MS001798 (gene) Bitter gourd (TR) v1

Overview


Name	MS001798
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Rubredoxin-like domain-containing protein
Location	scaffold30: 140911 .. 141812 (+)
RNA-Seq Expression	MS001798
Synteny	MS001798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAGACGGCGGCGCTGATCGGCACTCCAACTCCAACCGCTTGTATCTGAAATCGTCCTTCTTCTCTCCTTTACGCACTCCCTCCAACTCCAAGATTCCTCCTTTAGGGAGCCAAAAATCTGGTAAAATTTCAGCTGCACCCAAGTTCTCCATCTCCATGCGCGTCGCCTCCAAGCAAGCCTATATCTGTCGTGATTGCGGGTATCACTTTCTATCTCTCCCCCACTTTCCATCTCCATCGCTATAATGAAATGAACCTATCTTTTTTCTTTTTCTTTTTCTTTTTCTAATTAGGTACATTTACAATGATCGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGGTAATTTCCTTCCCTATATCTTGTTTGCATTCATAATTCATGCCATCTTCTTTCCACATTTTTCATTTTATCTAATCTTTGAGTCTCGAGTTAGAATCAATGTCAACAATTCCCTTCCCTATTCATGTTTTTGTTCAACAGCATAACTTCCTGCTAGATATCTCCCAAGAAAAAAGTAGAGAAAGAACCAACTTCGTATCATTTACTTTGTGTTCCAAAGAAATTGGAAACCTATTCAATTATAATGTAAATGATCATGCCTTGCAGTCTGTGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCCGTGACAAAAAATGTTAACGAACTCGATGTGAGGAAGGCGAGGAAGGCGCAGATTCAGAGAGATGAAGCTGTTGGGTAAGACGGAAAATGGACTTTATATATTATCACAGTTTTTAATGATTATTTATCGAGTCTGATTGATATCTGGTAAAACGGTATAGGAATGTGCTGCCTATTGCTGCTGCAGTTGGAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAGCGTGTAT

mRNA sequence

AAGGAAGACGGCGGCGCTGATCGGCACTCCAACTCCAACCGCTTGTATCTGAAATCGTCCTTCTTCTCTCCTTTACGCACTCCCTCCAACTCCAAGATTCCTCCTTTAGGGAGCCAAAAATCTGGTAAAATTTCAGCTGCACCCAAGTTCTCCATCTCCATGCGCGTCGCCTCCAAGCAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAATGATCGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGTCTGTGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCCGTGACAAAAAATGTTAACGAACTCGATGTGAGGAAGGCGAGGAAGGCGCAGATTCAGAGAGATGAAGCTGTTGGGAATGTGCTGCCTATTGCTGCTGCAGTTGGAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAGCGTGTAT

Coding sequence (CDS)

AAGGAAGACGGCGGCGCTGATCGGCACTCCAACTCCAACCGCTTGTATCTGAAATCGTCCTTCTTCTCTCCTTTACGCACTCCCTCCAACTCCAAGATTCCTCCTTTAGGGAGCCAAAAATCTGGTAAAATTTCAGCTGCACCCAAGTTCTCCATCTCCATGCGCGTCGCCTCCAAGCAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAATGATCGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGTCTGTGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCCGTGACAAAAAATGTTAACGAACTCGATGTGAGGAAGGCGAGGAAGGCGCAGATTCAGAGAGATGAAGCTGTTGGGAATGTGCTGCCTATTGCTGCTGCAGTTGGAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAGCGTGTAT

Protein sequence

KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY

Homology

[Close]

BLAST of MS001798 vs. NCBI nr
Match: XP_022134987.1 (uncharacterized protein LOC111007102 [Momordica charantia])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKI+AAPKFSISMRVASKQ
Sbjct: 59  KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKIAAAPKFSISMRVASKQ 118

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI
Sbjct: 119 AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 178

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY
Sbjct: 179 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 210

[Close]

BLAST of MS001798 vs. NCBI nr
Match: XP_038880712.1 (uncharacterized protein LOC120072320 isoform X1 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 8.3e-57
Identity = 125/157 (79.62%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   KEDGGADRH-----SNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMR 60
           KEDGGADR+     S SNRL LKSSF SPLR     KIP   +Q S   +AAPKF  SMR
Sbjct: 20  KEDGGADRNSMFSGSTSNRLSLKSSFISPLR-----KIP---TQTSAAAAAAPKF--SMR 79

Query: 61  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKA 120
           VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKN NE DVRKA
Sbjct: 80  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDVRKA 139

Query: 121 RKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           RKA+IQ+DEA+G VLPIAAAVGIVALVGLYLYLNSV+
Sbjct: 140 RKAEIQKDEAIGKVLPIAAAVGIVALVGLYLYLNSVF 166

[Close]

BLAST of MS001798 vs. NCBI nr
Match: XP_023531329.1 (uncharacterized protein LOC111793604 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           +EDGGADRHS+   L LKSSFFSPLR      IP L  Q S  ++AAPK  +SMRVASKQ
Sbjct: 23  QEDGGADRHSSF--LSLKSSFFSPLR-----NIPSLRKQNSA-VAAAPK--VSMRVASKQ 82

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKN NE D RKARKAQI
Sbjct: 83  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQI 142

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           Q+DEA+G VLPIAAAVGIVALVGLYLYLN+ +
Sbjct: 143 QKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

[Close]

BLAST of MS001798 vs. NCBI nr
Match: XP_022927654.1 (uncharacterized protein LOC111434474 [Cucurbita moschata] >XP_022974453.1 uncharacterized protein LOC111473110 [Cucurbita maxima] >KAG7021371.1 rub [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 4.6e-55
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           +EDGGADRHS+   L LKSSFFSPLR      IP L  Q S  ++AAPK  +SMRVASKQ
Sbjct: 23  QEDGGADRHSSF--LSLKSSFFSPLR-----NIPSLRKQNSA-VAAAPK--VSMRVASKQ 82

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYEQSVTKN NE D RKARKAQI
Sbjct: 83  AYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQI 142

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           Q+DEA+G VLPIAAAVGIVALVGLYLYLN+ +
Sbjct: 143 QKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

[Close]

BLAST of MS001798 vs. NCBI nr
Match: XP_004138023.1 (uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KGN63440.1 hypothetical protein Csa_013438 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 6.0e-55
Identity = 120/157 (76.43%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 1   KEDGGADRH-----SNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMR 60
           +EDGG DR+     S SNRL LKSSF SPLR     KIP L  Q S   +A+PKF  SMR
Sbjct: 23  QEDGGTDRNSMFLDSASNRLSLKSSFISPLR-----KIPSLRKQNSVVAAASPKF--SMR 82

Query: 61  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKA 120
           VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQ+V+KN NE DVRKA
Sbjct: 83  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKNDNEFDVRKA 142

Query: 121 RKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           RKAQIQ+DEA+G VLPIAAA+GIVALVGLYLYLNS +
Sbjct: 143 RKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of MS001798 vs. ExPASy Swiss-Prot
Match: P04170 (Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) OX=525146 GN=rd1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 60 QAYICRDCGYIY----NDRTPFDKLPDKYFCPVCGAPKRRFRP 99
          Q Y+C  CGY Y    +D  PFD+LPD + CPVCG  K +F P
Sbjct: 2  QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44

[Close]

BLAST of MS001798 vs. ExPASy Swiss-Prot
Match: O26258 (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.1e-06
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0


Query: 51  SISMRVASKQAYICRDCGYIYNDR-----------TPFDKLPDKYFCPVCGAPKRRFRPY 101
           +I   V++ + Y CR CGYIY+             TPF+ LP+ + CP CGA K+ F+P 
Sbjct: 3   AIKSEVSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKPL 62

[Close]

BLAST of MS001798 vs. ExPASy Swiss-Prot
Match: P24297 (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rub PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 62  YICRDCGYIYND-----------RTPFDKLPDKYFCPVCGAPKRRFRPYE 101
           ++C+ CGYIY++            T F++LPD + CP+CGAPK  F   E
Sbjct: 4   WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53

[Close]

BLAST of MS001798 vs. ExPASy Swiss-Prot
Match: P58992 (Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=rub1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 61  AYICRDCGYIYNDR-----------TPFDKLPDKYFCPVCGAPKRRFRPY 100
           +++C +CGYIY+              PFDKLPD + CPVC  PK +F  +
Sbjct: 16  SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65

[Close]

BLAST of MS001798 vs. ExPASy Swiss-Prot
Match: Q9AL94 (Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=rd PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-04
Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 0


Query: 62  YICRDCGYIY-----------NDRTPFDKLPDKYFCPVCGAPKRRFRPYEQ 102
           Y+C  CGYIY           N  T F+ +PD + CP+CG  K +F P E+
Sbjct: 4   YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFEPSEE 54

[Close]

BLAST of MS001798 vs. ExPASy TrEMBL
Match: A0A6J1C1D8 (uncharacterized protein LOC111007102 OS=Momordica charantia OX=3673 GN=LOC111007102 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.3e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKI+AAPKFSISMRVASKQ
Sbjct: 59  KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKIAAAPKFSISMRVASKQ 118

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI
Sbjct: 119 AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 178

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY
Sbjct: 179 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 210

[Close]

BLAST of MS001798 vs. ExPASy TrEMBL
Match: A0A6J1IG97 (uncharacterized protein LOC111473110 OS=Cucurbita maxima OX=3661 GN=LOC111473110 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.2e-55
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           +EDGGADRHS+   L LKSSFFSPLR      IP L  Q S  ++AAPK  +SMRVASKQ
Sbjct: 23  QEDGGADRHSSF--LSLKSSFFSPLR-----NIPSLRKQNSA-VAAAPK--VSMRVASKQ 82

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYEQSVTKN NE D RKARKAQI
Sbjct: 83  AYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQI 142

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           Q+DEA+G VLPIAAAVGIVALVGLYLYLN+ +
Sbjct: 143 QKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

[Close]

BLAST of MS001798 vs. ExPASy TrEMBL
Match: A0A6J1EIL7 (uncharacterized protein LOC111434474 OS=Cucurbita moschata OX=3662 GN=LOC111434474 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.2e-55
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1   KEDGGADRHSNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMRVASKQ 60
           +EDGGADRHS+   L LKSSFFSPLR      IP L  Q S  ++AAPK  +SMRVASKQ
Sbjct: 23  QEDGGADRHSSF--LSLKSSFFSPLR-----NIPSLRKQNSA-VAAAPK--VSMRVASKQ 82

Query: 61  AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKARKAQI 120
           AYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYEQSVTKN NE D RKARKAQI
Sbjct: 83  AYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQI 142

Query: 121 QRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           Q+DEA+G VLPIAAAVGIVALVGLYLYLN+ +
Sbjct: 143 QKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

[Close]

BLAST of MS001798 vs. ExPASy TrEMBL
Match: A0A0A0LNF5 (Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G000640 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.9e-55
Identity = 120/157 (76.43%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 1   KEDGGADRH-----SNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMR 60
           +EDGG DR+     S SNRL LKSSF SPLR     KIP L  Q S   +A+PKF  SMR
Sbjct: 23  QEDGGTDRNSMFLDSASNRLSLKSSFISPLR-----KIPSLRKQNSVVAAASPKF--SMR 82

Query: 61  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKA 120
           VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQ+V+KN NE DVRKA
Sbjct: 83  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKNDNEFDVRKA 142

Query: 121 RKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           RKAQIQ+DEA+G VLPIAAA+GIVALVGLYLYLNS +
Sbjct: 143 RKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of MS001798 vs. ExPASy TrEMBL
Match: A0A5A7UPF0 (Rubredoxin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00170 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.8e-55
Identity = 120/157 (76.43%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 1   KEDGGADRH-----SNSNRLYLKSSFFSPLRTPSNSKIPPLGSQKSGKISAAPKFSISMR 60
           +EDGG DR+     S SNRL LKSSF SPLR     KIP L  Q S   +A+PKF  SMR
Sbjct: 23  QEDGGTDRNSMFLDSASNRLSLKSSFISPLR-----KIPSLRRQNSVVAAASPKF--SMR 82

Query: 61  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNVNELDVRKA 120
           VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQ+V KN NE D+RKA
Sbjct: 83  VASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVNKNDNEFDLRKA 142

Query: 121 RKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNSVY 153
           RKAQIQ+DEA+G VLPIAAA+GIVALVGLYLYLNSV+
Sbjct: 143 RKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of MS001798 vs. TAIR 10
Match: AT5G51010.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-43
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 36  LGSQKSGKISAAPKFSISMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRR 95
           LG++KS   S+AP+F  SMRV+SKQAYICRDCGYIYNDRTPFDKLPD YFCPVC APKRR
Sbjct: 40  LGNKKSLSKSSAPRF--SMRVSSKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRR 99

Query: 96  FRPYEQSVTKNVNELDVRKARKAQIQRDEAVGNVLPIAAAVGIVALVGLYLYLNS 151
           FR Y   V+KNVN+ DVRKARKA++QRDEAVG  LPI  AVG++AL  LY Y+NS
Sbjct: 100 FRAYMPDVSKNVNDKDVRKARKAELQRDEAVGKALPIGIAVGVLALAALYFYVNS 152

[Close]

BLAST of MS001798 vs. TAIR 10
Match: AT5G17170.1 (rubredoxin family protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-09
Identity = 35/107 (32.71%), Postives = 49/107 (45.79%), Query Frame = 0


Query: 39  QKSGKISAAPKFSISMRVASK--QAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRF 98
           +K  K  A P+F   +    K    +IC DCG+IY     FD+ PD Y CP C APK+RF
Sbjct: 172 KKLNKRPAPPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRF 231

Query: 99  RPYEQSVTKNVNELDVRKARKAQIQRDEAVGNVLPIAAAVGIVALVG 144
             Y+ +  K +                   G + PI   VG++A +G
Sbjct: 232 AKYDVNTGKAIG------------------GGLPPIGVIVGLLAGLG 260

The following BLAST results are available for this feature:

BLAST of MS001798 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134987.1	1.7e-78	99.34	uncharacterized protein LOC111007102 [Momordica charantia]	[more]
XP_038880712.1	8.3e-57	79.62	uncharacterized protein LOC120072320 isoform X1 [Benincasa hispida]	[more]
XP_023531329.1	1.6e-55	78.95	uncharacterized protein LOC111793604 [Cucurbita pepo subsp. pepo]	[more]
XP_022927654.1	4.6e-55	78.29	uncharacterized protein LOC111434474 [Cucurbita moschata] >XP_022974453.1 unchar...	[more]
XP_004138023.1	6.0e-55	76.43	uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KGN63440.1 hy...	[more]

BLAST of MS001798 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04170	2.4e-06	51.16	Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) ...	[more]
O26258	9.1e-06	37.70	Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096...	[more]
P24297	4.5e-05	40.00	Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1...	[more]
P58992	1.0e-04	40.00	Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 1038...	[more]
Q9AL94	5.0e-04	39.22	Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /...	[more]

BLAST of MS001798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1D8	8.3e-79	99.34	uncharacterized protein LOC111007102 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1IG97	2.2e-55	78.29	uncharacterized protein LOC111473110 OS=Cucurbita maxima OX=3661 GN=LOC111473110...	[more]
A0A6J1EIL7	2.2e-55	78.29	uncharacterized protein LOC111434474 OS=Cucurbita moschata OX=3662 GN=LOC1114344...	[more]
A0A0A0LNF5	2.9e-55	76.43	Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G00...	[more]
A0A5A7UPF0	3.8e-55	76.43	Rubredoxin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MS001798 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51010.1	2.5e-43	73.04	Rubredoxin-like superfamily protein	[more]
AT5G17170.1	6.9e-09	32.71	rubredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.28.10		coord: 59..99 e-value: 2.3E-13 score: 51.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..43
None	No IPR available	PANTHER	PTHR48136	RUBREDOXIN-LIKE SUPERFAMILY PROTEIN	coord: 11..151
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 59..104
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 62..96 e-value: 5.0E-5 score: 23.2
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 62..99 e-value: 1.00057E-12 score: 57.3158
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 59..99 score: 12.16588

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001798.1	MS001798.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005506	iron ion binding