MS001837 (gene) Bitter gourd (TR) v1

Overview


Name	MS001837
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Location	scaffold30: 313545 .. 315033 (-)
RNA-Seq Expression	MS001837
Synteny	MS001837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGTAAATTATCAGACTGATCTTTCAACTCTCCGTCTAAGTTCATTGGCCAATGTTTCTCATTTTTCATTTGGTTGTTATTTGGAAAACTCGAGACCGATTCAGAGATATTGAGTTTCCCCACAGTACAAAATGCTTTGCTGAGAACACATGAACTTTTCATATTCAATTTCAGACGAATGCATAAATTTTTTTTTATGTTAATAAGTATTTCTTGCTACAATTTGCACATACTACTATCGAGCTGGTATTCATTTTCATAACTGCCGATTGATACGTGGACCAACTCCATGTACTACGAATTTGATATATTGCTCACTGGATTGACTTGGTGTTCACCACTGCTGATTAAGCGATTTTAAGCAGTCTCTCGTGTTTTTTTGATAGGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGTATTTCATTCTGTCTTCCGCTTGTAAATTCTAGTCAATAGTTTATTTTTTCTTAAGGCTTTCAGGATGTGTCCGAATACTTCCTTTCACTGAATTGCACCAGTTAAAATTTTTAGGCTAAGATTTCGTGAAGGAACTAATACTTCTGGAAATTATTTACTTTTTGGAAACTTTGTAGTCTACTTTCTACTTTCAACGCATGATGCATAGCTATTTATCGATGTATCTGTAATAAGATTTTCTGAAGTGTCTACAAATATTGATGAAACTGTGAAAATTTTAAAGATTTGAGAAACAAGAGTTCTTTTCGTGTTGTTGTATCACCGTCTTAATTTAAACAAAGATTTTGAAACTAAATAGACAATATTGAAAATCAAATATTAAAACTAACGATATTTTGTAGATAATATACTTCTTCATTCGTCTCATTTTTATTCTTTGGTAAGGTCCTCGAGCGATATTTTATTCTTCCTTCAACTGCTTTCTTATAAGGATCCGTGTATCTGTGGTCTCTTTGCAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTT

mRNA sequence

ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTT

Coding sequence (CDS)

ATGGAAGATAAACCCACTAGTATTTTGGCACTTCCCCAGACTACACAAGAGCTTGCAATTGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGATGAGCTCTGCAATCCCACGTTATGGTCCACCACTTCTTCAACGGCTACTTCTGCTTTATCAATTGCAAGCCCAAATGGTCCATCTCCGCATTCCACAAATGGAGTTGTAAACGGCGACGCGAGTTCTGAAAGCACTAACCATCACGCTGACACCAGCAGTGGCGGAGGCACCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAATAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAGCTCTCAGAATGCAAAAGCATATGAATCGGGTACGAGTGGTCATGCATCCCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTGTAATCTTAGAAAGGAACTTGTCAATAAGAACTTGCATCTCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATATATCTACATGGCAAAGTCCTTGTTCAGTT

Protein sequence

MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQSPCSV

Homology

[Close]

BLAST of MS001837 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60

Query: 61  LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
           LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR
Sbjct: 61  LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120

Query: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
           AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR
Sbjct: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180

Query: 181 DLVADISTWQSPCSV 196
           DLVADISTWQSPCSV
Sbjct: 181 DLVADISTWQSPCSV 195

[Close]

BLAST of MS001837 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.3 bits (843), Expect = 2.2e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
           ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
           TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
              L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.4e-85
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
              L+IASP+GPS HS NGVVNGDASSEST+HH D+S GGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 318.2 bits (814), Expect = 5.1e-83
Identity = 172/198 (86.87%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS---TA 60
           ME+KPT++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS   TA
Sbjct: 2   MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61

Query: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
           TS L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 62  TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ A AYESGTSG  SPADQSEIDKLEQHL +LRKELV KNLH+KLLID
Sbjct: 122 ALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLID 181

Query: 181 QLRDLVADISTWQSPCSV 196
           QLRDLVAD+STWQSPCSV
Sbjct: 182 QLRDLVADVSTWQSPCSV 197

[Close]

BLAST of MS001837 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 103/185 (55.68%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 14  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHS 73
           TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA +    NG     
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWS-TSATPSSAATTTGSNG----- 72

Query: 74  TNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARVRYNNSVLALRAILAAIPSSQ 133
            + +V+ DA++ + T+HH++++ GGG G  G   L+EA +RY NSV +LRA+LAAIP+SQ
Sbjct: 73  -SALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 NAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQ 193
            AKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+ADISTWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 196
           SPCSV
Sbjct: 193 SPCSV 189

[Close]

BLAST of MS001837 vs. ExPASy TrEMBL
Match: A0A6J1C121 (mediator of RNA polymerase II transcription subunit 30 OS=Momordica charantia OX=3673 GN=LOC111007061 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.5e-99
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60

Query: 61  LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120
           LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR
Sbjct: 61  LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120

Query: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180
           AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR
Sbjct: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180

Query: 181 DLVADISTWQSPCSV 196
           DLVADISTWQSPCSV
Sbjct: 181 DLVADISTWQSPCSV 195

[Close]

BLAST of MS001837 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
           ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
           TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA--- 60
           ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
           TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
              L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
              L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
           ALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADISTWQSPCSV 196
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of MS001837 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 103/185 (55.68%), Postives = 138/185 (74.59%), Query Frame = 0


Query: 14  TTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSALSIASPNGPSPHS 73
           TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWS TS+T +SA +    NG     
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWS-TSATPSSAATTTGSNG----- 72

Query: 74  TNGVVNGDASS-ESTNHHADTSSGGGTGSGG--ALEEARVRYNNSVLALRAILAAIPSSQ 133
            + +V+ DA++ + T+HH++++ GGG G  G   L+EA +RY NSV +LRA+LAAIP+SQ
Sbjct: 73  -SALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 NAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLRDLVADISTWQ 193
            AKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+ADISTWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 196
           SPCSV
Sbjct: 193 SPCSV 189

The following BLAST results are available for this feature:

BLAST of MS001837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134927.1	1.1e-98	100.00	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]
XP_022921424.1	2.2e-86	87.88	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_008464424.1	1.1e-85	87.88	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]...	[more]
XP_004138044.1	2.4e-85	87.37	mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634...	[more]
XP_038879540.1	5.1e-83	86.87	mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]	[more]

BLAST of MS001837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV4	1.8e-43	55.68	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of MS001837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C121	5.5e-99	100.00	mediator of RNA polymerase II transcription subunit 30 OS=Momordica charantia OX...	[more]
A0A6J1JFZ2	1.1e-86	87.88	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E0F5	1.1e-86	87.88	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=...	[more]
A0A5A7USU3	5.3e-86	87.88	Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku...	[more]
A0A1S3CMZ7	5.3e-86	87.88	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]

BLAST of MS001837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63480.1	1.3e-44	55.68	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..103
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 9..195
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 9..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001837.1	MS001837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex