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MS001935 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTATAATCTTATTATGCCCTTGAACTTTGGTCTTTGTTAATAACCTCTAAATTTGTATTTTGGTTCATTCGTTTTGCAAAATTTTTCCCAAGATACTTTTCTTTGGGAAAATTGATCCGAATTTATACCTGGGCGTCTCCGATGTAGTGTAATTTCAAGTCTTGAAGGCTTCACTCACCCATGGGAATGAATACAAATTTATCAAATACTGCCACTGCATTAAAAGAAATAATCCTTCTCATCGCACATGGAGTCTGAATGCATCTTTTAGGATAACAAGACTAGAAGTGGCTGAGGAGTACTTAGTCCAGTTGAAACAATTGGTCACTCGGGGCGGTGGATTCTACTTCATTTGATGTAACATTATCATTAATGCTTCACGGTTTTATGTTACTGTATTTTATATAAGCATAACAGGCGAAGAGGAGTAACTATTTGTTTTAAGTAAATATGCTTGACTGATTTCACATACAAAATCTAATTAAGCAATAGCACTTTGGAGACATTGTTGTGTATGTATGTATCTGATCGTTTGCAAAGTAAAAATAGGAGCAAGGAACCTAAAGAGCGTAGCAGTCATGTGATTTATGTCTGATCTGTCTGCATAGATTCTCAACCTGTCAGTGCTTTCTTATTGGAAACTGTGTTATGCGTGCCAAGTGCCATATCATCAGCCCTTGAAAATTTAATGTGCACCTTTGTAATGTTTTATAAATTGTCCTGTGGTCGCACATGTGATATGAAAATTTTGTTTTGTCAATATTTTTAGCAATAGCATCTATTCGGTGTGGTTACTCTCTTTTGATGAATTTGTGGTACTGAAAAATGCTTTCTCTTTGTCAAGTATTTTGTTGGAGGATTTTCAATGCATACTTCTCATGTCAATATGGATATTGCAGCTTTACTCGTATAGGAGAAAATGAATTCCTAGTAGTTTGGTTGTGCCACCTATGTGAGTTATTGGTATCTTATGAACTTCCTGACATGGAAATTCTGTAGGATTAGCTGATGCACATACAGGTTGGCCTGGATACTTTCTTTAGTATATAATGATGAATCTCATGGCTGACATTGTACGCATTCTTCCGAAGCTATATATTGAGATTCTAATTGCAAAATCTTTATGCTGTCAGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAACTTGACAGAACTTTTGCATTCTTTTTTAAATTGTAAATATCTCTTCCATTTGATTTCTACCCTTCTCCTCGTCCTTATTAAGTTCGCGATATCATAGCACAGATAATAACTATCCTTTCCCTACTTTTCCATACTGATCTCAATCGTGGTTGTTGGTGATCAAAATTCAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL Homology
BLAST of MS001935 vs. NCBI nr
Match: XP_022135437.1 (39S ribosomal protein L47, mitochondrial [Momordica charantia]) HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70 Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of MS001935 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima]) HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65 Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0
BLAST of MS001935 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]) HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64 Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0
BLAST of MS001935 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus]) HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64 Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 0
BLAST of MS001935 vs. NCBI nr
Match: XP_022921695.1 (39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921697.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_023516339.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023516340.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63 Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0
BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0
BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0
BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09 Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08 Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 0
BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1) HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70 Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65 Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0
BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64 Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 0
BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1E238 (39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429866 PE=3 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64 Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0
BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64 Identity = 132/143 (92.31%), Postives = 136/143 (95.10%), Query Frame = 0
BLAST of MS001935 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein ) HSP 1 Score: 223.8 bits (569), Expect = 8.8e-59 Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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