MS001718 (gene) Bitter gourd (TR) v1

Overview


Name	MS001718
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
Location	scaffold571: 461962 .. 466204 (-)
RNA-Seq Expression	MS001718
Synteny	MS001718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCGCAGTAGATGCTGCAGGAGAGCCAATTCCTACATCGGCGGTGCTAATGTCGTCGGCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGATGCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTTTCTCTGTAAGTGAATAACCTTTTGTTCTTTTCTGAGCCGAATTATTGATTTGCCATTTTTCGTTGGTTCTGGTTTCTATGGTTGCTTGATTTCCTTCGGATTGCTCCGGAACTACCACATTTGGAAATTTTGAATTGCTTTAGTTATCATATGATCGTCTTCGATCTGCTAGCAAATAGAGAATTAGGAAATACATTGCTTTAGTAATCATATGATCATCTTCTGATCCGCTAACAACTTAGCAAATAGAGGATTAGAAATTTAGGAAAATAAAAAAGCGATATTTCTTAGATTTGACATAGAAATGATTGGGTACTGGTGCGGATAAAATCTTAGTTTTATAACCTTTTATCTGACTAATCTGATCGTGTACATGGTTACTATTCTGAGGTCACTCACTTGTAGGTTGCTTTAGACTTTAGCTTAGGTGCAAGATGGAGATAATAGACCGTGGAGATGTTCCAAATTTACATTTACTTTAATCGCTCTTTGGGTTTTAAATTATAATATCGTGGTTGTTGAAGATTGCGAATACCAAATGAAATGTTGTTAGACATATGTGCTTGGAGGTTAGATGACCATGAACAATTTTAATTCCGCAATTCGTAGGGGCAGTAGCTTTTGCTTGAACGGCTAAATGCTTGATTGGCGAACATTTAACTTGACTGCTTATCTGAATATTAGTTGCTTATGTTGTATCCTCAAGGGATAGCTTGGGGCTTCAAGGAATATCCTTGAGGTCTTGGGTTCAAACCACAAGGAACGCAACTCCACCAAGCAATTACCCCGGCATTTCATTTTCAGTGGTTGAATATGTGTTTGGAAATATAAAACTAGTATTGGGTGGTAGAATGAAGAGATGTTACTTCACTTAAATACATTGAATTAGAGAGTTTAATAGTATGATCAGTTCAAATTGAAGCCCCGGATGCTTGATTCATTAAACAAGTACGCCACATTTGAATGCTAGAACATATAAAATGGTCCTTAATCTTTTAGGTAATTCTCAATTTGGTCATTTACCCTTGATGTTTTAAAAATTATCATATGAAATTCTTTTTAAATTTTGCTAATAAAAAATTGATTCGTCATTAAATTGTTGTTTTACTAACATATTTGGATATGCGGACATGCTATTCAAATGCTACTTGACTCATGAAATCCAACATGTAATAAAAAAGAATCCAACCCACCCATTAACAAAATTCATTTTTTCTTCTAAGTGGCATGTTTAGGTATTTCTCGTGTGTTTAAATATGATAAATAAAACAATAATTTAATGATACATCAACTTTTTGTTAAAAAAATTTATGGAAGGATCTAATTGAGAATTTTAAAGATTGAGAATCAAGTTGAGAATTACCTAAAATATGATAGATCATTTCGTATATTTAGCCTAAACTATATAAAAAGGTATGACTCCAGAAGGCATTGTGTTATCGTCTTGATATTCTGATTTATTGTTTACTATGTTCTATAATTTTATTTGTTTGATATCTTGCGTGAAGTATTAGCCAACTGCAATGCATTGAATTTATATTGGTGGAATGATGAATTTTAATCTAATTCTGATGCAAGATGGATGAATGCATTTCATTATAAATACCCAGTTATATTGAATCTCAAGTTATTGTTTCCATAATCATCATTCTGCATATTTCGTGATTGCTGCTGAATAGTCATTAACTATCCATTCGATAGACACTATAGCTTTGAACAATATAGCTTTGTCTCTCTTTTAACCAATTGGAGAGCCTTTTTTAACTCCATTGGTTTGGGATCTTCCCCTTCTGTATTTCTTTACCATTTCATTACATTAATGAAATCTGTTTCTCCTAAAAAAAAAAAAATCTATTCATTCGATAGCTTATTAAAATAATGAGGCTAAATTACAAAAAACCCCTTCAACTCTGCCATTTGTTTCCAAAATATCTCTATCTTTTCTAAAGTTACAATACTATCGCCCCCAAAGGACAGTCCAGTTGGCAAGGGTTTGAAGTCTCTTGGTCATATCGGCTTAGTAGTCTCAAGTTTGAATCTTTTTGTGAGCTTAATACCAAAAACCCTTGATGTCTCCTGGGTACAAGTCTTGGGGCGGGCGCAGGTGCCCCTAGGTATAGGGGAGTAAAGCTCCGACTCCCAGTTATAAAAAAATTAAATAAATAAGGTTACAATACTATCCTCGACATTTCATAAACATTTCAAAATTACCATTTGATCTAACATCCATTAATATTTTGAACGGAAAGTTGGCTTGGCAAAACCTAGAATCTAGAATGACGTGACAATTGTAAAAAGGGAATGAGTTCAATCCATGGTGACCACCTACCTAGGATTTAATATCCTACGAGTTTCCTTGTTAACCAAATGTAGTAGGGTCATGCGGTTGGCCCGTGAATAGTCGAGGTGCGCGTAAGCTGACCCAGATACACAAATAAAAAAATAGAATCTAGAATGACGTGACAATTAATGTAGAAACTTGCTTGGATTAATTATGAAAAGAGAGAAAATTTGGAAGAAGCTAGGATTAAGGAAAAATTGGGTAGATGGCAGAGAAGCAAACTCGGTTGACAATGGAAAAAGAAGACTTTTAGAGTAAAATTGAGACTTATTTTCTCGATCCAACAACGGCATTTGGGGATATTGAAACGTTCAATATGAAGAGAGAAGATGATTGCCCAAATTCTTGCATAAAATTTCGAGAAAGAGGGGGGAAAATGTTTGAGAAAGTTTGCCCAAAACCATTTGAAGATGTTCGTGTCTTCATGATTGTTTGTGAATTATGACAGAATTTTTTGTTCTTTTAGGTACATCACATATTTAAGAAATTTTGCCCCTTTGGCTTGTCCAGAAAAGGGAACACCCTTTTTTCTCTCTTCAACCTATTCTTTCCCTCCAGAAATCCCATTTGCAGCTGGGTGGGTTTTTTCAGCACAGTTGGGTTGTTACTTTCTTTTCTTTTGGTGGTCAGATTCTTACTGAACACCGAGAAAAACAACATAGAAACACACGAGGGGTAATTAGTTTCTAAGGGCTCGTTTGGTAACGTTCCTGTTTCTTGTTTCTATTTTTTTGCTTTTTAATGAAGAAAAATATTTTGCATGGTTTCAACCTCCTAGAATTCAAATATGATATAACAATCTTTTTATTTATGTTTAGGAAAAAATTGAAAATGGGAACAAGAAAAGAAAAACTTGTTTTGATTGTTCTCAAAATTTCTGTACAATTTTGAGAATGTTCCAAAAAAAAAAAGTAGAAACAAGAAATAAATTTAGTTGTAAAATGCTTAGATTTATTAAGAAAATTGGAAACGAGAACGTTACCAAACGGGCTCTAAGAAATCAACTCTCAATTCCTTAATTAAGGGGTAATTAGCTTTTGATTTCACTCTTCAAGTACTCTTTCTCTTTCAAGTTCTGTAAATTTTTAATTCCTTCTTGTGCCCCCCTCTTACCAACTAGGGTTTGTTTCAGATTCCCTCAGTTTTTTCCCCTCGTGAGTACCCCTATTTTATGTCACGTTTCCGTTCAAAATATTTAGAGAGGTTTGCTCATAAGATAGTATTGAAACTAGGTCTTTTATTATTTTTTATTTTATATGTATATTTTTTTGTAATTTAGCCAAAAGAATGAAGAATCCTAATTGTTTTTTATTTGGCTGATATCCTTTACTTTATTTTTTTTACCGTGATTGATATTTTTTATTTTTCTCCTGGTTGGCTGGGTCCACGTCTTATCACAAGTACTATTGTCTACTTTTGCCTTATACGCTCTTACACCGTTCTTTATCACTTTTTTAGCTGGATCTTTTGTGAGTGAGCCATCCTTTCATTGCATCAATTAAATTCTCTTGCCCATGCATTATATCCCATCATTCAATCACTCGCCATATCGATCCCATAATTAACCTAAATTCTGCTTCTGTTTGCAGGCTTAAAGATCTTCATCAAAGGTGCACGAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACTAACGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGGATGTCCCTTAGAA

mRNA sequence

ATGGCGAGCGCAGTAGATGCTGCAGGAGAGCCAATTCCTACATCGGCGGTGCTAATGTCGTCGGCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGATGCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTTTCTCTGCTTAAAGATCTTCATCAAAGGTGCACGAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACTAACGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGGATGTCCCTTAGAA

Coding sequence (CDS)

ATGGCGAGCGCAGTAGATGCTGCAGGAGAGCCAATTCCTACATCGGCGGTGCTAATGTCGTCGGCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGATGCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTTTCTCTGCTTAAAGATCTTCATCAAAGGTGCACGAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACTAACGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGGATGTCCCTTAGAA

Protein sequence

MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCVLSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE

Homology

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BLAST of MS001718 vs. NCBI nr
Match: XP_022138355.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 3.5e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of MS001718 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-51
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. NCBI nr
Match: KAG7026281.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MA+AVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

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BLAST of MS001718 vs. NCBI nr
Match: XP_004135555.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_023175 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIA  CRSENVAYLQCK+KD NPEKCLDKG QVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYY+TNEFDLCRKEQEAFEKGCPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQEAFEKGCPLE 106

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BLAST of MS001718 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-43
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           M+SAVDA G PIPTSAVL +SAKHI   C  ENVA+L+CKK D NPEKCLDKG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of MS001718 vs. ExPASy Swiss-Prot
Match: Q9SQT4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.3e-42
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 3   SAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCVLS 62
           +AVD  G PIPTSAVL +SAKHI   C  EN+A+L+CKK D NPEKCL+KG+ VTRCVL 
Sbjct: 5   AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63  LLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LLKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 65  LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of MS001718 vs. ExPASy TrEMBL
Match: A0A6J1C988 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Momordica charantia OX=3673 GN=LOC111009549 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.7e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of MS001718 vs. ExPASy TrEMBL
Match: A0A6J1KXR2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111499155 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. ExPASy TrEMBL
Match: A0A6J1H2X4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111459990 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCLDKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. ExPASy TrEMBL
Match: A0A6J1KIR7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111494823 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. ExPASy TrEMBL
Match: A0A6J1EWD6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111436739 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           MASAVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of MS001718 vs. TAIR 10
Match: AT5G18800.1 (Cox19-like CHCH family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           M+SAVDA G PIPTSAVL +SAKHI   C  ENVA+L+CKK D NPEKCLDKG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of MS001718 vs. TAIR 10
Match: AT5G18800.2 (Cox19-like CHCH family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60
           M+SAVDA G PIPTSAVL +SAKHI   C  ENVA+L+CKK D NPEKCLDKG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of MS001718 vs. TAIR 10
Match: AT3G06310.1 (Cox19-like CHCH family protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.6e-43
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 3   SAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCVLS 62
           +AVD  G PIPTSAVL +SAKHI   C  EN+A+L+CKK D NPEKCL+KG+ VTRCVL 
Sbjct: 5   AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63  LLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LLKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 65  LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of MS001718 vs. TAIR 10
Match: AT3G06310.3 (Cox19-like CHCH family protein )

HSP 1 Score: 170.6 bits (431), Expect = 6.6e-43
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 3   SAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCVLS 62
           +AVD  G PIPTSAVL +SAKHI   C  EN+A+L+CKK D NPEKCL+KG+ VTRCVL 
Sbjct: 5   AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63  LLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 107
           LLKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 65  LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of MS001718 vs. TAIR 10
Match: AT3G06310.2 (Cox19-like CHCH family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  SAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCVLS 62
          +AVD  G PIPTSAVL +SAKHI   C  EN+A+L+CKK D NPEKCL+KG+ VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

The following BLAST results are available for this feature:

BLAST of MS001718 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138355.1	3.5e-54	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charan...	[more]
XP_022958837.1	1.6e-51	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022930219.1	2.1e-51	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
KAG7026281.1	4.8e-51	93.40	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbi...	[more]
XP_004135555.1	1.5e-49	92.45	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus]...	[more]

BLAST of MS001718 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE7	1.7e-43	78.30	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
Q9SQT4	9.3e-42	75.96	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of MS001718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C988	1.7e-54	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Momordica char...	[more]
A0A6J1KXR2	7.9e-52	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1H2X4	7.9e-52	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1KIR7	1.0e-51	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1EWD6	1.0e-51	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]

BLAST of MS001718 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18800.1	1.2e-44	78.30	Cox19-like CHCH family protein	[more]
AT5G18800.2	1.2e-44	78.30	Cox19-like CHCH family protein	[more]
AT3G06310.1	6.6e-43	75.96	Cox19-like CHCH family protein	[more]
AT3G06310.3	6.6e-43	75.96	Cox19-like CHCH family protein	[more]
AT3G06310.2	1.3e-17	67.21	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 71..104 e-value: 9.5E-11 score: 41.6
None	No IPR available	PANTHER	PTHR13344:SF2	CHCH-RELATED	coord: 1..105
None	No IPR available	PROSITE	PS51808	CHCH	coord: 68..106 score: 15.214903
None	No IPR available	PROSITE	PS51808	CHCH	coord: 26..67 score: 10.91888
IPR016680	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001718.1	MS001718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone