MS002004 (gene) Bitter gourd (TR) v1

Overview


Name	MS002004
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	scaffold30: 1593893 .. 1594889 (-)
RNA-Seq Expression	MS002004
Synteny	MS002004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCACACCTCAATACTTCTAATCTCCACCAACACAAATCAACCATCATCCCATATTCCAAACTGGTAACAGTATCATCTTTCTCCCTTTCGCCTCTAAATTCAATGTGCTCCATATGACCCATTATTTTACAATTCTTGCAGCTTTTCAACTCTGGGGTTTTCAGTCATCCACAACTGGTAATTGATTATATTTTGTTTCTGGATCAATTCAATATGCAGAAGTTCATATGTTTTTATACATAAACAGCATGAAAGTACTACTACAAAAAAGCGCGAGAGGGGCTCTCTGGGGAAAGTAAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTTGATCACATGGATGGCCAAAGGGACCTCATAACCCACAAATCAATAGTGCATCTCAGCGATGAAGCTATAAAGAATGTCTGTAAGTGTTTGATAAAACCCAACTTCTCTGTAAATCCATGAAGAAAGTTAGAGAGAATTGTGCTATTGGGAACTAACCTTCATTACTTTTAACCATTGTAAAAATGTCAGATAGTCTTTACATTATGTTCACCTGTTGGGGATGCCTGTTCTTTGGCTCCATGAAGGTATCAATATCATATCTTCAGTTTCAATCTGTAGTTAAAAAGCACTGTTTCAGATATTCGAGATAAAGATTAAAGAAAGGGATTATGTTTTTAGGATCCATATTATGACTCAGAGGTGTACAGAAAAGATGGAGGAGATGGAACAGGGCATTGGGTCTACGAAACGGTGAACTTATTTTCTGGGACTTAAGAAATGGCACCATTGTCACCTGTTTAGTTTCACTCTATCGTTTAACAAAGTTTGTATCTTTAATGTGTGGCGTTGCAGCAAGAGGACATTGAGGAAGCAGCAAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGGCTTAGAGAGCTGGAAGAGGCTGGCAAGAAA

mRNA sequence

ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCACACCTCAATACTTCTAATCTCCACCAACACAAATCAACCATCATCCCATATTCCAAACTGGTAACAGTATCATCTTTCTCCCTTTCGCCTCTAAATTCAATTACTACTACAAAAAAGCGCGAGAGGGGCTCTCTGGGGAAAGTAAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTTGATCACATGGATGGCCAAAGGGACCTCATAACCCACAAATCAATAGTGCATCTCAGCGATGAAGCTATAAAGAATGTCTATAGTCTTTACATTATGTTCACCTGTTGGGGATGCCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGAAAAGATGGAGGAGATGGAACAGGGCATTGGGTCTACGAAACGCAAGAGGACATTGAGGAAGCAGCAAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGGCTTAGAGAGCTGGAAGAGGCTGGCAAGAAA

Coding sequence (CDS)

ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCACACCTCAATACTTCTAATCTCCACCAACACAAATCAACCATCATCCCATATTCCAAACTGGTAACAGTATCATCTTTCTCCCTTTCGCCTCTAAATTCAATTACTACTACAAAAAAGCGCGAGAGGGGCTCTCTGGGGAAAGTAAATGCTTTCCCAGATTGGCAATTGATGGCGGTTCTAGTTGATCACATGGATGGCCAAAGGGACCTCATAACCCACAAATCAATAGTGCATCTCAGCGATGAAGCTATAAAGAATGTCTATAGTCTTTACATTATGTTCACCTGTTGGGGATGCCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGAAAAGATGGAGGAGATGGAACAGGGCATTGGGTCTACGAAACGCAAGAGGACATTGAGGAAGCAGCAAGAGCAGAGCTATGGCGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGGCTTAGAGAGCTGGAAGAGGCTGGCAAGAAA

Protein sequence

MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

Homology

[Close]

BLAST of MS002004 vs. NCBI nr
Match: XP_022134651.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Momordica charantia])

HSP 1 Score: 337.8 bits (865), Expect = 5.7e-89
Identity = 170/181 (93.92%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKL+  S  FS   L+  TTTKKRERGSLG
Sbjct: 12  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLLFNSGVFSHPQLHESTTTKKRERGSLG 71

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 72  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 131

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK
Sbjct: 132 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 191

[Close]

BLAST of MS002004 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.7e-78
Identity = 151/181 (83.43%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIKP L++SNLHQHKST+IP SKL++ S +F+      +T   K  RGSLG
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVT---KPRRGSLG 60

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           K+NAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 61  KLNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQ+VGGL+ELEEAGK
Sbjct: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGK 178

[Close]

BLAST of MS002004 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 8.6e-77
Identity = 146/180 (81.11%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MAKAIAGFS+I P L++SNLH HKST+IP+ KL   S+  +     +    KR+RGS+GK
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKL--PSNSGIFGHQQLIEDTKRQRGSMGK 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           V+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           PYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of MS002004 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 4.3e-76
Identity = 145/180 (80.56%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MAKAIAGFS+I P L++SNLH HK+T+IP  KL   S+  +     +    KR+RGS+GK
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKL--PSNSGIFGHQQLIEDTKRQRGSMGK 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           V+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           PYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of MS002004 vs. NCBI nr
Match: XP_022933404.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata] >XP_023531595.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >KAG6587547.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021522.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 5.6e-76
Identity = 150/181 (82.87%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIK  L ++SNLH HKST IP+S L+  S   +     +T   KR+RGSLG
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNS--GVFSHRQLTEGSKRQRGSLG 60

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           +VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 61  RVNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK
Sbjct: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 179

[Close]

BLAST of MS002004 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.0e-49
Identity = 107/181 (59.12%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MA+A   F+    H+ +S  H  K    P         + LS   +    +   RGSL  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPN------HGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]

BLAST of MS002004 vs. ExPASy TrEMBL
Match: A0A6J1BYE8 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006874 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 170/181 (93.92%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSS-FSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKL+  S  FS   L+  TTTKKRERGSLG
Sbjct: 12  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLLFNSGVFSHPQLHESTTTKKRERGSLG 71

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 72  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 131

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK
Sbjct: 132 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 191

[Close]

BLAST of MS002004 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 145/180 (80.56%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MAKAIAGFS+I P L++SNLH HK+T+IP  KL   S+  +     +    KR+RGS+GK
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKL--PSNSGIFGHQQLIEDTKRQRGSMGK 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           V+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           PYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of MS002004 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 150/181 (82.87%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIK  L ++SNLH HKST IP+S L+  S   +     +T   KR+RGSLG
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNS--GVFSHRQLTEGSKRQRGSLG 60

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           +VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 61  RVNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK
Sbjct: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 179

[Close]

BLAST of MS002004 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.6e-76
Identity = 151/181 (83.43%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVS-SFSLSPLNSITTTKKRERGSLG 60
           MAKAIAGFSIIKP L++SNLH  KS +IP+SKL++ S  FS   L  +    K +RGSL 
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVA---KPKRGSLS 60

Query: 61  KVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
           KVNAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK
Sbjct: 61  KVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARA+LWREELIEEIEQKVGGLRELEEAGK
Sbjct: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGK 177

[Close]

BLAST of MS002004 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.6e-76
Identity = 144/180 (80.00%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MAKAIAGFS++ P L++SNLH HKST+IP  KL   S+  +     +    KR+RGS+GK
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKL--PSNSGIFGHQQLIEDTKRQRGSMGK 60

Query: 61  VNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           V+AFPDWQLMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           PYYDSEVYRKDGGDGTGHWVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of MS002004 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-50
Identity = 111/185 (60.00%), Postives = 127/185 (68.65%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RG 60
           MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RG
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPN------HGYWLSNVN-----EKRERNLMRG 60

Query: 61  SLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFF 120
           SL    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+F
Sbjct: 61  SLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYF 120

Query: 121 GSMKDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELE 180
           GS KDP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELE
Sbjct: 121 GSAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELE 174

[Close]

BLAST of MS002004 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-50
Identity = 107/181 (59.12%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRERGSLGK 60
           MA+A   F+    H+ +S  H  K    P         + LS   +    +   RGSL  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPN------HGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGK 180
           DP+YDSE YR DGGDGTG+WVYETQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]

BLAST of MS002004 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-33
Identity = 77/148 (52.03%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RG 60
           MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RG
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPN------HGYWLSNVN-----EKRERNLMRG 60

Query: 61  SLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFF 120
           SL    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+F
Sbjct: 61  SLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYF 120

Query: 121 GSMKDPYYDSEVYRKDGGDGTGHWVYET 144
           GS KDP+YDSE YR DGGDGTG+WVYET
Sbjct: 121 GSAKDPFYDSEEYRGDGGDGTGYWVYET 137

[Close]

BLAST of MS002004 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-33
Identity = 77/148 (52.03%), Postives = 93/148 (62.84%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLVTVSSFSLSPLNSITTTKKRE----RG 60
           MA+A   F+    H+ +S  H  K    P         + LS +N     +KRE    RG
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPN------HGYWLSNVN-----EKRERNLMRG 60

Query: 61  SLGKVNAFP-DWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFF 120
           SL    A P D  LMAV+V  ++G RD+IT K + HLSD+AIKNVY  YIMFTCWGCL+F
Sbjct: 61  SLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYF 120

Query: 121 GSMKDPYYDSEVYRKDGGDGTGHWVYET 144
           GS KDP+YDSE YR DGGDGTG+WVYET
Sbjct: 121 GSAKDPFYDSEEYRGDGGDGTGYWVYET 137

The following BLAST results are available for this feature:

BLAST of MS002004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134651.1	5.7e-89	93.92	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Momordica charantia...	[more]
XP_038880039.1	7.7e-78	83.43	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]	[more]
XP_023516363.1	8.6e-77	81.11	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_022987205.1	4.3e-76	80.56	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]
XP_022933404.1	5.6e-76	82.87	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]...	[more]

BLAST of MS002004 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	6.0e-49	59.12	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of MS002004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYE8	2.8e-89	93.92	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charant...	[more]
A0A6J1JG67	2.1e-76	80.56	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1EZP2	2.7e-76	82.87	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat...	[more]
A0A5A7UWT7	4.6e-76	83.43	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1E2I6	4.6e-76	80.00	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo...	[more]

BLAST of MS002004 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.3	1.1e-50	60.00	NDH dependent flow 6	[more]
AT1G18730.1	4.3e-50	59.12	NDH dependent flow 6	[more]
AT1G18730.2	3.6e-33	52.03	NDH dependent flow 6	[more]
AT1G18730.4	3.6e-33	52.03	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..177
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002004.1	MS002004.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)