MS001839 (gene) Bitter gourd (TR) v1

Overview


Name	MS001839
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold30: 317707 .. 317853 (+)
RNA-Seq Expression	MS001839
Synteny	MS001839

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGAGGGGTGACAAAATTAGCTTCTGGAATGATTTGTGGGCAATGGACTCTCCCTTAGCAAAGGCCTTTCCCAAAATTTTTGCCTTGGCCTCGAACAAAAATATTTGGGTCTGCCAAGCTTGGTCCAATGCAACAAGTTCGTGG

mRNA sequence

ATTGGGAGGGGTGACAAAATTAGCTTCTGGAATGATTTGTGGGCAATGGACTCTCCCTTAGCAAAGGCCTTTCCCAAAATTTTTGCCTTGGCCTCGAACAAAAATATTTGGGTCTGCCAAGCTTGGTCCAATGCAACAAGTTCGTGG

Coding sequence (CDS)

ATTGGGAGGGGTGACAAAATTAGCTTCTGGAATGATTTGTGGGCAATGGACTCTCCCTTAGCAAAGGCCTTTCCCAAAATTTTTGCCTTGGCCTCGAACAAAAATATTTGGGTCTGCCAAGCTTGGTCCAATGCAACAAGTTCGTGG

Protein sequence

IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAWSNATSSW

Homology

[Close]

BLAST of MS001839 vs. NCBI nr
Match: CAN82456.1 (hypothetical protein VITISV_010028 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 9.7e-07
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1    IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
            +G G K+ FW DLW  D  L  AFP +F LA NKN WVC AW
Sbjct: 1599 VGNGRKVKFWKDLWCEDQALEDAFPNLFRLAVNKNQWVCDAW 1640

[Close]

BLAST of MS001839 vs. NCBI nr
Match: RVW31723.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 91  VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAVNKDQWVCDAW 132

[Close]

BLAST of MS001839 vs. NCBI nr
Match: RVW30576.1 (hypothetical protein CK203_086033 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 369 VGNGRKVKFWKDLWCEDQALKDAFPNLFKLAVNKDQWVCDAW 410

[Close]

BLAST of MS001839 vs. NCBI nr
Match: CAN72120.1 (hypothetical protein VITISV_031908 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 81  VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAINKDQWVCDAW 122

[Close]

BLAST of MS001839 vs. NCBI nr
Match: RVW83382.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 583 VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAVNKDQWVCDAW 624

[Close]

BLAST of MS001839 vs. ExPASy TrEMBL
Match: A5AQB4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010028 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1    IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
            +G G K+ FW DLW  D  L  AFP +F LA NKN WVC AW
Sbjct: 1599 VGNGRKVKFWKDLWCEDQALEDAFPNLFRLAVNKNQWVCDAW 1640

[Close]

BLAST of MS001839 vs. ExPASy TrEMBL
Match: A0A438D8E9 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_322 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 91  VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAVNKDQWVCDAW 132

[Close]

BLAST of MS001839 vs. ExPASy TrEMBL
Match: A0A438HFZ0 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Vitis vinifera OX=29760 GN=MEE29_2 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 583 VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAVNKDQWVCDAW 624

[Close]

BLAST of MS001839 vs. ExPASy TrEMBL
Match: A0A438F691 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075213 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1  IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
          +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 20 VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAVNKDQWVCNAW 61

[Close]

BLAST of MS001839 vs. ExPASy TrEMBL
Match: A0A438G615 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_063071 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   IGRGDKISFWNDLWAMDSPLAKAFPKIFALASNKNIWVCQAW 43
           +G G K+ FW DLW  D  L  AFP +F LA NK+ WVC AW
Sbjct: 81  VGNGRKVKFWKDLWCEDQALKDAFPNLFRLAINKDQWVCDAW 122

The following BLAST results are available for this feature:

BLAST of MS001839 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN82456.1	9.7e-07	57.14	hypothetical protein VITISV_010028 [Vitis vinifera]	[more]
RVW31723.1	3.7e-06	54.76	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW30576.1	3.7e-06	54.76	hypothetical protein CK203_086033 [Vitis vinifera]	[more]
CAN72120.1	3.7e-06	54.76	hypothetical protein VITISV_031908 [Vitis vinifera]	[more]
RVW83382.1	3.7e-06	54.76	putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Vitis vinife...	[more]

BLAST of MS001839 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AQB4	4.7e-07	57.14	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010028 PE=4 SV=1	[more]
A0A438D8E9	1.8e-06	54.76	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_322 P...	[more]
A0A438HFZ0	1.8e-06	54.76	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Vitis vini...	[more]
A0A438F691	1.8e-06	54.76	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075213 PE=4 SV=1	[more]
A0A438G615	1.8e-06	54.76	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_063071 PE=4 SV=1	[more]

BLAST of MS001839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001839.1	MS001839.1	mRNA