MS001641 (gene) Bitter gourd (TR) v1

Overview


Name	MS001641
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold377: 349383 .. 349580 (+)
RNA-Seq Expression	MS001641
Synteny	MS001641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGGATGAGAACAATACTATTCAGGCGGCTCTTTTCTCGTCCCATCCTCTCCTTAACCCGATTTTGGTAGAAATTTTGGCGATTCGAGAGAGGCTTCGTCTGGCTTCTCGGATGGGGTTCCCCAAAGTTGTGACGGAGTCGGATTCACTGGAAGCTGTTAACCTGATCACCAGTGAGGAAGTTATTCACAACGAG

mRNA sequence

ATTTGGGATGAGAACAATACTATTCAGGCGGCTCTTTTCTCGTCCCATCCTCTCCTTAACCCGATTTTGGTAGAAATTTTGGCGATTCGAGAGAGGCTTCGTCTGGCTTCTCGGATGGGGTTCCCCAAAGTTGTGACGGAGTCGGATTCACTGGAAGCTGTTAACCTGATCACCAGTGAGGAAGTTATTCACAACGAG

Coding sequence (CDS)

ATTTGGGATGAGAACAATACTATTCAGGCGGCTCTTTTCTCGTCCCATCCTCTCCTTAACCCGATTTTGGTAGAAATTTTGGCGATTCGAGAGAGGCTTCGTCTGGCTTCTCGGATGGGGTTCCCCAAAGTTGTGACGGAGTCGGATTCACTGGAAGCTGTTAACCTGATCACCAGTGAGGAAGTTATTCACAACGAG

Protein sequence

IWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVTESDSLEAVNLITSEEVIHNE

Homology

[Close]

BLAST of MS001641 vs. NCBI nr
Match: XP_022155289.1 (uncharacterized protein LOC111022426 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 3   DENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVTESDSLEAVNLI 58
           D N  I AA+   H +  P+L EILAIRE LRLA+R+G  +V+ ESDSLEA+NLI
Sbjct: 161 DGNAEIVAAMIDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI 215

[Close]

BLAST of MS001641 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 5   NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVTESDSLEAVNLI 58
           N  I  A+   H +  P+L +ILAIRE L LA+R+G  +VV E+DSLEA+NLI
Sbjct: 98  NAEIVGAMVDFHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLI 150

[Close]

BLAST of MS001641 vs. ExPASy TrEMBL
Match: A0A6J1DPU1 (uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022426 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 3   DENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVTESDSLEAVNLI 58
           D N  I AA+   H +  P+L EILAIRE LRLA+R+G  +V+ ESDSLEA+NLI
Sbjct: 161 DGNAEIVAAMIDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI 215

[Close]

BLAST of MS001641 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 5   NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVTESDSLEAVNLI 58
           N  I  A+   H +  P+L +ILAIRE L LA+R+G  +VV E+DSLEA+NLI
Sbjct: 98  NAEIVGAMVDFHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLI 150

The following BLAST results are available for this feature:

BLAST of MS001641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155289.1	3.8e-06	58.18	uncharacterized protein LOC111022426 [Momordica charantia]	[more]
XP_022158489.1	7.9e-04	52.83	uncharacterized protein LOC111024968 [Momordica charantia]	[more]

BLAST of MS001641 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPU1	1.8e-06	58.18	uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DZK3	3.8e-04	52.83	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MS001641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..65 e-value: 2.4E-6 score: 27.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001641.1	MS001641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity