MS001935 (gene) Bitter gourd (TR) v1

Overview


Name	MS001935
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	39S ribosomal protein L47, mitochondrial
Location	scaffold30: 1133360 .. 1135093 (-)
RNA-Seq Expression	MS001935
Synteny	MS001935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTATAATCTTATTATGCCCTTGAACTTTGGTCTTTGTTAATAACCTCTAAATTTGTATTTTGGTTCATTCGTTTTGCAAAATTTTTCCCAAGATACTTTTCTTTGGGAAAATTGATCCGAATTTATACCTGGGCGTCTCCGATGTAGTGTAATTTCAAGTCTTGAAGGCTTCACTCACCCATGGGAATGAATACAAATTTATCAAATACTGCCACTGCATTAAAAGAAATAATCCTTCTCATCGCACATGGAGTCTGAATGCATCTTTTAGGATAACAAGACTAGAAGTGGCTGAGGAGTACTTAGTCCAGTTGAAACAATTGGTCACTCGGGGCGGTGGATTCTACTTCATTTGATGTAACATTATCATTAATGCTTCACGGTTTTATGTTACTGTATTTTATATAAGCATAACAGGCGAAGAGGAGTAACTATTTGTTTTAAGTAAATATGCTTGACTGATTTCACATACAAAATCTAATTAAGCAATAGCACTTTGGAGACATTGTTGTGTATGTATGTATCTGATCGTTTGCAAAGTAAAAATAGGAGCAAGGAACCTAAAGAGCGTAGCAGTCATGTGATTTATGTCTGATCTGTCTGCATAGATTCTCAACCTGTCAGTGCTTTCTTATTGGAAACTGTGTTATGCGTGCCAAGTGCCATATCATCAGCCCTTGAAAATTTAATGTGCACCTTTGTAATGTTTTATAAATTGTCCTGTGGTCGCACATGTGATATGAAAATTTTGTTTTGTCAATATTTTTAGCAATAGCATCTATTCGGTGTGGTTACTCTCTTTTGATGAATTTGTGGTACTGAAAAATGCTTTCTCTTTGTCAAGTATTTTGTTGGAGGATTTTCAATGCATACTTCTCATGTCAATATGGATATTGCAGCTTTACTCGTATAGGAGAAAATGAATTCCTAGTAGTTTGGTTGTGCCACCTATGTGAGTTATTGGTATCTTATGAACTTCCTGACATGGAAATTCTGTAGGATTAGCTGATGCACATACAGGTTGGCCTGGATACTTTCTTTAGTATATAATGATGAATCTCATGGCTGACATTGTACGCATTCTTCCGAAGCTATATATTGAGATTCTAATTGCAAAATCTTTATGCTGTCAGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAACTTGACAGAACTTTTGCATTCTTTTTTAAATTGTAAATATCTCTTCCATTTGATTTCTACCCTTCTCCTCGTCCTTATTAAGTTCGCGATATCATAGCACAGATAATAACTATCCTTTCCCTACTTTTCCATACTGATCTCAATCGTGGTTGTTGGTGATCAAAATTCAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG

mRNA sequence

ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG

Coding sequence (CDS)

ATGTTTTTGACACGAGTGTTTGGGAGAACACTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCAGCTGCTGCTTCTACCGTCCGGACAGGCTATAATCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACTCAGCGCCAGATGCTTCATGCACAAAATCTAAGGTTTCTTAACCCAGAACGCATTCCCAAGGTGAGGAAGTCCCTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCACGAAGATCTGCGGAGATGAAGAGAATGATAAACGCTCTG

Protein sequence

MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLTERAIEEPDPRRSAEMKRMINAL

Homology

[Close]

BLAST of MS001935 vs. NCBI nr
Match: XP_022135437.1 (39S ribosomal protein L47, mitochondrial [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA
Sbjct: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAIEEPDPRRSAEMKRMINAL
Sbjct: 121 ERAIEEPDPRRSAEMKRMINAL 142

[Close]

BLAST of MS001935 vs. NCBI nr
Match: XP_022988417.1 (39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988420.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRV GR  LAAARSETSSAAAAAST  TGYNPLEEFFEADRSPDDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSAAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 ERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of MS001935 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSSA  AAA+T R GYNPLEEFFEADRSPDDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKS+CRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 143
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of MS001935 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F NPERIPKVRKS+CRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 143
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of MS001935 vs. NCBI nr
Match: XP_022921695.1 (39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921697.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_023516339.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023516340.1 39S ribosomal protein L47, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 ERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 36  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 95
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 96  NLRFLNPERIPKVRKSLCRIKQVLTER 123
            L   +PER+ KV  S+  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]

BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 36  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 95
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 96  NLRFLNPERIPKVRKSLCRIKQVLTER 123
            L   +PER+ KV  S+  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]

BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 36  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 95
           LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 64  LEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 123

Query: 96  NLRFLNPERIPKVRKSLCRIKQVLTER 123
            L   +PER+ KV  S+  + +V+ ER
Sbjct: 124 RLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]

BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 36  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLH 95
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 96  AQNLRFLNP---ERIPKVRKSLCRIKQVLTERAIEEPDPRRSAE 135
              L F      ER   VR+++  IK VLTER     D  + AE
Sbjct: 159 KSGLGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAE 202

[Close]

BLAST of MS001935 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 16  RSETSSAAAAASTVRTGY----------------NPLEEFFEADRS-PDDDKPVVYGRSW 75
           RS  +SA  AA  +  G+                +PL  FF   ++ P   +   +GR+W
Sbjct: 2   RSTLASAQKAAVRIPKGFVFPVPKVKSAPKVSDTHPLWNFFRDKQALPPPSEEAKFGRAW 61

Query: 76  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF--LNPERIPKVRKSLCRIK 123
            A ELR KS++DL+ LWY  L+EKN+L TQR  +    L     + ER+  V K++  IK
Sbjct: 62  AAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIPKASNERVLAVNKTMAAIK 121

[Close]

BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA
Sbjct: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAIEEPDPRRSAEMKRMINAL
Sbjct: 121 ERAIEEPDPRRSAEMKRMINAL 142

[Close]

BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRV GR  LAAARSETSSAAAAAST  TGYNPLEEFFEADRSPDDDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSAAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 ERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F NPERIPKVRKS+CRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 143
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A6J1E238 (39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429866 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 129/142 (90.85%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWKA 60
           MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKA
Sbjct: 1   MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKA 60

Query: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVLT 120
           SELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERIPKVRKS+CRIKQVLT
Sbjct: 61  SELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLT 120

Query: 121 ERAIEEPDPRRSAEMKRMINAL 143
           ERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 ERAIDEPDPRRSAEMKRMVNAL 142

[Close]

BLAST of MS001935 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 132/143 (92.31%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF NPERI KVRKS+CRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 143
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of MS001935 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 223.8 bits (569), Expect = 8.8e-59
Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MFLTRVFGRTLLAA--ARSETSSAAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSW 60
           MFLTR  GR  LAA  ARSE+++AAAAAST+RT  NPLEEFFE DRS D+DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSLCRIKQV 120
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++F NPERIPKVR+S+CRIK V
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 121 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPD RRSAEMKRM+N +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:

BLAST of MS001935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135437.1	2.1e-70	99.30	39S ribosomal protein L47, mitochondrial [Momordica charantia]	[more]
XP_022988417.1	2.7e-65	92.96	39S ribosomal protein L47, mitochondrial [Cucurbita maxima] >XP_022988419.1 39S ...	[more]
XP_038879389.1	1.3e-64	93.01	39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S...	[more]
XP_004138121.1	5.0e-64	92.31	39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti...	[more]
XP_022921695.1	1.5e-63	90.85	39S ribosomal protein L47, mitochondrial [Cucurbita moschata] >XP_022921696.1 39...	[more]

BLAST of MS001935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K2Y7	3.5e-12	47.13	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
Q08DT6	6.1e-12	47.13	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
Q9HD33	2.3e-11	45.98	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
Q2H080	6.3e-09	40.38	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]
P87232	1.1e-08	35.71	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]

BLAST of MS001935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2P6	1.0e-70	99.30	39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JCZ2	1.3e-65	92.96	39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A0A0LS48	2.4e-64	92.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1	[more]
A0A6J1E238	7.1e-64	90.85	39S ribosomal protein L47, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BWK4	9.2e-64	92.31	39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926...	[more]

BLAST of MS001935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07830.1	8.8e-59	80.56	ribosomal protein L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	6.10.330.20		coord: 31..132 e-value: 1.5E-29 score: 104.0
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 62..122 e-value: 6.3E-6 score: 24.1
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 36..122 e-value: 6.3E-33 score: 112.8
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 1..142
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 61..122 e-value: 2.54421E-11 score: 53.6455
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 58..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001935.1	MS001935.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome