MS002005 (gene) Bitter gourd (TR) v1

Overview


Name	MS002005
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold30: 1598836 .. 1600038 (-)
RNA-Seq Expression	MS002005
Synteny	MS002005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGATATGAATTACGCTGTTCTTGCCTTCAACCGAATCGAGAACCCAGATGGGTTTCTTTGGAATACAATGATCAGGGGATTTGGAAGAATTAGTAAGCTGCAAGAGGCCTTCGAGTTTTACAAGAGAATGCTAGAGAAGGGAATAGCGGCAGATAATTTCACATTTTCTTTCTTACTTAAGATTTCTGGGCAAATGGGTTCACTGATCCTGGGAAAGCAGTTACATGTTAATATTCTGAAACTTGGCCTTGAATCCCATGTGTATGTGAGGAACACGCTTATCCACATGTATGGCATGTTGAAAGACATTAAGACTGCACGCAACCTGTTTGTTGAAATGCCCAGACCAGATTTAGTGGCTTGGAACACAGTAATTGACTGCCATGTCTCTTGTGGGATGTACGAGGAAGCACTTGGCTTGTTTTTTCGAATGTTGCAGAGTGGCATAGAGCCTGACGAAGCCACACTAGTAGTCACCGTCTCGGCATGCTCTGCATTGGGCGCCCTAGACTCTGGAAGGTGGGTTCATTCCCATGTGAAGCATAATGACAGAGGAAAGACTATAGCTGTTTTCAATTCATTGATTGACATGTACGCCAAGTGTGGAGCGGTTGAAGACGCTCTCGATATTTTTAACACAATGGGTAGCAAGAATAGGGTAACATGGAACACAATGATCATGGCATTAGCTACACATGGTGATGCAGAGGATGCACTGACACTATTCTCCAAAATGTTAACAGAGAAGCTTGAGAACCCAGATGATGTAACTTTCTTGGGAGTGTTGTGTGCTTGCAACCATGGAGGAGAGGTGGAGGAAGGGAGGAGGTATTTTGATCTTATGACCAAACACTTCAATGTCCAACCGACTCTAAAGCACTATGGATCCATGGTGGATATGTTGGGAAGGGCTGGGTTTGTGGAAGAGGCATATCAGCTGATAAGGAGCATGCCAATGGAGTGTAATGCTGTAATATGGAGAACATTACTCGCTGCTTGTCGGTTGCATGGAAACGTTAAACTCGGCGAGAGAGTAAGGAGCCATGTCCTGGAAATAGAGCCAGATCATAGTAGTGATTATGTCCTTCTTGCAAATATGTATGCGACCTCTGGTCAATGGAATGAAATGATGAAGATCAGAAAATCGATGCAACGAAAAGGTGTGCAGAAGCCAGAGCCTGGCAATAGTTATTTGGAAATC

mRNA sequence

GGCGATATGAATTACGCTGTTCTTGCCTTCAACCGAATCGAGAACCCAGATGGGTTTCTTTGGAATACAATGATCAGGGGATTTGGAAGAATTAGTAAGCTGCAAGAGGCCTTCGAGTTTTACAAGAGAATGCTAGAGAAGGGAATAGCGGCAGATAATTTCACATTTTCTTTCTTACTTAAGATTTCTGGGCAAATGGGTTCACTGATCCTGGGAAAGCAGTTACATGTTAATATTCTGAAACTTGGCCTTGAATCCCATGTGTATGTGAGGAACACGCTTATCCACATGTATGGCATGTTGAAAGACATTAAGACTGCACGCAACCTGTTTGTTGAAATGCCCAGACCAGATTTAGTGGCTTGGAACACAGTAATTGACTGCCATGTCTCTTGTGGGATGTACGAGGAAGCACTTGGCTTGTTTTTTCGAATGTTGCAGAGTGGCATAGAGCCTGACGAAGCCACACTAGTAGTCACCGTCTCGGCATGCTCTGCATTGGGCGCCCTAGACTCTGGAAGGTGGGTTCATTCCCATGTGAAGCATAATGACAGAGGAAAGACTATAGCTGTTTTCAATTCATTGATTGACATGTACGCCAAGTGTGGAGCGGTTGAAGACGCTCTCGATATTTTTAACACAATGGGTAGCAAGAATAGGGTAACATGGAACACAATGATCATGGCATTAGCTACACATGGTGATGCAGAGGATGCACTGACACTATTCTCCAAAATGTTAACAGAGAAGCTTGAGAACCCAGATGATGTAACTTTCTTGGGAGTGTTGTGTGCTTGCAACCATGGAGGAGAGGTGGAGGAAGGGAGGAGGTATTTTGATCTTATGACCAAACACTTCAATGTCCAACCGACTCTAAAGCACTATGGATCCATGGTGGATATGTTGGGAAGGGCTGGGTTTGTGGAAGAGGCATATCAGCTGATAAGGAGCATGCCAATGGAGTGTAATGCTGTAATATGGAGAACATTACTCGCTGCTTGTCGGTTGCATGGAAACGTTAAACTCGGCGAGAGAGTAAGGAGCCATGTCCTGGAAATAGAGCCAGATCATAGTAGTGATTATGTCCTTCTTGCAAATATGTATGCGACCTCTGGTCAATGGAATGAAATGATGAAGATCAGAAAATCGATGCAACGAAAAGGTGTGCAGAAGCCAGAGCCTGGCAATAGTTATTTGGAAATC

Coding sequence (CDS)

GGCGATATGAATTACGCTGTTCTTGCCTTCAACCGAATCGAGAACCCAGATGGGTTTCTTTGGAATACAATGATCAGGGGATTTGGAAGAATTAGTAAGCTGCAAGAGGCCTTCGAGTTTTACAAGAGAATGCTAGAGAAGGGAATAGCGGCAGATAATTTCACATTTTCTTTCTTACTTAAGATTTCTGGGCAAATGGGTTCACTGATCCTGGGAAAGCAGTTACATGTTAATATTCTGAAACTTGGCCTTGAATCCCATGTGTATGTGAGGAACACGCTTATCCACATGTATGGCATGTTGAAAGACATTAAGACTGCACGCAACCTGTTTGTTGAAATGCCCAGACCAGATTTAGTGGCTTGGAACACAGTAATTGACTGCCATGTCTCTTGTGGGATGTACGAGGAAGCACTTGGCTTGTTTTTTCGAATGTTGCAGAGTGGCATAGAGCCTGACGAAGCCACACTAGTAGTCACCGTCTCGGCATGCTCTGCATTGGGCGCCCTAGACTCTGGAAGGTGGGTTCATTCCCATGTGAAGCATAATGACAGAGGAAAGACTATAGCTGTTTTCAATTCATTGATTGACATGTACGCCAAGTGTGGAGCGGTTGAAGACGCTCTCGATATTTTTAACACAATGGGTAGCAAGAATAGGGTAACATGGAACACAATGATCATGGCATTAGCTACACATGGTGATGCAGAGGATGCACTGACACTATTCTCCAAAATGTTAACAGAGAAGCTTGAGAACCCAGATGATGTAACTTTCTTGGGAGTGTTGTGTGCTTGCAACCATGGAGGAGAGGTGGAGGAAGGGAGGAGGTATTTTGATCTTATGACCAAACACTTCAATGTCCAACCGACTCTAAAGCACTATGGATCCATGGTGGATATGTTGGGAAGGGCTGGGTTTGTGGAAGAGGCATATCAGCTGATAAGGAGCATGCCAATGGAGTGTAATGCTGTAATATGGAGAACATTACTCGCTGCTTGTCGGTTGCATGGAAACGTTAAACTCGGCGAGAGAGTAAGGAGCCATGTCCTGGAAATAGAGCCAGATCATAGTAGTGATTATGTCCTTCTTGCAAATATGTATGCGACCTCTGGTCAATGGAATGAAATGATGAAGATCAGAAAATCGATGCAACGAAAAGGTGTGCAGAAGCCAGAGCCTGGCAATAGTTATTTGGAAATC

Protein sequence

GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLLKISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLVAWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHVKHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDMLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDYVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI

Homology

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BLAST of MS002005 vs. NCBI nr
Match: XP_022135209.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momordica charantia])

HSP 1 Score: 820.1 bits (2117), Expect = 8.5e-234
Identity = 397/401 (99.00%), Postives = 400/401 (99.75%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGI+ADNFTFSFLL
Sbjct: 106 GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGISADNFTFSFLL 165

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMP+PDLV
Sbjct: 166 KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPKPDLV 225

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMYEEALGLFFRM QSGIEPDEATLVVTVSACSALGALDSGRWVHSHV
Sbjct: 226 AWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 285

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           KHNDRGKT+AVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL
Sbjct: 286 KHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 345

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD
Sbjct: 346 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 405

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 406 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 465

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI
Sbjct: 466 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 506

[Close]

BLAST of MS002005 vs. NCBI nr
Match: XP_023516362.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 741.9 bits (1914), Expect = 2.9e-210
Identity = 353/401 (88.03%), Postives = 375/401 (93.52%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  FNRIENPDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KISGQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+P LV
Sbjct: 163 KISGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGSLKDVKLARNLFDEMPKPGLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           KHNDRGKTIAVFNSLIDMYAKCGAVE+A ++FN    KN VTWNTMIM LATHGD EDAL
Sbjct: 283 KHNDRGKTIAVFNSLIDMYAKCGAVEEAREMFNATSGKNIVTWNTMIMGLATHGDVEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML EK+  PD VTFLGVLCACNHGG+VEEGRRYFDLMTKH N+QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLAN+YA+SGQWNEMMK+RKSMQRKGVQKPEPGNS+LEI
Sbjct: 463 YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 503

[Close]

BLAST of MS002005 vs. NCBI nr
Match: XP_038880037.1 (pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida])

HSP 1 Score: 740.3 bits (1910), Expect = 8.5e-210
Identity = 353/401 (88.03%), Postives = 375/401 (93.52%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV+ FN IENPDGFLWNTMIRGFGRISKL +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVVVFNGIENPDGFLWNTMIRGFGRISKLLKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KISGQ GS++LGKQLHVNILK+GL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+PDLV
Sbjct: 163 KISGQSGSIMLGKQLHVNILKVGLDSHVYVRNTLIHMYGRLKDVKIARNLFDEMPKPDLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWN VIDCHVSCGMY EALGLF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNAVIDCHVSCGMYSEALGLFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           K ND+GKTIAV NSLIDMYAKCGAVEDA ++FN M  KN VTWNTMIM LATHGDAEDAL
Sbjct: 283 KRNDKGKTIAVLNSLIDMYAKCGAVEDAREMFNAMSDKNVVTWNTMIMGLATHGDAEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML +K+E PD VTFLGVLCACNHGG+VEEGR YF LMTKHFN+QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAKKVETPDGVTFLGVLCACNHGGKVEEGREYFHLMTKHFNIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLANMYA+SGQWNEM+K RKSMQRKGVQKPEPGNSYLEI
Sbjct: 463 YVLLANMYASSGQWNEMIKTRKSMQRKGVQKPEPGNSYLEI 503

[Close]

BLAST of MS002005 vs. NCBI nr
Match: KAG6589516.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 738.0 bits (1904), Expect = 4.2e-209
Identity = 352/401 (87.78%), Postives = 373/401 (93.02%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  FNRIENPDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KI GQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+P LV
Sbjct: 163 KICGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVKLARNLFDEMPKPGLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           K NDRGKTIAVFNSLIDMYAKCGAVEDA ++FN    KN VTWNTMIM LATHGD EDAL
Sbjct: 283 KDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML EK+  PD VTFLGVLCACNHGG+VEEGRRYFDLMTKH N+QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLAN+YA+SGQWNEMMK+RKSMQRKGVQKPEPGNS+LEI
Sbjct: 463 YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 503

[Close]

BLAST of MS002005 vs. NCBI nr
Match: KAG7023204.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 738.0 bits (1904), Expect = 4.2e-209
Identity = 352/401 (87.78%), Postives = 373/401 (93.02%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  FNRIENPDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KI GQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+P LV
Sbjct: 163 KICGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVKLARNLFDEMPKPGLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           K NDRGKTIAVFNSLIDMYAKCGAVEDA ++FN    KN VTWNTMIM LATHGD EDAL
Sbjct: 283 KDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML EK+  PD VTFLGVLCACNHGG+VEEGRRYFDLMTKH N+QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLAN+YA+SGQWNEMMK+RKSMQRKGVQKPEPGNS+LEI
Sbjct: 463 YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 503

[Close]

BLAST of MS002005 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 349.7 bits (896), Expect = 4.2e-95
Identity = 172/401 (42.89%), Postives = 262/401 (65.34%), Query Frame = 0


Query: 3   MNYAVLAFNRIENP-DGFLWNTMIRGFGRISKLQEAFEFYKRMLEKG-IAADNFTFSFLL 62
           M+YA   F++IE P + F+WNT+IRG+  I     AF  Y+ M   G +  D  T+ FL+
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 63  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 122
           K    M  + LG+ +H  +++ G  S +YV+N+L+H+Y    D+ +A  +F +MP  DLV
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 123 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 182
           AWN+VI+     G  EEAL L+  M   GI+PD  T+V  +SAC+ +GAL  G+ VH ++
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 183 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 242
                 + +   N L+D+YA+CG VE+A  +F+ M  KN V+W ++I+ LA +G  ++A+
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 243 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 302
            LF  M + +   P ++TF+G+L AC+H G V+EG  YF  M + + ++P ++H+G MVD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query: 303 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 362
           +L RAG V++AY+ I+SMPM+ N VIWRTLL AC +HG+  L E  R  +L++EP+HS D
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGD 428

Query: 363 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLL+NMYA+  +W+++ KIRK M R GV+K  PG+S +E+
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKK-VPGHSLVEV 468

[Close]

BLAST of MS002005 vs. ExPASy Swiss-Prot
Match: Q0WQW5 (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 338.2 bits (866), Expect = 1.3e-91
Identity = 176/415 (42.41%), Postives = 261/415 (62.89%), Query Frame = 0


Query: 2   DMNYAVLAFNRIENPDGFLWNTMIRGFGR-ISKLQEAFEFYKRMLEKGIAA-DNFTFSFL 61
           D+NYA   F+ IEN   F+WNT+IR     +S+ +EAF  Y++MLE+G ++ D  TF F+
Sbjct: 98  DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157

Query: 62  LKISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDL 121
           LK    +     GKQ+H  I+K G    VYV N LIH+YG    +  AR +F EMP   L
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217

Query: 122 VAWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSH 181
           V+WN++ID  V  G Y+ AL L FR +Q   EPD  T+   +SAC+ LG+L  G W H+ 
Sbjct: 218 VSWNSMIDALVRFGEYDSALQL-FREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAF 277

Query: 182 VKHN---DRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDA 241
           +      D    + V NSLI+MY KCG++  A  +F  M  ++  +WN MI+  ATHG A
Sbjct: 278 LLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRA 337

Query: 242 EDALTLFSKMLTEKLEN--PDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKH 301
           E+A+  F +M+ +K EN  P+ VTF+G+L ACNH G V +GR+YFD+M + + ++P L+H
Sbjct: 338 EEAMNFFDRMV-DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEH 397

Query: 302 YGSMVDMLGRAGFVEEAYQLIRSMPMECNAVIWRTLL-AACRLHGNVKLGERVRSHVLEI 361
           YG +VD++ RAG++ EA  ++ SMPM+ +AVIWR+LL A C+   +V+L E +  +++  
Sbjct: 398 YGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGT 457

Query: 362 EPDHSSD-------YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           + D+ S        YVLL+ +YA++ +WN++  +RK M   G++K EPG S +EI
Sbjct: 458 KEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK-EPGCSSIEI 509

[Close]

BLAST of MS002005 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 337.0 bits (863), Expect = 2.8e-91
Identity = 167/400 (41.75%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 3   MNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLLKI 62
           M+YA   F  +  PD  ++N+M RG+ R +   E F  +  +LE GI  DN+TF  LLK 
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138

Query: 63  SGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLVAW 122
                +L  G+QLH   +KLGL+ +VYV  TLI+MY   +D+ +AR +F  +  P +V +
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 198

Query: 123 NTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHVKH 182
           N +I  +       EAL LF  M    ++P+E TL+  +S+C+ LG+LD G+W+H + K 
Sbjct: 199 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKK 258

Query: 183 NDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDALTL 242
           +   K + V  +LIDM+AKCG+++DA+ IF  M  K+   W+ MI+A A HG AE ++ +
Sbjct: 259 HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318

Query: 243 FSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDML 302
           F +M +E ++ PD++TFLG+L AC+H G VEEGR+YF  M   F + P++KHYGSMVD+L
Sbjct: 319 FERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 378

Query: 303 GRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDYV 362
            RAG +E+AY+ I  +P+    ++WR LLAAC  H N+ L E+V   + E++  H  DYV
Sbjct: 379 SRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYV 438

Query: 363 LLANMYATSGQWNEMMKIRKSMQ-RKGVQKPEPGNSYLEI 402
           +L+N+YA + +W  +  +RK M+ RK V+   PG S +E+
Sbjct: 439 ILSNLYARNKKWEYVDSLRKVMKDRKAVK--VPGCSSIEV 475

[Close]

BLAST of MS002005 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.3e-88
Identity = 163/403 (40.45%), Postives = 253/403 (62.78%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           G +  A   F+ I   D   WN MI G+      +EA E +K M++  +  D  T   ++
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
               Q GS+ LG+Q+H+ I   G  S++ + N LI +Y    +++TA  LF  +P  D++
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           +WNT+I  +    +Y+EAL LF  ML+SG  P++ T++  + AC+ LGA+D GRW+H ++
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 181 KHNDRGKTIA--VFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAED 240
               +G T A  +  SLIDMYAKCG +E A  +FN++  K+  +WN MI   A HG A+ 
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 241 ALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSM 300
           +  LFS+M    ++ PDD+TF+G+L AC+H G ++ GR  F  MT+ + + P L+HYG M
Sbjct: 454 SFDLFSRMRKIGIQ-PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 513

Query: 301 VDMLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHS 360
           +D+LG +G  +EA ++I  M ME + VIW +LL AC++HGNV+LGE    ++++IEP++ 
Sbjct: 514 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 573

