MS001992 (gene) Bitter gourd (TR) v1

Overview


Name	MS001992
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L34
Location	scaffold30: 1524490 .. 1526556 (+)
RNA-Seq Expression	MS001992
Synteny	MS001992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGCGACTAACTTATCGCAAGCGCCATAGCTATGCCACCAAGTCTAACCAGCACCGCGTCGTCAAAACGCCTGGTAACTCTCTCGTTCCGCTCGATTCTGTGTCTGTTTATTGCTGGAATTACATAACTGCTTGATTTTGATCCGTCCCGTCATACATTCCTTCTACATTTGATATTGGCGATGACCTTTTCTTGGAGCTTCAATGTCAAATGATATCTTTTCGTTGGTTTTCTTCTGTTCTGTATTTATTCTTCCTTTCATCTTCTTCCCTTCTGTTTAAAGGCGGGAAGCTTGTGTACCAGACTACCAAGAAGAGGGCAAGTGGACCAAAATGTCCGGTCACCGGCAAAAGAATTCAAGGGGTATGTCTTTGATCTCAGTTCCCTGCTCTTTTTTCTTCTTTACTATTTTTAGTCTTTTCCCCTGTCGAGTTTGGATATTTTGAGTTGTTGATGCTTGTTGTAGCTCTGTTAGCCTCGCACTCCAACTGCTGATTTATGATGGTTATATTATCTTTATCACGTACGTGTTTGCCGTTAGTGTATGGATCAATGCTAATTGCTAAATGTAGCACTTGTAGTAAATTACCTCTTTTTCTTTCTTTCGTGTGCTCTTTCGAGCTTACCTTGGAGACGAGGGAAGGGAAAAAATAAATGTTGCAGATAACTTCCTTTAGTTGGGTGCTCCTTTTTGGTCCATCATCAGTATTCAAATTTGTACATGTTTGGAACTTTTGGTTCATTGTGATTGTTACTCTAGCAGTTACTGGATATTATAGAGAGCCCAGTACTTTTTTTTTCCTCTCTTCCTTCGGAATAACTACGTTGACATTGACTGATTTCTGATCTCCTCATTTGGAAAAGTCACACTCCGGCTAATTCCTGCTGACATTATTAGAATGCAAGTTAAATTTAATGTTGACATTTTTTGATGGACTGATCAATTGGATTCTGTTGTTTCCCAGTCTCCCAAGTAATCGTTACGTTGTTATCTAACATAATCAACTACTGACCAAAAACTATCTATAATTCATATATACATTTCCATAGTTTCTAGTCTGATAGTATTACTTCATCTTTAAATGGTGTGAAAACTCATTTAAGCTACAAAATTAAGTCAGTTTTCTGGCCGATATTAGAATCTTGAATGCATATGCAGTTATAGGAGCCCTCGGTTATGGACTTGTTTAGTCACGAGAGATGGCAAAGACAACTGCATCCTTGTGATCCTGCACGCTGCAAAACATATTATTTTGCTTTAAATGTTAAGACAGTAACATCAAATACCATTCTGTTCAGCTTGCATGCTATAATCAGTTTTAAAGCTCTAGATTCTTGTTTTCTGGTTGTTTGTCTCCTTAGCAAAATTTTTATGTATGGCTTTCTATGAATGTCTTTGTGAAAAGAATGATTTCATTTCCTTAGCAGTTTCCACACATGAGCATGTTTGTCTTTAACTTCACTACTTGCATTCTTTTTACACAGATAGATTCCTGCGTATTCATTTGTGCATCATTACATACATTCTTTGTACACTAGTAGACACATCGCATCATATCGTTGATGCATTTATGTATTCATATGTATCCATGTATGTTTGTCTACCTACGTTTTGGTGTAATTCTTCAAGGCCATTGACCTTCTTTTGAATTCCATGATAGTCTTTTGAATTCAAGTGTTTATTAAGAGGGCTGGTGATAAACCATGAATCTATATGACCATGTTGCTTAAGTTAAACCATGTAAATTTGTTACCTCTACAGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTACCCAGGAACCGAAGGACTGTAAATCGTGCATATGGTGGCGTATTATCTGGAGGTGCTGTTAGAGAGAGGTTAGCTTCCCATTATCTTTTCTCATTACTCAATATTCATCTGTTCGTTGTGTATTCATCACAAGGTATTTCCTTAATCCTTCCTTCATGGGGTACAGAATCATTCGGGCCTTTCTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAGAAGTTGGCATCAAAAAGC

mRNA sequence

ATGGTTCAGCGACTAACTTATCGCAAGCGCCATAGCTATGCCACCAAGTCTAACCAGCACCGCGTCGTCAAAACGCCTGGCGGGAAGCTTGTGTACCAGACTACCAAGAAGAGGGCAAGTGGACCAAAATGTCCGGTCACCGGCAAAAGAATTCAAGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTACCCAGGAACCGAAGGACTGTAAATCGTGCATATGGTGGCGTATTATCTGGAGGTGCTGTTAGAGAGAGAATCATTCGGGCCTTTCTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAGAAGTTGGCATCAAAAAGC

Coding sequence (CDS)

ATGGTTCAGCGACTAACTTATCGCAAGCGCCATAGCTATGCCACCAAGTCTAACCAGCACCGCGTCGTCAAAACGCCTGGCGGGAAGCTTGTGTACCAGACTACCAAGAAGAGGGCAAGTGGACCAAAATGTCCGGTCACCGGCAAAAGAATTCAAGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTACCCAGGAACCGAAGGACTGTAAATCGTGCATATGGTGGCGTATTATCTGGAGGTGCTGTTAGAGAGAGAATCATTCGGGCCTTTCTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAGAAGTTGGCATCAAAAAGC

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS

Homology

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BLAST of MS001992 vs. NCBI nr
Match: XP_022135432.1 (60S ribosomal protein L34-like [Momordica charantia])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS001992 vs. NCBI nr
Match: XP_023910535.1 (60S ribosomal protein L34 [Quercus suber] >XP_030954236.1 60S ribosomal protein L34 [Quercus lobata] >XP_030954242.1 60S ribosomal protein L34 [Quercus lobata])

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK+ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKIASKS 120

[Close]

BLAST of MS001992 vs. NCBI nr
Match: NP_001236831.1 (60S ribosomal protein L34-like [Glycine max] >XP_003552522.1 60S ribosomal protein L34 [Glycine max] >XP_028179725.1 60S ribosomal protein L34-like [Glycine soja] >XP_028212131.1 60S ribosomal protein L34-like [Glycine soja] >ACU13658.1 unknown [Glycine max] >KAG4922659.1 hypothetical protein JHK86_051472 [Glycine max] >KAG4925811.1 hypothetical protein JHK87_051351 [Glycine soja] >KAG4937418.1 hypothetical protein JHK85_052337 [Glycine max] >KAG5092857.1 hypothetical protein JHK82_051635 [Glycine max])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

[Close]

BLAST of MS001992 vs. NCBI nr
Match: KAG5008089.1 (hypothetical protein JHK85_026631 [Glycine max])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 720 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 779

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 780 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 839

[Close]

BLAST of MS001992 vs. NCBI nr
Match: KAG5013888.1 (hypothetical protein JHK86_026149 [Glycine max])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 731 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 790

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 791 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 850

[Close]

BLAST of MS001992 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-56
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of MS001992 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-56
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of MS001992 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of MS001992 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.4e-54
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of MS001992 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.6e-53
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of MS001992 vs. ExPASy TrEMBL
Match: A0A6J1C2P0 (60S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111007389 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.1e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS001992 vs. ExPASy TrEMBL
Match: A0A7N2L0Z3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK+ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKIASKS 120

[Close]

BLAST of MS001992 vs. ExPASy TrEMBL
Match: A0A445J5A9 (60S ribosomal protein L34 OS=Glycine soja OX=3848 GN=D0Y65_025099 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

[Close]

BLAST of MS001992 vs. ExPASy TrEMBL
Match: C6SWN5 (Uncharacterized protein OS=Glycine max OX=3847 GN=100785061 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

[Close]

BLAST of MS001992 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.0e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of MS001992 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.8 bits (543), Expect = 7.7e-56
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of MS001992 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-55
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of MS001992 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.2e-54
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of MS001992 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-43
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERII 93
          EYKRSRL RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of MS001992 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135432.1	1.5e-56	100.00	60S ribosomal protein L34-like [Momordica charantia]	[more]
XP_023910535.1	2.5e-56	99.17	60S ribosomal protein L34 [Quercus suber] >XP_030954236.1 60S ribosomal protein ...	[more]
NP_001236831.1	7.3e-56	99.17	60S ribosomal protein L34-like [Glycine max] >XP_003552522.1 60S ribosomal prote...	[more]
KAG5008089.1	7.3e-56	99.17	hypothetical protein JHK85_026631 [Glycine max]	[more]
KAG5013888.1	7.3e-56	99.17	hypothetical protein JHK86_026149 [Glycine max]	[more]

BLAST of MS001992 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	2.0e-56	95.00	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
P40590	7.5e-56	94.17	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q42351	1.1e-54	91.67	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
Q9FE65	5.4e-54	91.60	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	4.6e-53	90.00	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of MS001992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2P0	7.1e-57	100.00	60S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111007389 PE...	[more]
A0A7N2L0Z3	1.2e-56	99.17	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A445J5A9	3.5e-56	99.17	60S ribosomal protein L34 OS=Glycine soja OX=3848 GN=D0Y65_025099 PE=3 SV=1	[more]
C6SWN5	3.5e-56	99.17	Uncharacterized protein OS=Glycine max OX=3847 GN=100785061 PE=2 SV=1	[more]
A0A6J1I6I6	6.0e-56	99.17	60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ...	[more]

BLAST of MS001992 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	7.7e-56	91.67	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	3.8e-55	91.60	ribosomal protein L34	[more]
AT3G28900.1	3.2e-54	90.00	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	2.0e-43	91.30	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 26..43 score: 53.57 coord: 66..88 score: 45.34
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 1.9E-38 score: 130.6
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 4.5E-22 score: 79.5
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 7.5E-37 score: 127.1
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001992.1	MS001992.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome