MS002000 (gene) Bitter gourd (TR) v1

Overview


Name	MS002000
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HNH domain-containing protein
Location	scaffold30: 1578732 .. 1578975 (-)
RNA-Seq Expression	MS002000
Synteny	MS002000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACCGTTAATCGATCAAAGGGAAACCGTACTGAAATTTCAAGGGCAGAACTAATACAAAAAAGCTCTTACTGCCGGGTTTCAGGTATGTACACTGGCCTTGTTAGACTACAATACTTTATGGTAGTAATATTATTCAGTCAATTGGTTTGAATAATTTGCAGGTCGAGACATGGATCTTCTTGAATTATCTGCCTATGGAAATGTACATCGTGGACAAGACTCTGGAGGGTGTAGAATTCAG

mRNA sequence

GCAACCGTTAATCGATCAAAGGGAAACCGTACTGAAATTTCAAGGGCAGAACTAATACAAAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGATCTTCTTGAATTATCTGCCTATGGAAATGTACATCGTGGACAAGACTCTGGAGGGTGTAGAATTCAG

Coding sequence (CDS)

GCAACCGTTAATCGATCAAAGGGAAACCGTACTGAAATTTCAAGGGCAGAACTAATACAAAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGATCTTCTTGAATTATCTGCCTATGGAAATGTACATCGTGGACAAGACTCTGGAGGGTGTAGAATTCAG

Protein sequence

ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ

Homology

[Close]

BLAST of MS002000 vs. NCBI nr
Match: XP_008453210.1 (PREDICTED: uncharacterized protein LOC103493997 [Cucumis melo] >KAA0057948.1 HNH endonuclease [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 9.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. NCBI nr
Match: XP_038880609.1 (uncharacterized protein LOC120072255 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 9.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. NCBI nr
Match: XP_004138170.1 (uncharacterized protein LOC101222461 [Cucumis sativus] >KGN63676.1 hypothetical protein Csa_013308 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 9.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. NCBI nr
Match: KAG6587544.1 (hypothetical protein SDJN03_16109, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021519.1 hypothetical protein SDJN02_15244 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. NCBI nr
Match: XP_023529236.1 (uncharacterized protein LOC111792136 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. ExPASy TrEMBL
Match: A0A5A7US43 (HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002510 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. ExPASy TrEMBL
Match: A0A0A0LUI5 (HNH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009800 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. ExPASy TrEMBL
Match: A0A1S3BWU4 (uncharacterized protein LOC103493997 OS=Cucumis melo OX=3656 GN=LOC103493997 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. ExPASy TrEMBL
Match: A0A6J1I688 (uncharacterized protein LOC111471489 OS=Cucurbita maxima OX=3661 GN=LOC111471489 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ
Sbjct: 146 ATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of MS002000 vs. ExPASy TrEMBL
Match: A0A6J1C2S9 (uncharacterized protein LOC111007422 OS=Momordica charantia OX=3673 GN=LOC111007422 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           ATVNR+KGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGC+IQ
Sbjct: 146 ATVNRTKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCKIQ 200

[Close]

BLAST of MS002000 vs. TAIR 10
Match: AT3G47490.1 (HNH endonuclease )

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-19
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           A VNRSKGN+T+ISR+ELIQ+SSYCRV+GRDMDL+EL+AYGNV R   S GCRIQ
Sbjct: 180 AKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ 234

[Close]

BLAST of MS002000 vs. TAIR 10
Match: AT3G47490.3 (HNH endonuclease )

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-19
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   ATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 56
           A VNRSKGN+T+ISR+ELIQ+SSYCRV+GRDMDL+EL+AYGNV R   S GCRIQ
Sbjct: 161 AKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ 215

The following BLAST results are available for this feature:

BLAST of MS002000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453210.1	9.1e-22	100.00	PREDICTED: uncharacterized protein LOC103493997 [Cucumis melo] >KAA0057948.1 HNH...	[more]
XP_038880609.1	9.1e-22	100.00	uncharacterized protein LOC120072255 [Benincasa hispida]	[more]
XP_004138170.1	9.1e-22	100.00	uncharacterized protein LOC101222461 [Cucumis sativus] >KGN63676.1 hypothetical ...	[more]
KAG6587544.1	1.6e-21	98.18	hypothetical protein SDJN03_16109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023529236.1	1.6e-21	98.18	uncharacterized protein LOC111792136 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS002000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7US43	4.4e-22	100.00	HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002...	[more]
A0A0A0LUI5	4.4e-22	100.00	HNH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009800 PE=4 SV...	[more]
A0A1S3BWU4	4.4e-22	100.00	uncharacterized protein LOC103493997 OS=Cucumis melo OX=3656 GN=LOC103493997 PE=...	[more]
A0A6J1I688	7.5e-22	98.18	uncharacterized protein LOC111471489 OS=Cucurbita maxima OX=3661 GN=LOC111471489...	[more]
A0A6J1C2S9	2.2e-21	96.36	uncharacterized protein LOC111007422 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of MS002000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47490.1	5.9e-19	76.36	HNH endonuclease	[more]
AT3G47490.3	5.9e-19	76.36	HNH endonuclease	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33427:SF3	HNH ENDONUCLEASE	coord: 1..55
None	No IPR available	PANTHER	PTHR33427	HNH ENDONUCLEASE	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002000.1	MS002000.1	mRNA