MS001979 (gene) Bitter gourd (TR) v1

Overview
NameMS001979
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold30: 1433190 .. 1433377 (-)
RNA-Seq ExpressionMS001979
SyntenyMS001979
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAAAAGTTCCATGAAAACCCGAAACTGCTCTAAATTTGAGATTATGAACACTTCAAGTGTGTTTACTGATAAGATGAGGGCAAGGATCGGAATCACAGTTGATGTTAATTCATCGAGCAATTGTTACGCAAGGTTCTTGGATTCCGGATGAGTGAAGACGTCGGAGATTTGGTTTTGTATTCTTGT

mRNA sequence

GTAAAAAGTTCCATGAAAACCCGAAACTGCTCTAAATTTGAGATTATGAACACTTCAAGTGTGTTTACTGATAAGATGAGGGCAAGGATCGGAATCACAGTTGATGTTAATTCATCGAGCAATTGTTACAAGGTTCTTGGATTCCGGATGAGTGAAGACGTCGGAGATTTGGTTTTGTATTCTTGT

Coding sequence (CDS)

GTAAAAAGTTCCATGAAAACCCGAAACTGCTCTAAATTTGAGATTATGAACACTTCAAGTGTGTTTACTGATAAGATGAGGGCAAGGATCGGAATCACAGTTGATGTTAATTCATCGAGCAATTGTTACAAGGTTCTTGGATTCCGGATGAGTGAAGACGTCGGAGATTTGGTTTTGTATTCTTGT

Protein sequence

VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCYKVLGFRMSEDVGDLVLYSC
Homology
BLAST of MS001979 vs. NCBI nr
Match: XP_023518282.1 (uncharacterized protein LOC111781808 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           ++  +K RN SK E +N  + F +KMR R+GI V V+SS NCY     + LGF MS+DVG
Sbjct: 75  LRQKLKNRNFSKPEFINILNAFLEKMRGRVGIAVGVSSSDNCYTKILIEKLGFLMSKDVG 134

Query: 61  DLVLYSC 63
           ++VL +C
Sbjct: 135 EMVLDTC 141

BLAST of MS001979 vs. NCBI nr
Match: XP_023518283.1 (uncharacterized protein LOC111781808 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023518284.1 uncharacterized protein LOC111781808 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1  VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
          ++  +K RN SK E +N  + F +KMR R+GI V V+SS NCY     + LGF MS+DVG
Sbjct: 13 LRQKLKNRNFSKPEFINILNAFLEKMRGRVGIAVGVSSSDNCYTKILIEKLGFLMSKDVG 72

Query: 61 DLVLYSC 63
          ++VL +C
Sbjct: 73 EMVLDTC 79

BLAST of MS001979 vs. NCBI nr
Match: KAG6595064.1 (Extra-large guanine nucleotide-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           ++  +K RN SK E +N  + F +KMR RIGI V V+SS NCY     + LGF MS+D+G
Sbjct: 75  LRQKLKNRNFSKPEFINILNAFLEKMRERIGIAVGVSSSDNCYTKVLIEKLGFLMSKDIG 134

Query: 61  DLVLYSC 63
           ++VL +C
Sbjct: 135 EVVLDTC 141

BLAST of MS001979 vs. NCBI nr
Match: XP_022962653.1 (uncharacterized protein LOC111463072 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 5   MKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVGDLVL 63
           +K RN SK E +N  + F +KMR RIGI V V+SS NCY     + LGF MS+D+G++VL
Sbjct: 58  LKNRNFSKPEFINILNAFLEKMRERIGIAVGVSSSDNCYTKVLIEKLGFLMSKDIGEVVL 117

BLAST of MS001979 vs. NCBI nr
Match: XP_008440196.1 (PREDICTED: uncharacterized protein LOC103484732 [Cucumis melo] >XP_008440197.1 PREDICTED: uncharacterized protein LOC103484732 [Cucumis melo] >TYK12926.1 putative F6A14.6 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           +K  +K R+ SK E +N  + F +KM+ R+GI V V+ S NCY     + LGF MS+DVG
Sbjct: 75  LKQKLKNRSFSKPEFLNLLNAFLEKMKERVGIVVSVSPSDNCYTKVLIEKLGFLMSKDVG 134

Query: 61  DLVLYSC 63
           DLV  +C
Sbjct: 135 DLVFDTC 141

BLAST of MS001979 vs. ExPASy TrEMBL
Match: A0A6J1HFE7 (uncharacterized protein LOC111463072 OS=Cucurbita moschata OX=3662 GN=LOC111463072 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 5   MKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVGDLVL 63
           +K RN SK E +N  + F +KMR RIGI V V+SS NCY     + LGF MS+D+G++VL
Sbjct: 58  LKNRNFSKPEFINILNAFLEKMRERIGIAVGVSSSDNCYTKVLIEKLGFLMSKDIGEVVL 117

BLAST of MS001979 vs. ExPASy TrEMBL
Match: A0A1S3B166 (uncharacterized protein LOC103484732 OS=Cucumis melo OX=3656 GN=LOC103484732 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           +K  +K R+ SK E +N  + F +KM+ R+GI V V+ S NCY     + LGF MS+DVG
Sbjct: 75  LKQKLKNRSFSKPEFLNLLNAFLEKMKERVGIVVSVSPSDNCYTKVLIEKLGFLMSKDVG 134

Query: 61  DLVLYSC 63
           DLV  +C
Sbjct: 135 DLVFDTC 141

BLAST of MS001979 vs. ExPASy TrEMBL
Match: A0A5D3CR98 (Putative F6A14.6 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005210 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           +K  +K R+ SK E +N  + F +KM+ R+GI V V+ S NCY     + LGF MS+DVG
Sbjct: 75  LKQKLKNRSFSKPEFLNLLNAFLEKMKERVGIVVSVSPSDNCYTKVLIEKLGFLMSKDVG 134

Query: 61  DLVLYSC 63
           DLV  +C
Sbjct: 135 DLVFDTC 141

BLAST of MS001979 vs. ExPASy TrEMBL
Match: A0A0A0KFJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489910 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           +K  +K R+ SK E +N  + F  KM+ R+GI V V+SS NCY     + LGF MS+DVG
Sbjct: 75  LKQKLKNRHFSKPEFINLLNAFLVKMKERVGIVVSVSSSDNCYTKVLIEKLGFLMSKDVG 134

Query: 61  DLVLYSC 63
            LVL +C
Sbjct: 135 GLVLDTC 141

BLAST of MS001979 vs. ExPASy TrEMBL
Match: A0A6J1BYW7 (uncharacterized protein LOC111005949 OS=Momordica charantia OX=3673 GN=LOC111005949 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1   VKSSMKTRNCSKFEIMNTSSVFTDKMRARIGITVDVNSSSNCY-----KVLGFRMSEDVG 60
           +K  +K RN SK E +N  + F +KMR R+GITV V+SS   Y     + LGF +S+DV 
Sbjct: 75  LKQKLKNRNFSKPEFINIFNAFLEKMRERVGITVGVSSSDKSYTKVLIEKLGFLISKDVE 134

Query: 61  DLVLYSC 63
           DLVL +C
Sbjct: 135 DLVLDTC 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023518282.11.2e-0647.76uncharacterized protein LOC111781808 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023518283.11.2e-0647.76uncharacterized protein LOC111781808 isoform X2 [Cucurbita pepo subsp. pepo] >XP... [more]
KAG6595064.12.1e-0647.76Extra-large guanine nucleotide-binding protein 1, partial [Cucurbita argyrosperm... [more]
XP_022962653.13.6e-0650.79uncharacterized protein LOC111463072 [Cucurbita moschata][more]
XP_008440196.17.9e-0646.27PREDICTED: uncharacterized protein LOC103484732 [Cucumis melo] >XP_008440197.1 P... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HFE71.7e-0650.79uncharacterized protein LOC111463072 OS=Cucurbita moschata OX=3662 GN=LOC1114630... [more]
A0A1S3B1663.8e-0646.27uncharacterized protein LOC103484732 OS=Cucumis melo OX=3656 GN=LOC103484732 PE=... [more]
A0A5D3CR983.8e-0646.27Putative F6A14.6 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KFJ41.1e-0547.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489910 PE=4 SV=1[more]
A0A6J1BYW73.2e-0547.76uncharacterized protein LOC111005949 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001979.1MS001979.1mRNA