Query: 361 SDYVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
             YVLL+N+YA++G+WNE+ K R  +  KG++K  PG S +EI
Sbjct: 574 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK-VPGCSSIEI 614

[Close]

BLAST of MS002005 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 5.6e-87
Identity = 161/400 (40.25%), Postives = 251/400 (62.75%), Query Frame = 0


Query: 3   MNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLLKI 62
           MNYA   F  I++P  F +NTMIRG+  +   +EA  FY  M+++G   DNFT+  LLK 
Sbjct: 82  MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141

Query: 63  SGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLVAW 122
             ++ S+  GKQ+H  + KLGLE+ V+V+N+LI+MYG   +++ +  +F ++      +W
Sbjct: 142 CTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASW 201

Query: 123 NTVIDCHVSCGMYEEALGLFFRML-QSGIEPDEATLVVTVSACSALGALDSGRWVHSHVK 182
           ++++      GM+ E L LF  M  ++ ++ +E+ +V  + AC+  GAL+ G  +H  + 
Sbjct: 202 SSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLL 261

Query: 183 HNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDALT 242
            N     I V  SL+DMY KCG ++ AL IF  M  +N +T++ MI  LA HG+ E AL 
Sbjct: 262 RNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALR 321

Query: 243 LFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDM 302
           +FSKM+ E LE PD V ++ VL AC+H G V+EGRR F  M K   V+PT +HYG +VD+
Sbjct: 322 MFSKMIKEGLE-PDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDL 381

Query: 303 LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDY 362
           LGRAG +EEA + I+S+P+E N VIWRT L+ CR+  N++LG+     +L++   +  DY
Sbjct: 382 LGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDY 441

Query: 363 VLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           +L++N+Y+    W+++ + R  +  KG+ K  PG S +E+
Sbjct: 442 LLISNLYSQGQMWDDVARTRTEIAIKGL-KQTPGFSIVEL 479

[Close]

BLAST of MS002005 vs. ExPASy TrEMBL
Match: A0A6J1C0S9 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007228 PE=4 SV=1)

HSP 1 Score: 820.1 bits (2117), Expect = 4.1e-234
Identity = 397/401 (99.00%), Postives = 400/401 (99.75%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGI+ADNFTFSFLL
Sbjct: 106 GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGISADNFTFSFLL 165

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMP+PDLV
Sbjct: 166 KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPKPDLV 225

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMYEEALGLFFRM QSGIEPDEATLVVTVSACSALGALDSGRWVHSHV
Sbjct: 226 AWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 285

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           KHNDRGKT+AVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL
Sbjct: 286 KHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 345

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD
Sbjct: 346 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 405

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 406 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 465

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI
Sbjct: 466 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 506

[Close]

BLAST of MS002005 vs. ExPASy TrEMBL
Match: A0A6J1JI60 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484809 PE=4 SV=1)

HSP 1 Score: 737.6 bits (1903), Expect = 2.7e-209
Identity = 351/401 (87.53%), Postives = 373/401 (93.02%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  FNRIENPDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KISGQ+GS++L KQLH NILKLGL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+P LV
Sbjct: 163 KISGQLGSIMLAKQLHANILKLGLDSHVYVRNTLIHMYGRLKDVKLARNLFDEMPKPGLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           KHNDRGKTIAVFNSLIDMYAKCGAVEDA ++FN    KN VTWNTMIM LATHGD EDAL
Sbjct: 283 KHNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML EK+  PD VTFLGVLCACNHGG+VEEGRRYFDLMTKH ++QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCDIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLAN+YA+SGQWNEMMK+RKSMQRKGVQKPEPGNS+LEI
Sbjct: 463 YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 503

[Close]

BLAST of MS002005 vs. ExPASy TrEMBL
Match: A0A6J1E6Y6 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429989 PE=4 SV=1)

HSP 1 Score: 734.9 bits (1896), Expect = 1.7e-208
Identity = 351/401 (87.53%), Postives = 372/401 (92.77%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  FNRIENPDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGIAADNFTFSFLL
Sbjct: 103 GDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KI GQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+K ARNLF EMP+P LV
Sbjct: 163 KICGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGGLKDVKLARNLFDEMPKPGLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWNTVIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRWVHSHV
Sbjct: 223 AWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
           K ND GKTIAVFNSLIDMYAKCGAVEDA ++FN    KN VTWNTMIM LATHGD EDAL
Sbjct: 283 KDNDSGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS ML EK+  PD VTFLGVLCACNHGG+VEEGRRYFDLMTKH N+QPT+KHYGSMVD
Sbjct: 343 TLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLAN+YA+SGQWNEMMK+RKSMQRKGVQKPEPGNS+LEI
Sbjct: 463 YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 503

[Close]

BLAST of MS002005 vs. ExPASy TrEMBL
Match: A0A5A7UQ05 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002560 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 7.5e-204
Identity = 343/401 (85.54%), Postives = 369/401 (92.02%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  F+RIENPDGFLWNTMIRGFGRI KL  AFEFYKRMLEKGI ADNFTFSFLL
Sbjct: 103 GDMNYAVDVFDRIENPDGFLWNTMIRGFGRIRKLLMAFEFYKRMLEKGIEADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KI+GQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+  ARNLF E+P+ DLV
Sbjct: 163 KITGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWN VIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRW+HSHV
Sbjct: 223 AWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWIHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
             NDRGKT AVFNSLIDMYAKCGAV+ A ++FN M  KN VTWNTMIM LATHGDAEDAL
Sbjct: 283 NSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTWNTMIMGLATHGDAEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS MLTEK+E PD VTFL VLCACNHGG+VEEGRRYFDLMTKHFN+QPTLKHYGSMVD
Sbjct: 343 TLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLI+SMPMECNAVIWRTLLAAC++HGNVKLGERV SHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVKLGERVSSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLANMYA+SGQWNEM+K RKSMQ+KGV+KPEPGNSYLEI
Sbjct: 463 YVLLANMYASSGQWNEMIKTRKSMQQKGVEKPEPGNSYLEI 503

[Close]

BLAST of MS002005 vs. ExPASy TrEMBL
Match: A0A1S3BWU9 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494002 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 7.5e-204
Identity = 343/401 (85.54%), Postives = 369/401 (92.02%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           GDMNYAV  F+RIENPDGFLWNTMIRGFGRI KL  AFEFYKRMLEKGI ADNFTFSFLL
Sbjct: 103 GDMNYAVDVFDRIENPDGFLWNTMIRGFGRIRKLLMAFEFYKRMLEKGIEADNFTFSFLL 162

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
           KI+GQ+GS++LGKQLHVNILKLGL+SHVYVRNTLIHMYG LKD+  ARNLF E+P+ DLV
Sbjct: 163 KITGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLV 222

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           AWN VIDCHVSCGMY EAL LF +MLQSG+EPDEATLVVTVSACSALGALD GRW+HSHV
Sbjct: 223 AWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWIHSHV 282

Query: 181 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 240
             NDRGKT AVFNSLIDMYAKCGAV+ A ++FN M  KN VTWNTMIM LATHGDAEDAL
Sbjct: 283 NSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTWNTMIMGLATHGDAEDAL 342

Query: 241 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 300
           TLFS MLTEK+E PD VTFL VLCACNHGG+VEEGRRYFDLMTKHFN+QPTLKHYGSMVD
Sbjct: 343 TLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVD 402

Query: 301 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 360
           +LGRAGFVEEAYQLI+SMPMECNAVIWRTLLAAC++HGNVKLGERV SHVLEIEPDHSSD
Sbjct: 403 ILGRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVKLGERVSSHVLEIEPDHSSD 462

Query: 361 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLLANMYA+SGQWNEM+K RKSMQ+KGV+KPEPGNSYLEI
Sbjct: 463 YVLLANMYASSGQWNEMIKTRKSMQQKGVEKPEPGNSYLEI 503

[Close]

BLAST of MS002005 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 349.7 bits (896), Expect = 3.0e-96
Identity = 172/401 (42.89%), Postives = 262/401 (65.34%), Query Frame = 0


Query: 3   MNYAVLAFNRIENP-DGFLWNTMIRGFGRISKLQEAFEFYKRMLEKG-IAADNFTFSFLL 62
           M+YA   F++IE P + F+WNT+IRG+  I     AF  Y+ M   G +  D  T+ FL+
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 63  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 122
           K    M  + LG+ +H  +++ G  S +YV+N+L+H+Y    D+ +A  +F +MP  DLV
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 123 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 182
           AWN+VI+     G  EEAL L+  M   GI+PD  T+V  +SAC+ +GAL  G+ VH ++
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 183 KHNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDAL 242
                 + +   N L+D+YA+CG VE+A  +F+ M  KN V+W ++I+ LA +G  ++A+
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 243 TLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVD 302
            LF  M + +   P ++TF+G+L AC+H G V+EG  YF  M + + ++P ++H+G MVD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query: 303 MLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSD 362
           +L RAG V++AY+ I+SMPM+ N VIWRTLL AC +HG+  L E  R  +L++EP+HS D
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGD 428

Query: 363 YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           YVLL+NMYA+  +W+++ KIRK M R GV+K  PG+S +E+
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKK-VPGHSLVEV 468

[Close]

BLAST of MS002005 vs. TAIR 10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 338.2 bits (866), Expect = 9.1e-93
Identity = 176/415 (42.41%), Postives = 261/415 (62.89%), Query Frame = 0


Query: 2   DMNYAVLAFNRIENPDGFLWNTMIRGFGR-ISKLQEAFEFYKRMLEKGIAA-DNFTFSFL 61
           D+NYA   F+ IEN   F+WNT+IR     +S+ +EAF  Y++MLE+G ++ D  TF F+
Sbjct: 98  DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157

Query: 62  LKISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDL 121
           LK    +     GKQ+H  I+K G    VYV N LIH+YG    +  AR +F EMP   L
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSL 217

Query: 122 VAWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSH 181
           V+WN++ID  V  G Y+ AL L FR +Q   EPD  T+   +SAC+ LG+L  G W H+ 
Sbjct: 218 VSWNSMIDALVRFGEYDSALQL-FREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAF 277

Query: 182 VKHN---DRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDA 241
           +      D    + V NSLI+MY KCG++  A  +F  M  ++  +WN MI+  ATHG A
Sbjct: 278 LLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRA 337

Query: 242 EDALTLFSKMLTEKLEN--PDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKH 301
           E+A+  F +M+ +K EN  P+ VTF+G+L ACNH G V +GR+YFD+M + + ++P L+H
Sbjct: 338 EEAMNFFDRMV-DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEH 397

Query: 302 YGSMVDMLGRAGFVEEAYQLIRSMPMECNAVIWRTLL-AACRLHGNVKLGERVRSHVLEI 361
           YG +VD++ RAG++ EA  ++ SMPM+ +AVIWR+LL A C+   +V+L E +  +++  
Sbjct: 398 YGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGT 457

Query: 362 EPDHSSD-------YVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           + D+ S        YVLL+ +YA++ +WN++  +RK M   G++K EPG S +EI
Sbjct: 458 KEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK-EPGCSSIEI 509

[Close]

BLAST of MS002005 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 337.0 bits (863), Expect = 2.0e-92
Identity = 167/400 (41.75%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 3   MNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLLKI 62
           M+YA   F  +  PD  ++N+M RG+ R +   E F  +  +LE GI  DN+TF  LLK 
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138

Query: 63  SGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLVAW 122
                +L  G+QLH   +KLGL+ +VYV  TLI+MY   +D+ +AR +F  +  P +V +
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 198

Query: 123 NTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHVKH 182
           N +I  +       EAL LF  M    ++P+E TL+  +S+C+ LG+LD G+W+H + K 
Sbjct: 199 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKK 258

Query: 183 NDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDALTL 242
           +   K + V  +LIDM+AKCG+++DA+ IF  M  K+   W+ MI+A A HG AE ++ +
Sbjct: 259 HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318

Query: 243 FSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDML 302
           F +M +E ++ PD++TFLG+L AC+H G VEEGR+YF  M   F + P++KHYGSMVD+L
Sbjct: 319 FERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 378

Query: 303 GRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDYV 362
            RAG +E+AY+ I  +P+    ++WR LLAAC  H N+ L E+V   + E++  H  DYV
Sbjct: 379 SRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYV 438

Query: 363 LLANMYATSGQWNEMMKIRKSMQ-RKGVQKPEPGNSYLEI 402
           +L+N+YA + +W  +  +RK M+ RK V+   PG S +E+
Sbjct: 439 ILSNLYARNKKWEYVDSLRKVMKDRKAVK--VPGCSSIEV 475

[Close]

BLAST of MS002005 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 327.4 bits (838), Expect = 1.6e-89
Identity = 163/403 (40.45%), Postives = 253/403 (62.78%), Query Frame = 0


Query: 1   GDMNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLL 60
           G +  A   F+ I   D   WN MI G+      +EA E +K M++  +  D  T   ++
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 61  KISGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLV 120
               Q GS+ LG+Q+H+ I   G  S++ + N LI +Y    +++TA  LF  +P  D++
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 121 AWNTVIDCHVSCGMYEEALGLFFRMLQSGIEPDEATLVVTVSACSALGALDSGRWVHSHV 180
           +WNT+I  +    +Y+EAL LF  ML+SG  P++ T++  + AC+ LGA+D GRW+H ++
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 181 KHNDRGKTIA--VFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAED 240
               +G T A  +  SLIDMYAKCG +E A  +FN++  K+  +WN MI   A HG A+ 
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 241 ALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSM 300
           +  LFS+M    ++ PDD+TF+G+L AC+H G ++ GR  F  MT+ + + P L+HYG M
Sbjct: 454 SFDLFSRMRKIGIQ-PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 513

Query: 301 VDMLGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHS 360
           +D+LG +G  +EA ++I  M ME + VIW +LL AC++HGNV+LGE    ++++IEP++ 
Sbjct: 514 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 573

Query: 361 SDYVLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
             YVLL+N+YA++G+WNE+ K R  +  KG++K  PG S +EI
Sbjct: 574 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK-VPGCSSIEI 614

[Close]

BLAST of MS002005 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 322.8 bits (826), Expect = 4.0e-88
Identity = 161/400 (40.25%), Postives = 251/400 (62.75%), Query Frame = 0


Query: 3   MNYAVLAFNRIENPDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGIAADNFTFSFLLKI 62
           MNYA   F  I++P  F +NTMIRG+  +   +EA  FY  M+++G   DNFT+  LLK 
Sbjct: 82  MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141

Query: 63  SGQMGSLILGKQLHVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPRPDLVAW 122
             ++ S+  GKQ+H  + KLGLE+ V+V+N+LI+MYG   +++ +  +F ++      +W
Sbjct: 142 CTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASW 201

Query: 123 NTVIDCHVSCGMYEEALGLFFRML-QSGIEPDEATLVVTVSACSALGALDSGRWVHSHVK 182
           ++++      GM+ E L LF  M  ++ ++ +E+ +V  + AC+  GAL+ G  +H  + 
Sbjct: 202 SSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLL 261

Query: 183 HNDRGKTIAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTWNTMIMALATHGDAEDALT 242
            N     I V  SL+DMY KCG ++ AL IF  M  +N +T++ MI  LA HG+ E AL 
Sbjct: 262 RNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALR 321

Query: 243 LFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDM 302
           +FSKM+ E LE PD V ++ VL AC+H G V+EGRR F  M K   V+PT +HYG +VD+
Sbjct: 322 MFSKMIKEGLE-PDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDL 381

Query: 303 LGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDY 362
           LGRAG +EEA + I+S+P+E N VIWRT L+ CR+  N++LG+     +L++   +  DY
Sbjct: 382 LGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDY 441

Query: 363 VLLANMYATSGQWNEMMKIRKSMQRKGVQKPEPGNSYLEI 402
           +L++N+Y+    W+++ + R  +  KG+ K  PG S +E+
Sbjct: 442 LLISNLYSQGQMWDDVARTRTEIAIKGL-KQTPGFSIVEL 479

The following BLAST results are available for this feature:

BLAST of MS002005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135209.1	8.5e-234	99.00	pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momor...	[more]
XP_023516362.1	2.9e-210	88.03	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp...	[more]
XP_038880037.1	8.5e-210	88.03	pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida]	[more]
KAG6589516.1	4.2e-209	87.78	Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partia...	[more]
KAG7023204.1	4.2e-209	87.78	Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partia...	[more]

BLAST of MS002005 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MQA3	4.2e-95	42.89	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q0WQW5	1.3e-91	42.41	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
Q8LK93	2.8e-91	41.75	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]
Q9LN01	2.3e-88	40.45	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9C6T2	5.6e-87	40.25	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]

BLAST of MS002005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0S9	4.1e-234	99.00	pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Mom...	[more]
A0A6J1JI60	2.7e-209	87.53	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1E6Y6	1.7e-208	87.53	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A5A7UQ05	7.5e-204	85.54	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BWU9	7.5e-204	85.54	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

BLAST of MS002005 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21065.1	3.0e-96	42.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G59720.1	9.1e-93	42.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02980.1	2.0e-92	41.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	1.6e-89	40.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	4.0e-88	40.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 81..174 e-value: 2.3E-21 score: 78.0 coord: 1..80 e-value: 5.8E-13 score: 50.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 178..251 e-value: 1.3E-10 score: 43.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 252..359 e-value: 5.8E-21 score: 77.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 187..361
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 191..217 e-value: 4.6E-4 score: 18.2 coord: 221..255 e-value: 1.4E-6 score: 26.1 coord: 120..154 e-value: 1.1E-9 score: 35.8 coord: 20..52 e-value: 6.5E-8 score: 30.3 coord: 295..320 e-value: 0.003 score: 15.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 361..389 e-value: 0.089 score: 13.1 coord: 295..319 e-value: 0.0023 score: 18.1 coord: 92..115 e-value: 0.088 score: 13.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 218..266 e-value: 6.5E-9 score: 35.9 coord: 117..164 e-value: 3.5E-10 score: 39.9 coord: 16..61 e-value: 1.1E-10 score: 41.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 17..51 score: 11.91499
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 188..218 score: 9.339086
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 10.522905
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 118..152 score: 12.58363
None	No IPR available	PANTHER	PTHR47926:SF177	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 10..401
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 10..401

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002005.1	MS002005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding