MS001787 (gene) Bitter gourd (TR) v1

Overview
NameMS001787
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsuccinate dehydrogenase assembly factor 2, mitochondrial
Locationscaffold30: 55486 .. 57360 (+)
RNA-Seq ExpressionMS001787
SyntenyMS001787
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAATGGCGACTTTTATAAGGGCTATGATCAAAGCTCATCGAGTTCTATACATGGAAACCCCCGCCATTTTGAGAAGGAAAACAATGCCCTTCATGTCTGGCGCTTTTATTGGGTTGGAGAACCTGCAAACCCGATTAACTGATCATTATCAGAGTCAACATGGTTCTTTTTTTAGTTTCCGTAGCTCTTCTACAAATAAAAATCCTCTTCCGACAGACATCGATCTCTCAAATGAAGAAAGCAAGAGGCGCTTGTTCAATAGGTTCATCCTCGGTTATTTTGTCCATTATCTTTCACATCTCTCTCGCTCTCTCTCTCGATTATTGGCATTTGACTAGTCAATTTTTGTCGTTCGCTTTAACAGGCTGCTGTACCGGAGTAGACAACGAGGGCTTCTGGAATTGGATCTGATACTTGGGAAATGGGTAGAGGACCACATCAAATCTATGGATGCAGATGGTATCAAAGCCTTGATTAATGTTCTTGACCTGGTATTTTTTTCTTGAATCTTCTACCTATTTGTGGAATGATTTTCTTTACTTTTAGTCCATGGCTGCACTGCTCCTGTCACTTCTTCAAGTGATCGAATGCCCTCTTCCCTTGGGGATTTAAAATACCACTGCAAGTTCATTGTTCTGAGTATCGGTGGTGAATTTTCAATTCTCTTGTGGATTTTGCGACAGATTCTGTCCAATATTAAGTAGAAAAAGGCAGCTGTCCCGACGGTAATCCTAACATGGATCTCTTTTCAGTTTTGTGGGTTGTCTAGCTAAAAGGGTACAAGTGAGTGTGTCTGAGTAGAAATAGTTCATGGAAGGACATATGGAATTCAGCGCCATTTTGACGTTTCTCTTTGGACTCCCACAAACTTATTTTGTACTCATTCTATATTTTTTTGTTTACCAAAAATTTGTGTGGTGCTTTTTTTTTTGGTAACTGTTGTGAATGGCATTCTTTCCCTTTGTGCTTTGTGCTTTGTTCCTTCATCTTCATTATGAGAGTTGGTTTGCATTGGATAAAAGAAAAATAAAGAGGAGGAAAGATACAGATGTGTGCATGAGAGGGTAGATTGATTAATCCAGTGGTTAAAGGTTATTTTAGTATTCGATGCATGCACACAATATGATTGCTTTGCTGATCAAAAGTAAAATTGAAAAATGTTCTCATTTTTGTCTCTTTTTTCCTTGTATCCCAATTATTGACTCTTTTTTCGCTTCAACAAGAAATTTAGTGCGAGATGTCCTCACAGACCAATGGACCATCCTTGAAGTTCCTTATATTGGAGGAGCGCTTTGAAAAGAAGTGGAAATTTGATAAATAGCTCTTAAAGAGACCATCTTTGAAGGAGGGTTGATCTTGGCAAGGAGTAGTCCTTACCAAAGAGAGAAGATAGGAGATGATTAGGAGGAATAGAAGTAGGGATTATGTTAGAGTAATTACTTCTGGATAGTGACATAAAGAAGTTTTGATTTCATTTGCTTTGTTGCAATAGAAAGAAATCTTAATATGTATCCCAATAAAATGAAGATAATAGAAATTACTACAAATATATTTGATCGTACATCTGTTCTTTAGGAAAATCCAGATTTGTGGAAGTGGTTGACTGGCCAGGAGAAACCCCCTGAAGCAGTGAAAACAAATCCTGTGAGACATCTAAGTGTGGCACTCCTGTTTTCCTTTTGTCTTTCAACTAAAGATGTGATTTACAATTGTCTTTGTCTTTGTAGGTATTTGCTGCTGTGCAAGAGAAGGTCGTGAACAATCTCAACAGACATGCCGCTCCTGAGACAAGGACGCCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGTGGTCGGGATAGCCCCATAGCAGGAAACCAG

mRNA sequence

AGGAGAATGGCGACTTTTATAAGGGCTATGATCAAAGCTCATCGAGTTCTATACATGGAAACCCCCGCCATTTTGAGAAGGAAAACAATGCCCTTCATGTCTGGCGCTTTTATTGGGTTGGAGAACCTGCAAACCCGATTAACTGATCATTATCAGAGTCAACATGGTTCTTTTTTTAGTTTCCGTAGCTCTTCTACAAATAAAAATCCTCTTCCGACAGACATCGATCTCTCAAATGAAGAAAGCAAGAGGCGCTTGTTCAATAGGCTGCTGTACCGGAGTAGACAACGAGGGCTTCTGGAATTGGATCTGATACTTGGGAAATGGGTAGAGGACCACATCAAATCTATGGATGCAGATGGTATCAAAGCCTTGATTAATGTTCTTGACCTGGAAAATCCAGATTTGTGGAAGTGGTTGACTGGCCAGGAGAAACCCCCTGAAGCAGTGAAAACAAATCCTGTATTTGCTGCTGTGCAAGAGAAGGTCGTGAACAATCTCAACAGACATGCCGCTCCTGAGACAAGGACGCCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGTGGTCGGGATAGCCCCATAGCAGGAAACCAG

Coding sequence (CDS)

AGGAGAATGGCGACTTTTATAAGGGCTATGATCAAAGCTCATCGAGTTCTATACATGGAAACCCCCGCCATTTTGAGAAGGAAAACAATGCCCTTCATGTCTGGCGCTTTTATTGGGTTGGAGAACCTGCAAACCCGATTAACTGATCATTATCAGAGTCAACATGGTTCTTTTTTTAGTTTCCGTAGCTCTTCTACAAATAAAAATCCTCTTCCGACAGACATCGATCTCTCAAATGAAGAAAGCAAGAGGCGCTTGTTCAATAGGCTGCTGTACCGGAGTAGACAACGAGGGCTTCTGGAATTGGATCTGATACTTGGGAAATGGGTAGAGGACCACATCAAATCTATGGATGCAGATGGTATCAAAGCCTTGATTAATGTTCTTGACCTGGAAAATCCAGATTTGTGGAAGTGGTTGACTGGCCAGGAGAAACCCCCTGAAGCAGTGAAAACAAATCCTGTATTTGCTGCTGTGCAAGAGAAGGTCGTGAACAATCTCAACAGACATGCCGCTCCTGAGACAAGGACGCCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGTGGTCGGGATAGCCCCATAGCAGGAAACCAG

Protein sequence

RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQWVRGWDDFKSGRDSPIAGNQ
Homology
[Close]
BLAST of MS001787 vs. NCBI nr
Match: XP_022135400.1 (uncharacterized protein LOC111007362 isoform X1 [Momordica charantia])

HSP 1 Score: 409.8 bits (1052), Expect = 1.3e-110
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS 60
           RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS
Sbjct: 98  RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS 157

Query: 61  FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD 120
           FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD
Sbjct: 158 FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD 217

Query: 121 GIKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG 180
           GIKALI+VLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG
Sbjct: 218 GIKALISVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG 277

Query: 181 QQWVRGWDDFKSGRDSPIAGNQ 203
           QQWVRGWDDFKSGRDSPIAGNQ
Sbjct: 278 QQWVRGWDDFKSGRDSPIAGNQ 299

[Close]
BLAST of MS001787 vs. NCBI nr
Match: XP_022135401.1 (succinate dehydrogenase assembly factor 2, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR 62
           MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR
Sbjct: 1   MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR 60

Query: 63  SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI 122
           SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI
Sbjct: 61  SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI 120

Query: 123 KALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ 182
           KALI+VLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ
Sbjct: 121 KALISVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ 180

Query: 183 WVRGWDDFKSGRDSPIAGNQ 203
           WVRGWDDFKSGRDSPIAGNQ
Sbjct: 181 WVRGWDDFKSGRDSPIAGNQ 200

[Close]
BLAST of MS001787 vs. NCBI nr
Match: XP_022994486.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSF 62
           MATF RA++KAH VLY++ +  + R K+MP +  A+I LENLQ RL +H Q+QHG FFSF
Sbjct: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 63  RSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADG 122
           R SST+ NPL TDIDLSNEESKRRLFNRLLYRS+QRG LELDL+LGKWVEDHI S+DADG
Sbjct: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 123 IKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQ 182
           I ALI VLDLENPDLWKWLTGQE+PP+AVKTNPVF  VQEKV+NNLN+HA+PETRTPPGQ
Sbjct: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 183 QWVRGWDDFKSGRDSPIAGNQ 203
           QWVRGWDDFK GRD PI GNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of MS001787 vs. NCBI nr
Match: XP_022930034.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita moschata])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 154/201 (76.62%), Postives = 175/201 (87.06%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSF 62
           MATF RA++KAH+VLY++ +  + R K+MP +  A+I LENLQ RL +H Q+QHG FFSF
Sbjct: 1   MATFRRAVLKAHQVLYLKPSSTVFRSKSMPLLPTAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 63  RSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADG 122
           R SST  NPL TDIDLS+EESKRRLFNRLLYRS+QRG LELDL+LGKWVEDHI S+DADG
Sbjct: 61  RCSSTTVNPLFTDIDLSDEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 123 IKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQ 182
           I+ALI VLDLENPDLWKWLTGQE+PPEAVKTNPVF  VQEKV+NNLN+HA+PETRTPPGQ
Sbjct: 121 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 183 QWVRGWDDFKSGRDSPIAGNQ 203
           QWVRGWDDFK GRD PI GNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of MS001787 vs. NCBI nr
Match: KAG7032455.1 (Succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSF 62
           MATF RA++KAH+VLY++ +  + R K+MP +  A+I LENLQ RL +H Q+QHG FFSF
Sbjct: 1   MATFRRAVVKAHQVLYLKPSSTVFRSKSMPLLPTAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 63  RSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADG 122
           R SST  NPL  DIDLSNEESKRRLFNRLLYRS+QRG LELDL+LGKWVEDHI S+DADG
Sbjct: 61  RCSSTTVNPLFPDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 123 IKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQ 182
           I+ALI VLDLENPDLWKWLTGQE+PPEAVKTNPVF  VQEKV+NNLN+HA+PETRTPPGQ
Sbjct: 121 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 183 QWVRGWDDFKSGRDSPIAGNQ 203
           QWVRGWDDFK GRD PI GNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match: Q9FI44 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.1e-54
Identity = 95/129 (73.64%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 74  DIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLEN 133
           DIDLSNEE+KRR  NRLLYRS+QRG LELDL+LG WVE+++ SMD +G+K+LI+VL+LEN
Sbjct: 60  DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLEN 119

Query: 134 PDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQWVRGWDDFKSG 193
           PDLWKWLT QE+PPEAV +NPVF+A+ EKV+ NLN+HAAPETR   GQ WVRGWDDFK G
Sbjct: 120 PDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRG 179

Query: 194 RDSPIAGNQ 203
           RD+PI+GNQ
Sbjct: 180 RDAPISGNQ 188

[Close]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match: P0CR33 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-09
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 0 

Query: 64  SSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIK 123
           S++ + PLP  +D + E+ K  L  RL+Y++R+RG LE DLIL  +  D + +MD + +K
Sbjct: 57  SNSEEWPLPEPLDRTGEDEK-TLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMK 116

Query: 124 ALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVN 166
               +LD  + D++ W   +  PP   K  P+   +Q+   N
Sbjct: 117 QFDKLLDEPDWDIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match: P0CR32 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-09
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 0 

Query: 64  SSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIK 123
           S++ + PLP  +D + E+ K  L  RL+Y++R+RG LE DLIL  +  D + +MD + +K
Sbjct: 57  SNSEEWPLPEPLDRTGEDEK-TLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMK 116

Query: 124 ALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVN 166
               +LD  + D++ W   +  PP   K  P+   +Q+   N
Sbjct: 117 QFDKLLDEPDWDIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match: A8XYZ2 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis briggsae OX=6238 GN=CBG20928 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 28/77 (36.36%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 89  RLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLENP--DLWKWLTGQEKP 148
           RLLY+S++RG+LE D++LG + E+++K M    +KA   +++ E+   DL+ +L+ ++ P
Sbjct: 38  RLLYQSKKRGILENDILLGNFAEENLKKMSEPELKAYDKLINGEHMEWDLFYYLSNKKTP 97

Query: 149 PEAVKTNPVFAAVQEKV 164
           PE V+   V+  V++ V
Sbjct: 98  PEDVEKCSVYQKVKKFV 114

[Close]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match: Q9NA72 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=Y57A10A.29 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 28/77 (36.36%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 89  RLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLENP--DLWKWLTGQEKP 148
           RLLY+S++RG+LE D++LG + E ++K M    +KA   +++ E+   DL+ +L+ ++ P
Sbjct: 35  RLLYQSKKRGILENDILLGDFAEQNLKKMSEPELKAYDKLINGEHMEWDLFYYLSNKKSP 94

Query: 149 PEAVKTNPVFAAVQEKV 164
           PE V++  V+  V++ V
Sbjct: 95  PEDVESCQVYQKVKKFV 111

[Close]
BLAST of MS001787 vs. ExPASy TrEMBL
Match: A0A6J1C101 (uncharacterized protein LOC111007362 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007362 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 6.4e-111
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS 60
           RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS
Sbjct: 98  RRMATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS 157

Query: 61  FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD 120
           FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD
Sbjct: 158 FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD 217

Query: 121 GIKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG 180
           GIKALI+VLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG
Sbjct: 218 GIKALISVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG 277

Query: 181 QQWVRGWDDFKSGRDSPIAGNQ 203
           QQWVRGWDDFKSGRDSPIAGNQ
Sbjct: 278 QQWVRGWDDFKSGRDSPIAGNQ 299

[Close]
BLAST of MS001787 vs. ExPASy TrEMBL
Match: A0A6J1C0N3 (succinate dehydrogenase assembly factor 2, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007362 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.1e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR 62
           MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR
Sbjct: 1   MATFIRAMIKAHRVLYMETPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSFR 60

Query: 63  SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI 122
           SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI
Sbjct: 61  SSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGI 120

Query: 123 KALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ 182
           KALI+VLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ
Sbjct: 121 KALISVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQ 180

Query: 183 WVRGWDDFKSGRDSPIAGNQ 203
           WVRGWDDFKSGRDSPIAGNQ
Sbjct: 181 WVRGWDDFKSGRDSPIAGNQ 200

[Close]
BLAST of MS001787 vs. ExPASy TrEMBL
Match: A0A6J1JZA0 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490192 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.7e-84
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSF 62
           MATF RA++KAH VLY++ +  + R K+MP +  A+I LENLQ RL +H Q+QHG FFSF
Sbjct: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 63  RSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADG 122
           R SST+ NPL TDIDLSNEESKRRLFNRLLYRS+QRG LELDL+LGKWVEDHI S+DADG
Sbjct: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 123 IKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQ 182
           I ALI VLDLENPDLWKWLTGQE+PP+AVKTNPVF  VQEKV+NNLN+HA+PETRTPPGQ
Sbjct: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 183 QWVRGWDDFKSGRDSPIAGNQ 203
           QWVRGWDDFK GRD PI GNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of MS001787 vs. ExPASy TrEMBL
Match: A0A6J1EQG7 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111436468 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 154/201 (76.62%), Postives = 175/201 (87.06%), Query Frame = 0 

Query: 3   MATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFSF 62
           MATF RA++KAH+VLY++ +  + R K+MP +  A+I LENLQ RL +H Q+QHG FFSF
Sbjct: 1   MATFRRAVLKAHQVLYLKPSSTVFRSKSMPLLPTAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 63  RSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADG 122
           R SST  NPL TDIDLS+EESKRRLFNRLLYRS+QRG LELDL+LGKWVEDHI S+DADG
Sbjct: 61  RCSSTTVNPLFTDIDLSDEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 123 IKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQ 182
           I+ALI VLDLENPDLWKWLTGQE+PPEAVKTNPVF  VQEKV+NNLN+HA+PETRTPPGQ
Sbjct: 121 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 183 QWVRGWDDFKSGRDSPIAGNQ 203
           QWVRGWDDFK GRD PI GNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of MS001787 vs. ExPASy TrEMBL
Match: A0A5D3C9Y9 (Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001200 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.4e-81
Identity = 151/202 (74.75%), Postives = 174/202 (86.14%), Query Frame = 0 

Query: 2   RMATFIRAMIKAHRVLYME-TPAILRRKTMPFMSGAFIGLENLQTRLTDHYQSQHGSFFS 61
           +MATFIRA+ KAH+VLY++ +P ILR K MPF+   FIGLENLQ++LT+  Q+ HG  FS
Sbjct: 2   QMATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFS 61

Query: 62  FRSSSTNKNPLPTDIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDAD 121
              SST+ NP   DIDLSNE+SKR+LFNRLLYRS+QRG LELDLILGKWVEDHI S+DAD
Sbjct: 62  LHFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDAD 121

Query: 122 GIKALINVLDLENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPG 181
           GI+ LINVLDLENPDLWKWLTGQE+PPEA+KTNPVF  V+EKV+NNLN+HA+PETRTPPG
Sbjct: 122 GIRDLINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPG 181

Query: 182 QQWVRGWDDFKSGRDSPIAGNQ 203
           QQWVRGWDDFK GRD PI GNQ
Sbjct: 182 QQWVRGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of MS001787 vs. TAIR 10
Match: AT5G51040.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). )

HSP 1 Score: 211.5 bits (537), Expect = 6.5e-55
Identity = 95/129 (73.64%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 74  DIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLEN 133
           DIDLSNEE+KRR  NRLLYRS+QRG LELDL+LG WVE+++ SMD +G+K+LI+VL+LEN
Sbjct: 60  DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLEN 119

Query: 134 PDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQWVRGWDDFKSG 193
           PDLWKWLT QE+PPEAV +NPVF+A+ EKV+ NLN+HAAPETR   GQ WVRGWDDFK G
Sbjct: 120 PDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRG 179

Query: 194 RDSPIAGNQ 203
           RD+PI+GNQ
Sbjct: 180 RDAPISGNQ 188

[Close]
BLAST of MS001787 vs. TAIR 10
Match: AT5G51040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 95/138 (68.84%), Postives = 114/138 (82.61%), Query Frame = 0 

Query: 74  DIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLD--- 133
           DIDLSNEE+KRR  NRLLYRS+QRG LELDL+LG WVE+++ SMD +G+K+LI+VL+   
Sbjct: 60  DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLVE 119

Query: 134 ------LENPDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQWV 193
                 LENPDLWKWLT QE+PPEAV +NPVF+A+ EKV+ NLN+HAAPETR   GQ WV
Sbjct: 120 SEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWV 179

Query: 194 RGWDDFKSGRDSPIAGNQ 203
           RGWDDFK GRD+PI+GNQ
Sbjct: 180 RGWDDFKRGRDAPISGNQ 197

[Close]
BLAST of MS001787 vs. TAIR 10
Match: AT5G51040.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). )

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-51
Identity = 91/129 (70.54%), Postives = 110/129 (85.27%), Query Frame = 0 

Query: 74  DIDLSNEESKRRLFNRLLYRSRQRGLLELDLILGKWVEDHIKSMDADGIKALINVLDLEN 133
           DIDLSNEE+KRR  N    RS+QRG LELDL+LG WVE+++ SMD +G+K+LI+VL+LEN
Sbjct: 60  DIDLSNEENKRRTIN----RSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLEN 119

Query: 134 PDLWKWLTGQEKPPEAVKTNPVFAAVQEKVVNNLNRHAAPETRTPPGQQWVRGWDDFKSG 193
           PDLWKWLT QE+PPEAV +NPVF+A+ EKV+ NLN+HAAPETR   GQ WVRGWDDFK G
Sbjct: 120 PDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRG 179

Query: 194 RDSPIAGNQ 203
           RD+PI+GNQ
Sbjct: 180 RDAPISGNQ 184

The following BLAST results are available for this feature:
BLAST of MS001787 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135400.11.3e-11099.50uncharacterized protein LOC111007362 isoform X1 [Momordica charantia][more]
XP_022135401.11.5e-10999.50succinate dehydrogenase assembly factor 2, mitochondrial isoform X2 [Momordica c... [more]
XP_022994486.11.4e-8376.62succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita maxima][more]
XP_022930034.13.1e-8376.62succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita moschata][more]
KAG7032455.13.1e-8376.62Succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita argyrosperma... [more]
BLAST of MS001787 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FI449.1e-5473.64Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
P0CR336.8e-0933.33Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
P0CR326.8e-0933.33Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
A8XYZ21.4e-0636.36Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis brigg... [more]
Q9NA721.4e-0636.36Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elega... [more]
BLAST of MS001787 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C1016.4e-11199.50uncharacterized protein LOC111007362 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C0N37.1e-11099.50succinate dehydrogenase assembly factor 2, mitochondrial isoform X2 OS=Momordica... [more]
A0A6J1JZA06.7e-8476.62succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A6J1EQG71.5e-8376.62succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata O... [more]
A0A5D3C9Y92.4e-8174.75Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MS001787 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51040.16.5e-5573.64unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ... [more]
AT5G51040.31.3e-5268.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G51040.25.7e-5170.54unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 88..157
e-value: 8.7E-23
score: 80.1
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 73..168
e-value: 5.5E-23
score: 82.4
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 88..153
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 55..202
NoneNo IPR availablePANTHERPTHR12469:SF5FLAVINATOR OF SUCCINATE DEHYDROGENASEcoord: 55..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001787.1MS001787.1mRNA