLDGNYRDDDDDANDFAKRA 313
           SGDQ  GEQL+GN RD+DD+A+DFAKRA
Sbjct: 301 SGDQGLGEQLEGNDRDEDDNADDFAKRA 316

[Close]

BLAST of MS002036 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.8e-81
Identity = 234/329 (71.12%), Postives = 250/329 (75.99%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANKR+GSD QA SLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYG--GGGGSGGYGVGGAGGGY 180
           DRSRG+GGGGYGGGG G G GGYGGGG  GG GGYG GG G  GGGGSGGYG G  G   
Sbjct: 121 DRSRGVGGGGYGGGG-GYGGGGYGGGGGYGGGGGYGDGGAGGYGGGGSGGYGDGSGGFST 180

Query: 181 GG--SGGGY----GDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGN 240
            G  SGG Y    G GS G G N     ASDS+GSV  GGGFGGNDAGYN  ASN  GG+
Sbjct: 181 TGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDAGYN--ASNFSGGD 240

Query: 241 TYASGATAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSGGDQFSSNETNTANA 300
                        SGNYNV+   GGG DYF++          GY+GGDQFSS ET+T NA
Sbjct: 241 -------------SGNYNVS---GGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNA 300

Query: 301 ASGDQDPGEQLDGNYRDDDDDANDFAKRA 313
                  GEQL+GN RD+DDDA+DFAKRA
Sbjct: 301 PGSGL--GEQLEGNDRDEDDDADDFAKRA 308

[Close]

BLAST of MS002036 vs. ExPASy TrEMBL
Match: A0A6J1I6P9 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 8.2e-81
Identity = 227/323 (70.28%), Postives = 246/323 (76.16%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVGNILRQGANK++GSD QASSLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGS-GGYGGGGYGG-GGGSGGYGVGGAGGGY 180
           DRSRG+GGGGYGGG      GGYGGGGYGGG  GGYGGGG GG G GSGG+   G   G 
Sbjct: 121 DRSRGVGGGGYGGG------GGYGGGGYGGGGPGGYGGGGSGGYGDGSGGFSTTGYSSG- 180

Query: 181 GGSGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGA 240
           G     +G GS G G N     ASDS+GSV  GGGFGGNDAGYN  ASN  GG+      
Sbjct: 181 GNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYN--ASNFSGGD------ 240

Query: 241 TAGFGTGSGNYNVAGGDGGGNDYFAS---------SGYSGGDQFSSNETNTANAASGDQD 300
                  SGNYNV+   GGG DYF++          GY+GGDQFSS ET++ NA      
Sbjct: 241 -------SGNYNVS---GGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPGSGL- 296

Query: 301 PGEQLDGNYRDDDDDANDFAKRA 313
            GEQL+GN RD+DDDANDFAKRA
Sbjct: 301 -GEQLEGNDRDEDDDANDFAKRA 296

[Close]

BLAST of MS002036 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-49
Identity = 169/291 (58.08%), Postives = 206/291 (70.79%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSK GNIL+Q  NK++ +    SS S+ QA+R MS   SSKLFIGG++Y  D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGG-GGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYG 180
           DR+    GGG+GGGGYGGG GGYGG GGYGGG+GGYGG G G GGG+GGYG G +GGGYG
Sbjct: 121 DRT---SGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSG-GYGGGAGGYG-GNSGGGYG 180

Query: 181 G-SGGGY-GDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASG 240
           G + GGY G G+GGYG +ATG+            GG GG   GY ++      GNTY  G
Sbjct: 181 GNAAGGYGGSGAGGYGGDATGH------------GGAGG---GYGSSGGFGSSGNTYGEG 240

Query: 241 ATAGFGTGSGNYNVAGGDGGGNDYFASS-GYSGGDQFSSNETNTANAASGD 288
           ++A  G   G+YN + G G  N Y +S+ G++G  QF  +    ++   GD
Sbjct: 241 SSASAG-AVGDYNGSSGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGD 267

[Close]

BLAST of MS002036 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-30
Identity = 154/318 (48.43%), Postives = 187/318 (58.81%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAFLSKVG +  Q       S    +S S+ Q++R MS   SSK+F+GGISY TD+  LR
Sbjct: 1   MAFLSKVGRLFSQ------TSSHVTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRSRGIGGGGYG--GGGYGGGSGGYG--GGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGG 180
           +R  G GG G+G  GGGYG   GGYG   GGYGGG+GGYGG     G   GG G GG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGG-NS 180

Query: 181 GYGGSGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYAS 240
            YGG+ GGYG G+  Y  NA G       G  G G  FGG   GY   A    G   +A 
Sbjct: 181 SYGGNAGGYG-GNPPYSGNAVG-------GGGGYGSNFGGG-GGY-GVAGGVGGSENFAQ 240

Query: 241 GAT--AGFGTGSGNYNVAGGDGGGNDYFASSGYSGGDQFSSNETNTANAASGDQDPGEQL 300
           G++  AGF     +    G D    D+   SG  G +QF  ++        GD + G   
Sbjct: 241 GSSTNAGFDDKFESNQPLGND---TDHQTESGLGGDEQFGGSDNQ-----FGDAENGNTE 289

Query: 301 DGNYRDDDDDANDFAKRA 313
           +G    D  D  D AKRA
Sbjct: 301 NGPVGFDQTDDGDVAKRA 289

[Close]

BLAST of MS002036 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-28
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAF +K+G +LRQ     + S+      S+  ++R M    S+KLFIGG+S+GTDD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGY--GGGGYGGGSGGYGGGGYGGGG 165
           DR       G GGGGY GG GGY  GGGGYGGG GGYGGGG GGGG
Sbjct: 121 DRPSAPRAYG-GGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGG 157

[Close]

BLAST of MS002036 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-25
Identity = 90/164 (54.88%), Postives = 115/164 (70.12%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60
           MAF +K+G +LRQ     + S+      S+  ++R M    S+KLFIGG+S+GTDD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGG 165
           DR        YGGG  GG S G GGGGYGGG GGYGGGG GGGG
Sbjct: 121 DRPS--APRAYGGG--GGYSYGGGGGGYGGGGGGYGGGGDGGGG 152

[Close]

BLAST of MS002036 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-19
Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 44  KLFIGGISYGTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG+++ TDD++L  AF +YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRSRGIGGGGYGGGGYGGGSG-GYGGGGYGGGSGGY-----GG 163
           ++GQDL GR + VN A  R  G GGG  GGG YGGG G   GGGGY GG GGY     GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGG 128

Query: 164 GGYGGG--GGSGGYGVGGAGGGYGGSGGGYG 187
           G YGGG   G GGYG GG GGGYGGSGGG G
Sbjct: 129 GSYGGGRREGGGGYG-GGEGGGYGGSGGGGG 158

The following BLAST results are available for this feature:

BLAST of MS002036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134612.1	9.8e-145	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia]	[more]
XP_038878732.1	5.4e-87	72.57	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]
XP_023530847.1	2.1e-86	69.48	glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
KAG6587583.1	6.0e-86	71.13	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022971767.1	5.6e-84	70.15	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max...	[more]

BLAST of MS002036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	8.8e-48	58.08	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	1.4e-29	48.43	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	5.0e-27	56.02	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	8.3e-22	61.59	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P49311	1.3e-19	55.00	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of MS002036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C030	4.7e-145	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A6J1I7Z2	2.7e-84	70.15	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1E1P2	2.3e-83	73.78	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1EZK6	2.8e-81	71.12	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I6P9	8.2e-81	70.28	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]

BLAST of MS002036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	6.3e-49	58.08	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	1.0e-30	48.43	glycine-rich RNA-binding protein 5	[more]
AT4G13850.1	3.6e-28	56.02	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	1.3e-25	54.88	glycine-rich RNA-binding protein 2	[more]
AT2G21660.2	2.3e-19	57.62	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 126..141 score: 53.91 coord: 155..165 score: 56.82 coord: 48..59 score: 42.71 coord: 179..197 score: 38.16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..287
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..311
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..311
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..117 e-value: 1.2E-29 score: 114.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..115 e-value: 2.5E-22 score: 78.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..121 score: 22.128414
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..158 e-value: 2.7E-35 score: 123.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 34..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002036.1	MS002036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding