MS001834 (gene) Bitter gourd (TR) v1

Overview


Name	MS001834
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF 3339)
Location	scaffold30: 300557 .. 300763 (-)
RNA-Seq Expression	MS001834
Synteny	MS001834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCGGTTGTGATAGCGGTGGTGCTGTTCGTGCTGCTCACCCCAGGGCTGCTGTTTCAGATCCCAGGCAGAGGCAAGGTGGTGGAGTTCGGGAGCATGCATACCAGCGGAGCTGCCATTTTAGTCCACGCCGTCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACCGGC

mRNA sequence

ATGGCAGATTGGGGGCCGGTTGTGATAGCGGTGGTGCTGTTCGTGCTGCTCACCCCAGGGCTGCTGTTTCAGATCCCAGGCAGAGGCAAGGTGGTGGAGTTCGGGAGCATGCATACCAGCGGAGCTGCCATTTTAGTCCACGCCGTCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACCGGC

Coding sequence (CDS)

ATGGCAGATTGGGGGCCGGTTGTGATAGCGGTGGTGCTGTTCGTGCTGCTCACCCCAGGGCTGCTGTTTCAGATCCCAGGCAGAGGCAAGGTGGTGGAGTTCGGGAGCATGCATACCAGCGGAGCTGCCATTTTAGTCCACGCCGTCATCTTCTTCGGCCTCATCACCATCTTCCTCATCGCCATCGGCGTTCACATCTACACCGGC

Protein sequence

MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLIAIGVHIYTG

Homology

[Close]

BLAST of MS001834 vs. NCBI nr
Match: XP_022134841.1 (uncharacterized protein LOC111007014 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. NCBI nr
Match: KAF7833994.1 (putative transmembrane protein [Senna tora])

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 64/69 (92.75%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQIPGRGKVVEFG+MHTSGA+ILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGKVVEFGNMHTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. NCBI nr
Match: XP_028771935.1 (uncharacterized protein LOC114729134 isoform X2 [Prosopis alba] >XP_028785701.1 uncharacterized protein LOC114741600 [Prosopis alba])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQ+PGRG++VEFGSMHTSG +ILVHA++FFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRIVEFGSMHTSGVSILVHAILFFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. NCBI nr
Match: XP_028771934.1 (uncharacterized protein LOC114729134 isoform X1 [Prosopis alba])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
           MADWGPVVIAVVLFVLL+PGLLFQ+PGRG++VEFGSMHTSG +ILVHA++FFGLITIFLI
Sbjct: 74  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRIVEFGSMHTSGVSILVHAILFFGLITIFLI 133

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 134 AIGVHIYTG 142

[Close]

BLAST of MS001834 vs. NCBI nr
Match: XP_007225875.1 (uncharacterized protein LOC18790196 [Prunus persica] >ONI29947.1 hypothetical protein PRUPE_1G223800 [Prunus persica] >CAB4290433.1 unnamed protein product [Prunus armeniaca] >CAB4294614.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQ+PGRG+VVEFGSMHTSG +ILVH +IFFGL+TIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRVVEFGSMHTSGISILVHTIIFFGLLTIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. ExPASy TrEMBL
Match: A0A6J1BYW8 (uncharacterized protein LOC111007014 OS=Momordica charantia OX=3673 GN=LOC111007014 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. ExPASy TrEMBL
Match: M5XMC9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G223800 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQ+PGRG+VVEFGSMHTSG +ILVH +IFFGL+TIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRVVEFGSMHTSGISILVHTIIFFGLLTIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. ExPASy TrEMBL
Match: A0A6J5VQ87 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50440 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQ+PGRG+VVEFGSMHTSG +ILVH +IFFGL+TIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRVVEFGSMHTSGISILVHTIIFFGLLTIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. ExPASy TrEMBL
Match: A0A4P1R3A0 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_27514 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQIPGRG+VVEFG+M TSGA+ILVHA+I+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MS001834 vs. ExPASy TrEMBL
Match: A0A314UVR7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08016 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVVIAVVLFVLL+PGLLFQ+PGRG+VVEFGSMHTSG +ILVH +IFFGL+TIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRGRVVEFGSMHTSGISILVHTIIFFGLLTIFLI 60

Query: 61 AIGVHIYTG 70
          A+GVHIYTG
Sbjct: 61 AVGVHIYTG 69

[Close]

BLAST of MS001834 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPVV+AV+LFVLLTPGLLFQIP RG+VVEFG+M TSGA+ILVH +IFFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of MS001834 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-25
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          MADWGPV+IAV+LFV+L+PGLLFQIP  G+VVEFG+M TSGA+ILVHA+IFFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of MS001834 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 39/69 (56.52%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLI 60
          M+DWGPV++ V+LFV+LTPGLLFQ+PGR K VEFG+  TS  +++VH++++F L+ +FL+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIGVHIYTG 70
          A+ +HIY G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of MS001834 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-19
Identity = 42/66 (63.64%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2  ADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLIA 61
          ADWGPV++AV LF+LL+PGLLFQ+P R +V+EFG+M TSG +ILVHA+I+F ++TI +IA
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of MS001834 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18
Identity = 43/66 (65.15%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 2  ADWGPVVIAVVLFVLLTPGLLFQIPGRGKVVEFGSMHTSGAAILVHAVIFFGLITIFLIA 61
          ADWGPV +AVVLFV+L+PGLLFQ+P R +V+E G+M TSG +ILVHA++FF +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

The following BLAST results are available for this feature:

BLAST of MS001834 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134841.1	1.1e-27	100.00	uncharacterized protein LOC111007014 [Momordica charantia]	[more]
KAF7833994.1	4.5e-26	92.75	putative transmembrane protein [Senna tora]	[more]
XP_028771935.1	2.2e-25	88.41	uncharacterized protein LOC114729134 isoform X2 [Prosopis alba] >XP_028785701.1 ...	[more]
XP_028771934.1	2.2e-25	88.41	uncharacterized protein LOC114729134 isoform X1 [Prosopis alba]	[more]
XP_007225875.1	6.5e-25	88.41	uncharacterized protein LOC18790196 [Prunus persica] >ONI29947.1 hypothetical pr...	[more]

BLAST of MS001834 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYW8	5.2e-28	100.00	uncharacterized protein LOC111007014 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
M5XMC9	3.1e-25	88.41	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G223800 PE=4 SV=1	[more]
A0A6J5VQ87	3.1e-25	88.41	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50440 PE=4 S...	[more]
A0A4P1R3A0	4.1e-25	89.86	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_27514 PE=4 S...	[more]
A0A314UVR7	4.1e-25	86.96	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_080...	[more]

BLAST of MS001834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	2.2e-26	82.61	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	4.1e-25	79.71	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	1.5e-19	56.52	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	4.3e-19	63.64	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	1.7e-18	65.15	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 1.2E-35 score: 121.5
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF40	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001834.1	MS001834.1	mRNA