MS001953 (gene) Bitter gourd (TR) v1

Overview


Name	MS001953
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold30: 1242391 .. 1243681 (-)
RNA-Seq Expression	MS001953
Synteny	MS001953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTGATTCGATCACCAATGCTTCAATTTCCTTGGCCCCAAGCGCCCGGGATTTACCCTTGCCCAAGAAGAAGAGGGTGAGGACTCTCTCTCTCTTTCTATTCAGACGTAAATCTTCTCAATTTTTCTTTTATTTTAAATGCCGATGATTTTGTTTTTGTTTTCGTTTGATTATTGATTGCNGTTGTTCTAATATGCCGTAATTGTTTCGGTGGGGGTTCAGGTCAAGAATTCCAAATTGAAGCAGTCCAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTATAATTACTAATTATATTTCATATTGTTGTTAATTGAATTTATTTTATGGAACGGGATATGTGCATGTGAGAATTAGTTTTAAATCGATTTGGGTTCGCGAGTGATAGGTGCTGTAAAGAACAAAAAATGGAACGAAGAAGACAATCGCCTTGATTCAGTGGTCATTAAAACGAGCAAAGACGATAATCTTTCCTCCAAGAAAATAAATATGAGGGAAATAGGAGAAGACAATGGTGGATCGGTTCACCACGACAGCGATTTTTCGGAGTCGCCGTCTAACAGCCCCCCTAGTCTTGCCAGTAGTATCTTGGGTGGAAATGATTCCGGTCCTCATTTTACTGGGAGTAGCAGTAGCAGTAGCTGCCGTAGCAGCTCTAGCGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAAGGAGATGATGATGGCTTGGATGACTGGGAGGCTATTGCTGATGCTCTAGCCGCCACTGACAAGCAACATGATCAATGTTCCGAGTCTTCCCCTAGGGGTGATGCTGTTTCTCAATTGGATTCTTGCGGAGATAGCAGAAATGAGTTGGGTGTTGGAGATGGTGACTCGAAATTAGAATGTGGGAGAATTGCGCAGAGGGCTCCAATGAGTTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACTTTATCGAAGCAGCTTAGTTTACCAAATACAGACCGGCGTTATGGATGTGGAGGCATCCCTTGGGCCTGTGGTGGTGTCATGTCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTCCGGCTGTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGGTGCAGGAAGCCATATGAGTGTGATCCTGCTGACAGTGAGACAAATGTACATGGTGGCAGCCCGACGTTACCATTAGCTCGTTCTTGTAGCATGATTTCAAGGTCT

mRNA sequence

ATGGTAACTGATTCGATCACCAATGCTTCAATTTCCTTGGCCCCAAGCGCCCGGGATTTACCCTTGCCCAAGAAGAAGAGGGTGAGGACTCTCTCTCTCTTTCTATTCAGACGTAAATCTTCTCAATTTTTCTTTTATTTTAAAGCCGATGATTTTGTCAAGAATTCCAAATTGAAGCAGTCCAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAAGAACAAAAAATGGAACGAAGAAGACAATCGCCTTGATTCAGTGGTCATTAAAACGAGCAAAGACGATAATCTTTCCTCCAAGAAAATAAATATGAGGGAAATAGGAGAAGACAATGGTGGATCGGTTCACCACGACAGCGATTTTTCGGAGTCGCCGTCTAACAGCCCCCCTAGTCTTGCCAGTAGTATCTTGGGTGGAAATGATTCCGGTCCTCATTTTACTGGGAGTAGCAGTAGCAGTAGCTGCCGTAGCAGCTCTAGCGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAAGGAGATGATGATGGCTTGGATGACTGGGAGGCTATTGCTGATGCTCTAGCCGCCACTGACAAGCAACATGATCAATGTTCCGAGTCTTCCCCTAGGGGTGATGCTGTTTCTCAATTGGATTCTTGCGGAGATAGCAGAAATGAGTTGGGTGTTGGAGATGGTGACTCGAAATTAGAATGTGGGAGAATTGCGCAGAGGGCTCCAATGAGTTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACTTTATCGAAGCAGCTTAGTTTACCAAATACAGACCGGCGTTATGGATGTGGAGGCATCCCTTGGGCCTGTGGTGGTGTCATGTCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTCCGGCTGTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGGTGCAGGAAGCCATATGAGTGTGATCCTGCTGACAGTGAGACAAATGTACATGGTGGCAGCCCGACGTTACCATTAGCTCGTTCTTGTAGCATGATTTCAAGGTCT

