MS001716 (gene) Bitter gourd (TR) v1

Overview
NameMS001716
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLow-density receptor-like protein
Locationscaffold571: 453103 .. 453467 (-)
RNA-Seq ExpressionMS001716
SyntenyMS001716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGTCGACTGGTAGGATTACGTTTCGCGTTCTCATGGTGGTGCTCCTCCTCCTTGTCATTTTGTATGTCGGTCGTCCTCTGTACTGGAAAATTTCCGCAACTGTCCATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTGCGTTATTTGAATGTTAAATTTATGTGTTTAGGTTCGTCTGAGCTTTGCGTGGAGTTTGAATTCTTCGTTTTGGACCTGCATTTCAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGAAAAGAAGGTCGGATCGGTTGCTACTCGGAGGCTGCTTCATCAGGTTTTG

mRNA sequence

ATGGCGTCGTCGACTGGTAGGATTACGTTTCGCGTTCTCATGGTGGTGCTCCTCCTCCTTGTCATTTTGTATGTCGGTCGTCCTCTGTACTGGAAAATTTCCGCAACTGTCCATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGAAAAGAAGGTCGGATCGGTTGCTACTCGGAGGCTGCTTCATCAGGTTTTG

Coding sequence (CDS)

ATGGCGTCGTCGACTGGTAGGATTACGTTTCGCGTTCTCATGGTGGTGCTCCTCCTCCTTGTCATTTTGTATGTCGGTCGTCCTCTGTACTGGAAAATTTCCGCAACTGTCCATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGAAAAGAAGGTCGGATCGGTTGCTACTCGGAGGCTGCTTCATCAGGTTTTG

Protein sequence

MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDEKKVGSVATRRLLHQVL
Homology
[Close]
BLAST of MS001716 vs. NCBI nr
Match: XP_022138556.1 (uncharacterized protein LOC111009689 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 5.1e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTGRITFRVLMVVLLLLVI YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTGRITFRVLMVVLLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL 93
          SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL 92

[Close]
BLAST of MS001716 vs. NCBI nr
Match: XP_038875265.1 (uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST RITFRV+MVV LLLV  YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQVL 93
          SVGWYHDESDSGVH   D KK GSVA RRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQVL 95

[Close]
BLAST of MS001716 vs. NCBI nr
Match: XP_038875268.1 (uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 9.2e-35
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST RITFRV+MVV LLLV  YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGVH   D KK GSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQL 94

[Close]
BLAST of MS001716 vs. NCBI nr
Match: KAG6593936.1 (hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS  RITFRV+MVV+LLLVI YVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGVH   D KK GSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQV 94

[Close]
BLAST of MS001716 vs. NCBI nr
Match: XP_022930338.1 (uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS  RITFRV+MVV+LLLVI YVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGVH   D KK GSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of MS001716 vs. ExPASy TrEMBL
Match: A0A6J1CA23 (uncharacterized protein LOC111009689 OS=Momordica charantia OX=3673 GN=LOC111009689 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTGRITFRVLMVVLLLLVI YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTGRITFRVLMVVLLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL 93
          SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQVL 92

[Close]
BLAST of MS001716 vs. ExPASy TrEMBL
Match: A0A0A0KBE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST +ITFRV+MVV+LLLV+ YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQVL 93
          SVGWYHDESDSGVH   D KK GS A RRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]
BLAST of MS001716 vs. ExPASy TrEMBL
Match: A0A6J1EUV5 (uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.6e-35
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS  RITFRV+MVV+LLLVI YVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGVH   D KK GSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of MS001716 vs. ExPASy TrEMBL
Match: A0A1S3C994 (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST +ITFRV+MVV+LLLV+ YVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---HDEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGV   +D KK GSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of MS001716 vs. ExPASy TrEMBL
Match: A0A6J1EWN5 (uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS  RITFRV+MVV+LLLVI YVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVH---DEKKVGSVATRRLLHQV 92
          SVGWYHDESDSGVH   D KK GSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]
BLAST of MS001716 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-26
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 2  ASSTGRITFRVLMVVLLLLVILYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T RI FR ++++ L++V+ YVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHD--EKKVGSVATRRLL 89
          VGWYHDESDSG  +   KK G   +RRLL
Sbjct: 66 VGWYHDESDSGFREGHNKKSGIAVSRRLL 94

The following BLAST results are available for this feature:
BLAST of MS001716 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138556.15.1e-4198.91uncharacterized protein LOC111009689 [Momordica charantia][more]
XP_038875265.11.4e-3588.42uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida][more]
XP_038875268.19.2e-3587.23uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida][more]
KAG6593936.11.2e-3487.23hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022930338.11.6e-3486.17uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata][more]
BLAST of MS001716 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS001716 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CA232.4e-4198.91uncharacterized protein LOC111009689 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0KBE93.4e-3586.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1[more]
A0A6J1EUV57.6e-3586.17uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3C9941.0e-3486.17uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1EWN51.3e-3486.17uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of MS001716 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G18850.11.3e-2664.04unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001716.1MS001716.1mRNA