MS001851 (gene) Bitter gourd (TR) v1

Overview


Name	MS001851
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DET1- and DDB1-associated protein 1
Location	scaffold30: 386626 .. 387813 (+)
RNA-Seq Expression	MS001851
Synteny	MS001851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACTCCATTTTGTACCCAGAGGATCAAGACATAAAGACAAATCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGTAGCTGCAGCTGACTCCTCCCGGAAGAGGTACCGTTGTAACTTATCTAAGTAAATCTGTACTGTATTTTTAAGTTTCTAGTTGGTCAGTTTTTGTTGAAACTGTCATATTTTGCTGCATTTCTCTTATGTGGCATTGGAAGCAAACAATAGATTGTCGTTTTTCTTATAATATGTTGCTCATAGCATACATCATTGTATTCTTTGTTTGAACACATAATTTCGGTTTTGGCATCTACGTAACAATGAGTCTTGGTTATGCTACCCTTATCTTTCCAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCGAAGAGGGCCAGCGCACAAGTATGTTCAACCAAAGGTACGTTCTGGTCGACCATGTATACAGAAAGTAACCATTGACACATTATTCACTGCTAATATTCTTCACAAGAGTTAACTAAATCCTGCTTTTATTTCTCTTTGAATGTCTGTGCAAAGATTAATGTAGCCTAGTCATTCTTTGCAAGAGTTTTATCGGTAGGACCTTTCATTGTTAGGATCAGTTTGTCGTGGTGCTTTTGTTTTTTTTTTTAAATATATTTTCTCATTTAATCCATTTATTTTTGAGGCATTAAATTTATCAGGTGCTTTTCTAGACTCCTAAATTTATTGTGTATATTGAGGAAAAAGAAGATGTGACCAATATGCTGACTCCTCAAGAGTGAAAGGAAGAACATAAAATCATTACTGTCTCCAAAAAAAACCCAGCATATCATACTTCTTTAGTGATTAACGTCTACAAATCTGTCCAACGGTCAATATTAGTTATTAAGATATATTTGAAAATTTAAATCACAAAGGCCATTCAGGGGAAGATCTATTTCGACTTTCTTTATCTAGTAAATCATTATAGAGTTTCTTTAGAATTTTGTTCCAAATCTGACAATTGTGGTGGCTAATATCATCATGCATCCAGGAGCATCAAACAGTGAAGTACCGAGTAAGGATCTCTATAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAGAGGCCTTTCGCCCAAAGGAAAGAAGGCAAGTATATGTTATCGTAATCAGATCTGTAGTAGC

mRNA sequence

CTTCACTCCATTTTGTACCCAGAGGATCAAGACATAAAGACAAATCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGTAGCTGCAGCTGACTCCTCCCGGAAGAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCGAAGAGGGCCAGCGCACAAGTATGTTCAACCAAAGGAGCATCAAACAGTGAAGTACCGAGTAAGGATCTCTATAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAGAGGCCTTTCGCCCAAAGGAAAGAAGGCAAGTATATGTTATCGTAATCAGATCTGTAGTAGC

Coding sequence (CDS)

CTTCACTCCATTTTGTACCCAGAGGATCAAGACATAAAGACAAATCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGTAGCTGCAGCTGACTCCTCCCGGAAGAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCGAAGAGGGCCAGCGCACAAGTATGTTCAACCAAAGGAGCATCAAACAGTGAAGTACCGAGTAAGGATCTCTATAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAGAGGCCTTTCGCCCAAAGGAAAGAAGGCAAGTATATGTTATCGTAATCAGATCTGTAGTAGC

Protein sequence

LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYRNQICSS

Homology

[Close]

BLAST of MS001851 vs. NCBI nr
Match: XP_022135549.1 (uncharacterized protein LOC111007476 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 8.2e-41
Identity = 98/108 (90.74%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS
Sbjct: 43  LHDTSPPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCSTKGASNSEVPSK LYNLTVERLRALLKARGLSPKGKK  +  R
Sbjct: 103 AQVCSTKGASNSEVPSKHLYNLTVERLRALLKARGLSPKGKKDELISR 150

[Close]

BLAST of MS001851 vs. NCBI nr
Match: KAA0057775.1 (apoptotic chromatin condensation inducer in the nucleus [Cucumis melo var. makuwa] >TYJ98456.1 apoptotic chromatin condensation inducer in the nucleus [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A 
Sbjct: 43  LHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKA- 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYRNQIC 113
           AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +GKKASI YRNQ C
Sbjct: 103 AQVCSSKGASNNETPSKDLQNLTVERLRALLKAKGLSLRGKKASIFYRNQSC 153

[Close]

BLAST of MS001851 vs. NCBI nr
Match: KAG7021398.1 (hypothetical protein SDJN02_15123 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-36
Identity = 93/110 (84.55%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVAAA+SSRKRAGEKISD RAKR +
Sbjct: 43  LHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKR-T 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYRNQ 111
           AQV S KGASNSE PSKD  NLTVERLRALLKARGLS KGKKASI Y NQ
Sbjct: 103 AQVSSGKGASNSETPSKDFQNLTVERLRALLKARGLSLKGKKASILYCNQ 151

[Close]

BLAST of MS001851 vs. NCBI nr
Match: XP_008464442.1 (PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-34
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A 
Sbjct: 43  LHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKA- 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +GKK  +  R
Sbjct: 103 AQVCSSKGASNNETPSKDLQNLTVERLRALLKAKGLSLRGKKDELIAR 149

[Close]

BLAST of MS001851 vs. NCBI nr
Match: XP_038878488.1 (uncharacterized protein LOC120070711 [Benincasa hispida] >XP_038878489.1 uncharacterized protein LOC120070711 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 7.4e-34
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKN+SSKDGKG AAA+SSRKRAGEKISDSRAKRA 
Sbjct: 44  LHDTSPPEDQEIKTNQQNILIRSLMLKNTSSKDGKGAAAAESSRKRAGEKISDSRAKRA- 103

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCS KGASN+E PSKDL NLTVERLRALLKA+GLS +GKK  +  R
Sbjct: 104 AQVCSIKGASNNETPSKDLQNLTVERLRALLKAKGLSLRGKKDELIAR 150

[Close]

BLAST of MS001851 vs. ExPASy TrEMBL
Match: A0A6J1C1R1 (DET1- and DDB1-associated protein 1 OS=Momordica charantia OX=3673 GN=LOC111007476 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.0e-41
Identity = 98/108 (90.74%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS
Sbjct: 43  LHDTSPPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCSTKGASNSEVPSK LYNLTVERLRALLKARGLSPKGKK  +  R
Sbjct: 103 AQVCSTKGASNSEVPSKHLYNLTVERLRALLKARGLSPKGKKDELISR 150

[Close]

BLAST of MS001851 vs. ExPASy TrEMBL
Match: A0A5A7UW19 (DET1- and DDB1-associated protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00580 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.3e-39
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A 
Sbjct: 43  LHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKA- 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYRNQIC 113
           AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +GKKASI YRNQ C
Sbjct: 103 AQVCSSKGASNNETPSKDLQNLTVERLRALLKAKGLSLRGKKASIFYRNQSC 153

[Close]

BLAST of MS001851 vs. ExPASy TrEMBL
Match: A0A1S3CLX1 (DET1- and DDB1-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA A+SSRKRAGEKISDSRAK+A 
Sbjct: 43  LHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKA- 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCS+KGASN+E PSKDL NLTVERLRALLKA+GLS +GKK  +  R
Sbjct: 103 AQVCSSKGASNNETPSKDLQNLTVERLRALLKAKGLSLRGKKDELIAR 149

[Close]

BLAST of MS001851 vs. ExPASy TrEMBL
Match: A0A0A0LNX7 (DET1- and DDB1-associated protein 1 OS=Cucumis sativus OX=3659 GN=Csa_1G002080 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVA  +SSRKRAGEKISDSRAK+A 
Sbjct: 43  LHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKA- 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQVCS+KGASN+E P+KDL NLTVERLRALLKA+GLS +GKK  +  R
Sbjct: 103 AQVCSSKGASNNETPTKDLQNLTVERLRALLKAKGLSLRGKKDELIAR 149

[Close]

BLAST of MS001851 vs. ExPASy TrEMBL
Match: A0A6J1KMN1 (DET1- and DDB1-associated protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111495549 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   LHSILYPEDQDIKTNQQNILIRSLMLKNSSSKDGKGVAAADSSRKRAGEKISDSRAKRAS 60
           LH    PEDQ+IKTNQQNILIRSLMLKNSSSKDGKGVAAA+SSRKRAGEKISD RAKR +
Sbjct: 43  LHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKR-T 102

Query: 61  AQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
           AQV S KGASNSE PSKD  NLTVERLRALLKARGLS KGKK  +  R
Sbjct: 103 AQVSSGKGASNSETPSKDFQNLTVERLRALLKARGLSLKGKKDELIAR 149

[Close]

BLAST of MS001851 vs. TAIR 10
Match: AT5G63460.1 (SAP domain-containing protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 2   HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAK 61
           H    PE Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+ 
Sbjct: 48  HDTSPPEGQLIKTNQQNILIRSLLLKKQKGESSSKDSKG-TAEDGPKKRAANRALDDRSS 107

Query: 62  RASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
              A   S +  S+S    +D  +LTVE+LRA+LK +GL  KG+K  +  R
Sbjct: 108 AKRAANASRQEGSSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIAR 157

[Close]

BLAST of MS001851 vs. TAIR 10
Match: AT5G63460.2 (SAP domain-containing protein )

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-15
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 2   HSILYPEDQDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAK 61
           H    PE Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+ 
Sbjct: 48  HDTSPPEGQLIKTNQQNILIRSLLLKKQKGESSSKDSKG-TAEDGPKKRAANRALDDRSS 107

Query: 62  RASAQVCSTKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
              A   S +G S+S    +D  +LTVE+LRA+LK +GL  KG+K  +  R
Sbjct: 108 AKRAANASRQG-SSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIAR 156

[Close]

BLAST of MS001851 vs. TAIR 10
Match: AT5G63460.4 (SAP domain-containing protein )

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-14
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 10  QDIKTNQQNILIRSLMLK----NSSSKDGKGVAAADSSRKRAGEKISDSRAKRASAQVCS 69
           Q IKTNQQNILIRSL+LK     SSSKD KG  A D  +KRA  +  D R+    A   S
Sbjct: 68  QLIKTNQQNILIRSLLLKKQKGESSSKDSKG-TAEDGPKKRAANRALDDRSSAKRAANAS 127

Query: 70  TKGASNSEVPSKDLYNLTVERLRALLKARGLSPKGKKASICYR 109
            +  S+S    +D  +LTVE+LRA+LK +GL  KG+K  +  R
Sbjct: 128 RQEGSSSRTGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIAR 169

The following BLAST results are available for this feature:

BLAST of MS001851 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135549.1	8.2e-41	90.74	uncharacterized protein LOC111007476 [Momordica charantia]	[more]
KAA0057775.1	1.3e-38	83.93	apoptotic chromatin condensation inducer in the nucleus [Cucumis melo var. makuw...	[more]
KAG7021398.1	6.1e-36	84.55	hypothetical protein SDJN02_15123 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008464442.1	3.3e-34	80.56	PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo]	[more]
XP_038878488.1	7.4e-34	80.56	uncharacterized protein LOC120070711 [Benincasa hispida] >XP_038878489.1 unchara...	[more]

BLAST of MS001851 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1R1	4.0e-41	90.74	DET1- and DDB1-associated protein 1 OS=Momordica charantia OX=3673 GN=LOC1110074...	[more]
A0A5A7UW19	6.3e-39	83.93	DET1- and DDB1-associated protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CLX1	1.6e-34	80.56	DET1- and DDB1-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103502327 PE=3...	[more]
A0A0A0LNX7	1.0e-33	78.70	DET1- and DDB1-associated protein 1 OS=Cucumis sativus OX=3659 GN=Csa_1G002080 P...	[more]
A0A6J1KMN1	2.3e-33	81.48	DET1- and DDB1-associated protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111495549 ...	[more]

BLAST of MS001851 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63460.1	2.8e-15	47.75	SAP domain-containing protein	[more]
AT5G63460.2	6.3e-15	48.65	SAP domain-containing protein	[more]
AT5G63460.4	9.1e-14	48.54	SAP domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036361	SAP domain superfamily	GENE3D	1.10.720.30	SAP domain	coord: 56..108 e-value: 3.9E-6 score: 28.3
IPR036361	SAP domain superfamily	SUPERFAMILY	68906	SAP domain	coord: 74..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..56
None	No IPR available	PANTHER	PTHR31879:SF2	DET1- AND DDB1-ASSOCIATED PROTEIN 1	coord: 7..106
IPR033575	DET1- and DDB1-associated protein 1	PANTHER	PTHR31879	DET1- AND DDB1-ASSOCIATED PROTEIN 1	coord: 7..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001851.1	MS001851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process