MS001821 (gene) Bitter gourd (TR) v1

Overview


Name	MS001821
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Location	scaffold30: 233913 .. 234224 (+)
RNA-Seq Expression	MS001821
Synteny	MS001821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCAAGCCGCCTGGTCTGGACTCTTCAATGTCTTCAATGTTAGCTTCTGCCTCCTGAAATCCATCGATGATTGCCTCCTGCAAACTCTTATGGGAGGGTGTTTCACGTACAGAGCTAAAAGTCTATGGAACTATACCACTGTGGCTACTCTTTGGAACTTATGGTTAGAACGAAATCAGAGGACGTTTAAGAATGAATGTCTTAATTGTGATAGCTTTTGGAATGGTGTTCAACTTACAGCCTCTAGGTGGTGTTTTTCTTTGAACAATTCTTTTTGTAACTACACCCTCACAGTGATCCTCCAAAATTGG

mRNA sequence

GCCCAAGCCGCCTGGTCTGGACTCTTCAATGTCTTCAATGTTAGCTTCTGCCTCCTGAAATCCATCGATGATTGCCTCCTGCAAACTCTTATGGGAGGGTGTTTCACGTACAGAGCTAAAAGTCTATGGAACTATACCACTGTGGCTACTCTTTGGAACTTATGGTTAGAACGAAATCAGAGGACGTTTAAGAATGAATGTCTTAATTGTGATAGCTTTTGGAATGGTGTTCAACTTACAGCCTCTAGGTGGTGTTTTTCTTTGAACAATTCTTTTTGTAACTACACCCTCACAGTGATCCTCCAAAATTGG

Coding sequence (CDS)

GCCCAAGCCGCCTGGTCTGGACTCTTCAATGTCTTCAATGTTAGCTTCTGCCTCCTGAAATCCATCGATGATTGCCTCCTGCAAACTCTTATGGGAGGGTGTTTCACGTACAGAGCTAAAAGTCTATGGAACTATACCACTGTGGCTACTCTTTGGAACTTATGGTTAGAACGAAATCAGAGGACGTTTAAGAATGAATGTCTTAATTGTGATAGCTTTTGGAATGGTGTTCAACTTACAGCCTCTAGGTGGTGTTTTTCTTTGAACAATTCTTTTTGTAACTACACCCTCACAGTGATCCTCCAAAATTGG

Protein sequence

AQAAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW

Homology

[Close]

BLAST of MS001821 vs. NCBI nr
Match: RWR92932.1 (hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-06
Identity = 31/102 (30.39%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 3    AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRT 62
            + W        V +C  + I + + ++ +GGCF    + LW  T  A LW++W ERN R 
Sbjct: 1082 SVWGHFIGRCGVDWCCSEKIAN-VAESWLGGCFVGCGRILWRITLFAILWSIWKERNDRI 1141

Query: 63   FKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
            F+        F + + LT ++W       F N++L  IL NW
Sbjct: 1142 FRGSSSTSAEFISKITLTIAKWALG-RKEFSNFSLHDILINW 1181

[Close]

BLAST of MS001821 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F 
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 65  NECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
           ++        +   L A+ WC SL   F NY++  I  NW
Sbjct: 341 DKARQRAEIMHAADLNAAAWC-SLRKEFVNYSIQDICLNW 379

[Close]

BLAST of MS001821 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F 
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 65  NECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
           ++        +   L A+ WC SL   F NY++  I  NW
Sbjct: 341 DKARQRAEIMHAADLNAAAWC-SLRKEFVNYSIQDICLNW 379

[Close]

BLAST of MS001821 vs. NCBI nr
Match: RVW96981.1 (hypothetical protein CK203_032271 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-05
Identity = 26/82 (31.71%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  LF +  + +   +SI D +     G   + R   LW  T++A +W +W ERN R F+
Sbjct: 174 WHRLFQLVKMDWVPPRSISDMMFINYKGFGASKRGIVLWQNTSIALIWVMWQERNARIFE 233

Query: 65  NECLNCDSFWNGVQLTASRWCF 87
           N+  N ++ W+ V   AS W +
Sbjct: 234 NKARNSENLWDSVHFLASLWAY 255

[Close]

BLAST of MS001821 vs. NCBI nr
Match: RVW36770.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 26/82 (31.71%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  LF +  + +  LKSI D +     G   + R   LW   ++A +W +W ERN R F+
Sbjct: 901 WHRLFQLAKMDWVPLKSISDMMFINYKGFGKSKRGVILWQNASIALIWVVWRERNARIFE 960

Query: 65  NECLNCDSFWNGVQLTASRWCF 87
           ++  N  + W+ +   AS W F
Sbjct: 961 DKARNAGNLWDSIHFLASLWAF 982

[Close]

BLAST of MS001821 vs. ExPASy TrEMBL
Match: A0A3S3R1F6 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02215900 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 31/102 (30.39%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 3    AAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRT 62
            + W        V +C  + I + + ++ +GGCF    + LW  T  A LW++W ERN R 
Sbjct: 1082 SVWGHFIGRCGVDWCCSEKIAN-VAESWLGGCFVGCGRILWRITLFAILWSIWKERNDRI 1141

Query: 63   FKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
            F+        F + + LT ++W       F N++L  IL NW
Sbjct: 1142 FRGSSSTSAEFISKITLTIAKWALG-RKEFSNFSLHDILINW 1181

[Close]

BLAST of MS001821 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F 
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 65  NECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
           ++        +   L A+ WC SL   F NY++  I  NW
Sbjct: 341 DKARQRAEIMHAADLNAAAWC-SLRKEFVNYSIQDICLNW 379

[Close]

BLAST of MS001821 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  +F++FN+ +    S+   ++Q L G       + +W   + A L  +W+ERNQR F 
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 65  NECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
           ++        +   L A+ WC SL   F NY++  I  NW
Sbjct: 341 DKARQRAEIMHAADLNAAAWC-SLRKEFVNYSIQDICLNW 379

[Close]

BLAST of MS001821 vs. ExPASy TrEMBL
Match: A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 28/104 (26.92%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 1    AQAAWSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQ 60
            A + W  L N F + + +  S+D  L+  + G   + R+ SLW  T ++ LW +WLERN 
Sbjct: 1466 ASSLWIMLMNEFQIQWAMPSSVDYMLVSKVGG---SKRSTSLWRTTVLSVLWVVWLERNN 1525

Query: 61   RTFKNECLNCDSFWNGVQLTASRWCFSLNNSFCNYTLTVILQNW 105
            R F+    + ++ W+ ++   + W +   + F N +   ++++W
Sbjct: 1526 RIFEGSESSIETLWDKIKFWTASWVYKTKH-FENISFLDLIRDW 1565

[Close]

BLAST of MS001821 vs. ExPASy TrEMBL
Match: A0A438IJU8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_032271 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 26/82 (31.71%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 5   WSGLFNVFNVSFCLLKSIDDCLLQTLMGGCFTYRAKSLWNYTTVATLWNLWLERNQRTFK 64
           W  LF +  + +   +SI D +     G   + R   LW  T++A +W +W ERN R F+
Sbjct: 174 WHRLFQLVKMDWVPPRSISDMMFINYKGFGASKRGIVLWQNTSIALIWVMWQERNARIFE 233

Query: 65  NECLNCDSFWNGVQLTASRWCF 87
           N+  N ++ W+ V   AS W +
Sbjct: 234 NKARNSENLWDSVHFLASLWAY 255

The following BLAST results are available for this feature:

BLAST of MS001821 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR92932.1	4.6e-06	30.39	hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae]	[more]
KAA0035739.1	1.0e-05	30.00	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]
TYK21876.1	1.0e-05	30.00	hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]	[more]
RVW96981.1	3.0e-05	31.71	hypothetical protein CK203_032271 [Vitis vinifera]	[more]
RVW36770.1	5.1e-05	31.71	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of MS001821 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3S3R1F6	2.2e-06	30.39	Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_...	[more]
A0A5A7T2Y0	4.9e-06	30.00	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	4.9e-06	30.00	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A803QEA6	1.1e-05	26.92	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438IJU8	1.4e-05	31.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_032271 PE=4 SV=1	[more]

BLAST of MS001821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001821.1	MS001821.1	mRNA