Coding sequence (CDS)

ATGGTAACTGATTCGATCACCAATGCTTCAATTTCCTTGGCCCCAAGCGCCCGGGATTTACCCTTGCCCAAGAAGAAGAGGGTGAGGACTCTCTCTCTCTTTCTATTCAGACGTAAATCTTCTCAATTTTTCTTTTATTTTAAAGCCGATGATTTTGTCAAGAATTCCAAATTGAAGCAGTCCAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAAGAACAAAAAATGGAACGAAGAAGACAATCGCCTTGATTCAGTGGTCATTAAAACGAGCAAAGACGATAATCTTTCCTCCAAGAAAATAAATATGAGGGAAATAGGAGAAGACAATGGTGGATCGGTTCACCACGACAGCGATTTTTCGGAGTCGCCGTCTAACAGCCCCCCTAGTCTTGCCAGTAGTATCTTGGGTGGAAATGATTCCGGTCCTCATTTTACTGGGAGTAGCAGTAGCAGTAGCTGCCGTAGCAGCTCTAGCGGTTGTCGCTCGGGGAGTATAACGGAGGAGGAAGGAGATGATGATGGCTTGGATGACTGGGAGGCTATTGCTGATGCTCTAGCCGCCACTGACAAGCAACATGATCAATGTTCCGAGTCTTCCCCTAGGGGTGATGCTGTTTCTCAATTGGATTCTTGCGGAGATAGCAGAAATGAGTTGGGTGTTGGAGATGGTGACTCGAAATTAGAATGTGGGAGAATTGCGCAGAGGGCTCCAATGAGTTGCCGAGCATGGAGGCCTGATGATGCCTTTCGTCCTCAGAGTTTGCCCACTTTATCGAAGCAGCTTAGTTTACCAAATACAGACCGGCGTTATGGATGTGGAGGCATCCCTTGGGCCTGTGGTGGTGTCATGTCTGTGCCTACATCTTGTCCAATTTGCTTTGAAGACTTGGACCTTACAGACTCAAGTTTTTTACCTTGTTTCTGTGGATTCCGGCTGTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGGTGCAGGAAGCCATATGAGTGTGATCCTGCTGACAGTGAGACAAATGTACATGGTGGCAGCCCGACGTTACCATTAGCTCGTTCTTGTAGCATGATTTCAAGGTCT

Protein sequence

MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPLARSCSMISRS

Homology

[Close]

BLAST of MS001953 vs. NCBI nr
Match: XP_022134843.1 (uncharacterized protein LOC111007016 [Momordica charantia])

HSP 1 Score: 677.2 bits (1746), Expect = 8.2e-191
Identity = 344/370 (92.97%), Postives = 344/370 (92.97%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSITNASISLAPSARDLPLPKKKR                         VKNSKLKQ
Sbjct: 1   MVTDSITNASISLAPSARDLPLPKKKR-------------------------VKNSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIG DNGGSVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGGDNGGSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG 180
           HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG
Sbjct: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG 180

Query: 181 LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ 240
           LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ
Sbjct: 181 LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ 240

Query: 241 RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE 300
           RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE
Sbjct: 241 RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE 300

Query: 301 DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL 360
           DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL
Sbjct: 301 DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL 345

Query: 361 ARSCSMISRS 371
           ARSCSMISRS
Sbjct: 361 ARSCSMISRS 345

[Close]

BLAST of MS001953 vs. NCBI nr
Match: XP_008453149.1 (PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo])

HSP 1 Score: 608.2 bits (1567), Expect = 4.7e-170
Identity = 313/374 (83.69%), Postives = 327/374 (87.43%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 349

Query: 361 TLPLARSCSMISRS 371
           TLPLARSCSMISRS
Sbjct: 361 TLPLARSCSMISRS 349

[Close]

BLAST of MS001953 vs. NCBI nr
Match: KAA0057903.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 607.1 bits (1564), Expect = 1.0e-169
Identity = 312/373 (83.65%), Postives = 326/373 (87.40%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 348

Query: 361 TLPLARSCSMISR 370
           TLPLARSCSMISR
Sbjct: 361 TLPLARSCSMISR 348

[Close]

BLAST of MS001953 vs. NCBI nr
Match: TYJ98591.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 605.1 bits (1559), Expect = 3.9e-169
Identity = 311/372 (83.60%), Postives = 325/372 (87.37%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 347

Query: 361 TLPLARSCSMIS 369
           TLPLARSCSMIS
Sbjct: 361 TLPLARSCSMIS 347

[Close]

BLAST of MS001953 vs. NCBI nr
Match: XP_004138290.2 (uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetical protein Csa_013954 [Cucumis sativus])

HSP 1 Score: 604.7 bits (1558), Expect = 5.2e-169
Identity = 311/374 (83.16%), Postives = 326/374 (87.17%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDD+LSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQHDQCSESSPRG+ +SQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLP TDRR+GCGG+ WACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETNV  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSP 349

Query: 361 TLPLARSCSMISRS 371
           TLPLARSCSMISRS
Sbjct: 361 TLPLARSCSMISRS 349

[Close]

BLAST of MS001953 vs. ExPASy Swiss-Prot
Match: O95628 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 292 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYECDPA 346
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of MS001953 vs. ExPASy Swiss-Prot
Match: Q8BT14 (CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 292 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYECDPA 346
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of MS001953 vs. ExPASy Swiss-Prot
Match: P34909 (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOT2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 295 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL---EEDGRCPGCRKPYE 342
           CP+C E +D+TD +F PC CG+++C FC+  I    E +GRCP CR+ Y+
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

[Close]

BLAST of MS001953 vs. ExPASy Swiss-Prot
Match: Q09818 (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-09
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 295 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE-DGRCPGCRKPY 341
           CP+C E++D++D +F PC CG+R+C FC   I E+ +GRCP CR+ Y
Sbjct: 18  CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64

[Close]

BLAST of MS001953 vs. ExPASy Swiss-Prot
Match: A2YU42 (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica OX=39946 GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 22/58 (37.93%), Postives = 29/58 (50.00%), Query Frame = 0


Query: 303 DLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL 361
           D      LPC C F++C  C    ++  G CPGC+ PY+    D   +V G  PTL L
Sbjct: 158 DERGDDILPCECDFKICADCFADAVKNGGACPGCKDPYKATELD---DVVGARPTLSL 212

[Close]

BLAST of MS001953 vs. ExPASy TrEMBL
Match: A0A6J1C357 (uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007016 PE=4 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 4.0e-191
Identity = 344/370 (92.97%), Postives = 344/370 (92.97%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSITNASISLAPSARDLPLPKKKR                         VKNSKLKQ
Sbjct: 1   MVTDSITNASISLAPSARDLPLPKKKR-------------------------VKNSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIG DNGGSVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGGDNGGSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG 180
           HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG
Sbjct: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEGDDDG 180

Query: 181 LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ 240
           LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ
Sbjct: 181 LDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQ 240

Query: 241 RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE 300
           RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE
Sbjct: 241 RAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFE 300

Query: 301 DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL 360
           DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL
Sbjct: 301 DLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPL 345

Query: 361 ARSCSMISRS 371
           ARSCSMISRS
Sbjct: 361 ARSCSMISRS 345

[Close]

BLAST of MS001953 vs. ExPASy TrEMBL
Match: A0A1S3BVJ1 (uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.3e-170
Identity = 313/374 (83.69%), Postives = 327/374 (87.43%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 349

Query: 361 TLPLARSCSMISRS 371
           TLPLARSCSMISRS
Sbjct: 361 TLPLARSCSMISRS 349

[Close]

BLAST of MS001953 vs. ExPASy TrEMBL
Match: A0A5A7UPV5 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002030 PE=4 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 5.0e-170
Identity = 312/373 (83.65%), Postives = 326/373 (87.40%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 348

Query: 361 TLPLARSCSMISR 370
           TLPLARSCSMISR
Sbjct: 361 TLPLARSCSMISR 348

[Close]

BLAST of MS001953 vs. ExPASy TrEMBL
Match: A0A5D3BIS7 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002110 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.9e-169
Identity = 311/372 (83.60%), Postives = 325/372 (87.37%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           MVTDSI NASISLAP+ARDLPLPKKKRVR                         NSKLKQ
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVR-------------------------NSKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGSVH 120
           SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDDNLSS+KINMREIGE+N  SVH
Sbjct: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVH 120

Query: 121 HDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT----EEEG 180
           H SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT    EEEG
Sbjct: 121 HHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEG 180

Query: 181 DDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECG 240
           DDD LDDWEAIADALAATDKQ DQCSESSPRG+ VSQLDSCGD RNELGVGDGDS +E G
Sbjct: 181 DDDCLDDWEAIADALAATDKQRDQCSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERG 240

Query: 241 RIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCP 300
           RI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLPNTDRR+GCGG+PWACGGV+ VPTSCP
Sbjct: 241 RIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCP 300

Query: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSP 360
           ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+ETN+  GSP
Sbjct: 301 ICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSP 347

Query: 361 TLPLARSCSMIS 369
           TLPLARSCSMIS
Sbjct: 361 TLPLARSCSMIS 347

[Close]

BLAST of MS001953 vs. ExPASy TrEMBL
Match: A0A0A0LP94 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G006330 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.3e-159
Identity = 285/322 (88.51%), Postives = 300/322 (93.17%), Query Frame = 0


Query: 53  VKNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIG 112
           V+NSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKT KDD+LSS+KINMREIG
Sbjct: 2   VRNSKLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTRKDDDLSSEKINMREIG 61

Query: 113 EDNGGSVHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT 172
           E+N  SVHH SD+S+SPSNSPPSL SSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT
Sbjct: 62  EENDRSVHHHSDYSDSPSNSPPSLGSSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSIT 121

Query: 173 ----EEEGDDDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGD 232
               EEEGDDD LDDWEAIADALAATDKQHDQCSESSPRG+ +SQLDSCGD RNELGVGD
Sbjct: 122 EEEEEEEGDDDCLDDWEAIADALAATDKQHDQCSESSPRGNVISQLDSCGDRRNELGVGD 181

Query: 233 GDSKLECGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGV 292
           GDS +E GRI QRA M+CRAWRPDDAFRPQSLPTLSKQLSLP TDRR+GCGG+ WACGGV
Sbjct: 182 GDSSVERGRIVQRASMNCRAWRPDDAFRPQSLPTLSKQLSLPTTDRRFGCGGVSWACGGV 241

Query: 293 MSVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSE 352
           + VPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPY+ DPAD+E
Sbjct: 242 IPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADNE 301

Query: 353 TNVHGGSPTLPLARSCSMISRS 371
           TNV  GSPTLPLARSCSMISRS
Sbjct: 302 TNVLAGSPTLPLARSCSMISRS 323

[Close]

BLAST of MS001953 vs. TAIR 10
Match: AT5G62910.1 (RING/U-box superfamily protein )

HSP 1 Score: 250.4 bits (638), Expect = 2.3e-66
Identity = 179/381 (46.98%), Postives = 229/381 (60.10%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           M+TDSITNAS + AP  RD    KKKR                          K++K+KQ
Sbjct: 1   MITDSITNASATSAP--RD--SGKKKRNN------------------------KSAKMKQ 60

Query: 61  SKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGS-- 120
           +KL +RREQWLS+ AV NK+  EE +     V ++ K  + SS K+   E  ++NGG+  
Sbjct: 61  NKLGLRREQWLSQVAVSNKEVKEERS-----VNRSQKPHHESSDKVRREE--DNNGGNNL 120

Query: 121 VHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEG-- 180
           +HH+S F ESPSNS        +GG  S  +F+G SS SS  SSSSG  SG+ITEEE   
Sbjct: 121 LHHES-FMESPSNSS-------VGGTYSSTNFSGRSSRSS--SSSSGFCSGNITEEENVD 180

Query: 181 -DDDG-LDDWEAIADALAATD--KQHDQCSESSPRGDAVSQLDS--CGDSRNELG--VGD 240
            DDDG +DDWEA+ADALAA +  ++  +  ES     +V Q  S  C  S ++    VG 
Sbjct: 181 DDDDGCVDDWEAVADALAAEEEIEKKSRPLESVKEQVSVGQSASNVCDSSISDASDVVGV 240

Query: 241 GDSKLECGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGV 300
            D K EC R++ R   S RAWR DD  RPQ LP L+KQLS P  D+R+            
Sbjct: 241 EDPKQECLRVSSRKQTSNRAWRLDDDLRPQGLPNLAKQLSFPELDKRFSS---------- 300

Query: 301 MSVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSE 360
           +++P+SCPIC+EDLDLTDS+FLPC CGFRLCLFCHK I + DGRCPGCRKPYE +   +E
Sbjct: 301 VAIPSSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAE 326

Query: 361 TNVHGGSPTLPLARSCSMISR 370
           T++ GG  T+ LARS SM  +
Sbjct: 361 TSIQGGGLTIRLARSSSMFCK 326

[Close]

BLAST of MS001953 vs. TAIR 10
Match: AT3G48070.1 (RING/U-box superfamily protein )

HSP 1 Score: 239.6 bits (610), Expect = 4.1e-63
Identity = 175/376 (46.54%), Postives = 216/376 (57.45%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           M++DSITNAS + AP+ARD    KKKR                          +++KLKQ
Sbjct: 1   MISDSITNASATSAPTARD--FGKKKRTN------------------------RSAKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNK--KWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGS 120
           SKL +RREQWLS+ A+ NK  K   E NR     I + K D     +  +  + EDN G+
Sbjct: 61  SKLGLRREQWLSQVAMINKGDKEEMESNRR----IGSEKPDQRDLPR-PVENLDEDNNGT 120

Query: 121 VHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEE-GD 180
             H+S F ES SNSP    +SIL G +S P+F+ SSS     S S G  SG+ITEEE  D
Sbjct: 121 HRHES-FIESLSNSP----NSILSGMNSIPNFSSSSS-----SGSGGSCSGNITEEEDAD 180

Query: 181 DDG-LDDWEAIADALAATDKQHDQCS--ESSPRGDAVSQLDSCGDSRNELGVGDGDSKLE 240
           DDG LDDWEAIADALAA D++H++ +  ES    + + Q    G +   L     DS+  
Sbjct: 181 DDGCLDDWEAIADALAADDEKHEKENPPESCQEHEDIKQSALIGGADVVLRDAKADSQ-- 240

Query: 241 CGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTS 300
                +R   S +AWRPDD  RPQ LP L KQ S P  +  +           V  VP+S
Sbjct: 241 -----RRKQKSNQAWRPDDKLRPQGLPNLEKQRSFPVMNLHF---------SSVTVVPSS 300

Query: 301 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGG 360
           CPIC+EDLDLTDS+FLPC CGFRLCLFCHK I + DGRCPGCRKPYE +    E +V GG
Sbjct: 301 CPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGG 319

Query: 361 SPTLPLARSCSMISRS 371
             T+ LARS SM  RS
Sbjct: 361 GLTIRLARSSSMFCRS 319

[Close]

BLAST of MS001953 vs. TAIR 10
Match: AT3G48070.2 (RING/U-box superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 9.0e-63
Identity = 174/375 (46.40%), Postives = 215/375 (57.33%), Query Frame = 0


Query: 1   MVTDSITNASISLAPSARDLPLPKKKRVRTLSLFLFRRKSSQFFFYFKADDFVKNSKLKQ 60
           M++DSITNAS + AP+ARD    KKKR                          +++KLKQ
Sbjct: 1   MISDSITNASATSAPTARD--FGKKKRTN------------------------RSAKLKQ 60

Query: 61  SKLDVRREQWLSRGAVKNK--KWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNGGS 120
           SKL +RREQWLS+ A+ NK  K   E NR     I + K D     +  +  + EDN G+
Sbjct: 61  SKLGLRREQWLSQVAMINKGDKEEMESNRR----IGSEKPDQRDLPR-PVENLDEDNNGT 120

Query: 121 VHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEE-GD 180
             H+S F ES SNSP    +SIL G +S P+F+ SSS     S S G  SG+ITEEE  D
Sbjct: 121 HRHES-FIESLSNSP----NSILSGMNSIPNFSSSSS-----SGSGGSCSGNITEEEDAD 180

Query: 181 DDG-LDDWEAIADALAATDKQHDQCS--ESSPRGDAVSQLDSCGDSRNELGVGDGDSKLE 240
           DDG LDDWEAIADALAA D++H++ +  ES    + + Q    G +   L     DS+  
Sbjct: 181 DDGCLDDWEAIADALAADDEKHEKENPPESCQEHEDIKQSALIGGADVVLRDAKADSQ-- 240

Query: 241 CGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTS 300
                +R   S +AWRPDD  RPQ LP L KQ S P  +  +           V  VP+S
Sbjct: 241 -----RRKQKSNQAWRPDDKLRPQGLPNLEKQRSFPVMNLHF---------SSVTVVPSS 300

Query: 301 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSETNVHGG 360
           CPIC+EDLDLTDS+FLPC CGFRLCLFCHK I + DGRCPGCRKPYE +    E +V GG
Sbjct: 301 CPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGG 318

Query: 361 SPTLPLARSCSMISR 370
             T+ LARS SM  R
Sbjct: 361 GLTIRLARSSSMFCR 318

[Close]

BLAST of MS001953 vs. TAIR 10
Match: AT1G74870.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-16
Identity = 88/318 (27.67%), Postives = 137/318 (43.08%), Query Frame = 0


Query: 57  KLKQSKLDVRREQWLSRGAVKNKKWNEEDNRLDSVVIKTSKDDNLSSKKINMREIGEDNG 116
           KLKQ K+D RR+QW+S+    N    E   RL S++ K +   +  + +I+  +  ED+ 
Sbjct: 30  KLKQWKIDARRKQWISQWKKANVDEEEIGRRLRSLLEKLT---DQKAWRIDYDD-DEDDE 89

Query: 117 GSVHHDSDFSESPSNSPPSLASSILGGNDSGPHFTGSSSSSSCRSSSSGCRSGSITEEEG 176
             +   S F+ SP        +S+L   DS              S    C S  +TEEE 
Sbjct: 90  IDLERTSSFASSP--------TSVLKRKDS-------------VSGDCFCCSKQMTEEEE 149

Query: 177 D--DDGLDDWEAIADALAATDKQHDQCSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLE 236
           +  DD  D+W+   DAL + +  +++ S          + D   D+   +         +
Sbjct: 150 EVFDDAYDNWDGFKDALNSFENDNNESSRLVTEDFEQEEEDLIPDTSQRMN--------K 209

Query: 237 CGRIAQRAPMSCRAWRPDDAFRPQSLPTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTS 296
           C +  + AP +             ++   S +    N++++ G G               
Sbjct: 210 CKQ--EAAPGN-----------QTTIHRNSNKKKRSNSEKQRGDG------------DEE 269

Query: 297 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECDPADSET--NVH 356
           CPIC E +D TD  F PC CGFR+CLFCH +I E + RCP CRK Y+     S       
Sbjct: 270 CPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKKTSKKSGEVGYQQ 289

Query: 357 GGSPTLPLARSCSMISRS 371
            G  T+PL+ S   + R+
Sbjct: 330 RGRGTIPLSPSFRGLDRA 289

[Close]

BLAST of MS001953 vs. TAIR 10
Match: AT5G60170.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-10
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 294 SCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE------DGRCPGCRKPYE------ 352
           +CP+C E++DLTD    PC CG+++C++C   I++       +GRCP CR PY+      
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKEKIVG 67

The following BLAST results are available for this feature:

BLAST of MS001953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134843.1	8.2e-191	92.97	uncharacterized protein LOC111007016 [Momordica charantia]	[more]
XP_008453149.1	4.7e-170	83.69	PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo]	[more]
KAA0057903.1	1.0e-169	83.65	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98591.1	3.9e-169	83.60	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_004138290.2	5.2e-169	83.16	uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetica...	[more]

BLAST of MS001953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O95628	4.2e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 S...	[more]
Q8BT14	4.2e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 ...	[more]
P34909	1.1e-09	48.00	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]
Q09818	1.5e-09	51.06	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]
A2YU42	1.9e-04	37.93	Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica OX=39946 GN=CSL...	[more]

BLAST of MS001953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C357	4.0e-191	92.97	uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A1S3BVJ1	2.3e-170	83.69	uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=...	[more]
A0A5A7UPV5	5.0e-170	83.65	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3BIS7	1.9e-169	83.60	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LP94	2.3e-159	88.51	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G006330 P...	[more]

BLAST of MS001953 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62910.1	2.3e-66	46.98	RING/U-box superfamily protein	[more]
AT3G48070.1	4.1e-63	46.54	RING/U-box superfamily protein	[more]
AT3G48070.2	9.0e-63	46.40	RING/U-box superfamily protein	[more]
AT1G74870.1	4.9e-16	27.67	RING/U-box superfamily protein	[more]
AT5G60170.1	1.8e-10	37.84	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14570	zf-RING_4	coord: 295..341 e-value: 2.9E-18 score: 65.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..170
None	No IPR available	PANTHER	PTHR12603:SF7	RING/U-BOX SUPERFAMILY PROTEIN	coord: 9..368
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 293..345
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 290..352 e-value: 8.7E-17 score: 62.2
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 9..368
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 295..337 score: 9.169853
IPR039515	NOT4, modified RING finger, HC subclass (C4C4-type)	CDD	cd16618	mRING-HC-C4C4_CNOT4	coord: 295..338 e-value: 5.73707E-18 score: 74.5732

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001953.1	MS001953.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0004842	ubiquitin-protein transferase activity