MS001806 (gene) Bitter gourd (TR) v1

Overview


Name	MS001806
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 167378 .. 167533 (+)
RNA-Seq Expression	MS001806
Synteny	MS001806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTACTTGAAAGCAGGGGAGTAGCTGTATCGGGCGTCCAAAGGGATGCCAAAAACGATGACGGATTGCTTGGCGGTGAGCATGAGCCAGGCGGCGGCCAATGTGGAGGCAATCACCAAGCCTCTCAGGATGGTCTGGGAACAGAGGTGGAGATT

mRNA sequence

AAGTTACTTGAAAGCAGGGGAGTAGCTGTATCGGGCGTCCAAAGGGATGCCAAAAACGATGACGGATTGCTTGGCGGTGAGCATGAGCCAGGCGGCGGCCAATGTGGAGGCAATCACCAAGCCTCTCAGGATGGTCTGGGAACAGAGGTGGAGATT

Coding sequence (CDS)

AAGTTACTTGAAAGCAGGGGAGTAGCTGTATCGGGCGTCCAAAGGGATGCCAAAAACGATGACGGATTGCTTGGCGGTGAGCATGAGCCAGGCGGCGGCCAATGTGGAGGCAATCACCAAGCCTCTCAGGATGGTCTGGGAACAGAGGTGGAGATT

Protein sequence

KLLESRGVAVSGVQRDAKNDDGLLGGEHEPGGGQCGGNHQASQDGLGTEVEI

Homology

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BLAST of MS001806 vs. ExPASy TrEMBL
Match: A0A0A0LNG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000730 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   KLLESRGVAVSGVQRDAKNDDGLLGGEHEPGGGQCGGNHQASQDGLG-TEVEI 53
           K LESRGV VS V+RD KN++GLLGGE +PG  QCGGN Q S+D LG T++E+
Sbjct: 97  KELESRGVVVSSVKRDTKNENGLLGGEDDPGSSQCGGNCQNSEDNLGITKMEV 149

The following BLAST results are available for this feature:

BLAST of MS001806 vs.


Match Name	E-value	Identity	Description

BLAST of MS001806 vs.


Match Name	E-value	Identity	Description

BLAST of MS001806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG7	2.6e-08	64.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000730 PE=4 SV=1	[more]

BLAST of MS001806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001806.1	MS001806.1	mRNA