MS001558 (gene) Bitter gourd (TR) v1

Overview


Name	MS001558
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UDP-glucose:glycoprotein glucosyltransferase isoform X1
Location	scaffold119: 308665 .. 308979 (+)
RNA-Seq Expression	MS001558
Synteny	MS001558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCATTGTATGTGATGTGGTGGATTTTAGAAGTTCAAGGGAGGTTTGGAAAGCACTGGAAGATATCTATGGTGCCACCAGCAAAGTTCGAATTAATCAATTGATGAATACTTTGCAAAATACTAAGAAAGGCTCTTTGAAAACGTTTGAATATCTTGGACTCATGAAACAGACGTCAGAGAGTCTTAAATTAGCAGGTGAACCTGTTACTTTGAGTTATCTAACTTCTTTTGTACTGTCAGATTTAGAGGCAGAATACCTTCCAATTGTATGTCAAATTGAAGGGAGAGAATCAACTTTATGGCAAGAACTC

mRNA sequence

CCTTCCATTGTATGTGATGTGGTGGATTTTAGAAGTTCAAGGGAGGTTTGGAAAGCACTGGAAGATATCTATGGTGCCACCAGCAAAGTTCGAATTAATCAATTGATGAATACTTTGCAAAATACTAAGAAAGGCTCTTTGAAAACGTTTGAATATCTTGGACTCATGAAACAGACGTCAGAGAGTCTTAAATTAGCAGGTGAACCTGTTACTTTGAGTTATCTAACTTCTTTTGTACTGTCAGATTTAGAGGCAGAATACCTTCCAATTGTATGTCAAATTGAAGGGAGAGAATCAACTTTATGGCAAGAACTC

Coding sequence (CDS)

CCTTCCATTGTATGTGATGTGGTGGATTTTAGAAGTTCAAGGGAGGTTTGGAAAGCACTGGAAGATATCTATGGTGCCACCAGCAAAGTTCGAATTAATCAATTGATGAATACTTTGCAAAATACTAAGAAAGGCTCTTTGAAAACGTTTGAATATCTTGGACTCATGAAACAGACGTCAGAGAGTCTTAAATTAGCAGGTGAACCTGTTACTTTGAGTTATCTAACTTCTTTTGTACTGTCAGATTTAGAGGCAGAATACCTTCCAATTGTATGTCAAATTGAAGGGAGAGAATCAACTTTATGGCAAGAACTC

Protein sequence

PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTSESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL

Homology

[Close]

BLAST of MS001558 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI CDVVDFRSSREVWKALED+YGATSK RINQL N LQNTKK SLK  EYLGLMKQ S
Sbjct: 120 PSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMKQAS 179

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           ESLKLAGEPV  +YL S VLS LEAEYLPIVCQIEG++ST WQEL
Sbjct: 180 ESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQEL 224

[Close]

BLAST of MS001558 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI CDVVDFRSSREVWKALED+YGATSK RINQL N LQNTKK SLK  EYLGLMKQ S
Sbjct: 120 PSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMKQAS 179

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           ESLKLAGEPV  +YL S VLS LEAEYLPIVCQIEG++ST WQEL
Sbjct: 180 ESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQEL 224

[Close]

BLAST of MS001558 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 64/97 (65.98%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI  DVV+ ++S EVW ALE ++G+TSK RINQL N+LQNTKKG++K   YL  MKQTS
Sbjct: 112 PSIAADVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKKGAMKMTXYLAFMKQTS 171

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGR 98
           E LKLAGEPVTLSYL+S +L+  EAEYLPI+C IE +
Sbjct: 172 EDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIEDK 208

[Close]

BLAST of MS001558 vs. NCBI nr
Match: XP_022142770.1 (uncharacterized protein LOC111012809 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           P I CDV+   +SR+VWKALED+Y   +K RINQL  +LQ T+K  LK  +YL  MKQ +
Sbjct: 3   PIIACDVLSMATSRDVWKALEDLYETANKARINQLKTSLQTTRKNQLKMSDYLSTMKQLA 62

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           + L LAGEP++ S L S VL+ L AEYL I+CQI  +E+  WQE+
Sbjct: 63  DCLTLAGEPISTSSLLSSVLTGLNAEYLQIICQINAKENISWQEV 107

[Close]

BLAST of MS001558 vs. NCBI nr
Match: KAE8652677.1 (hypothetical protein Csa_014062 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           P +  +VV+   SRE+W ALE++YGATSK     +   LQNT+KG+++  EYL +MKQT 
Sbjct: 132 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 191

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           E+++LAG P++   L S+VL  L+ EY+PIVC IEG+ S  W ++
Sbjct: 192 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIEGKNSPTWHDV 236

[Close]

BLAST of MS001558 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.3e-40
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI CDVVDFRSSREVWKALED+YGATSK RINQL N LQNTKK SLK  EYLGLMKQ S
Sbjct: 120 PSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMKQAS 179

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           ESLKLAGEPV  +YL S VLS LEAEYLPIVCQIEG++ST WQEL
Sbjct: 180 ESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQEL 224

[Close]

BLAST of MS001558 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.3e-40
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI CDVVDFRSSREVWKALED+YGATSK RINQL N LQNTKK SLK  EYLGLMKQ S
Sbjct: 120 PSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMKQAS 179

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           ESLKLAGEPV  +YL S VLS LEAEYLPIVCQIEG++ST WQEL
Sbjct: 180 ESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQEL 224

[Close]

BLAST of MS001558 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.1e-27
Identity = 64/97 (65.98%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           PSI  DVV+ ++S EVW ALE ++G+TSK RINQL N+LQNTKKG++K   YL  MKQTS
Sbjct: 112 PSIAADVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKKGAMKMTXYLAFMKQTS 171

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGR 98
           E LKLAGEPVTLSYL+S +L+  EAEYLPI+C IE +
Sbjct: 172 EDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIEDK 208

[Close]

BLAST of MS001558 vs. ExPASy TrEMBL
Match: A0A6J1CLV9 (uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012809 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           P I CDV+   +SR+VWKALED+Y   +K RINQL  +LQ T+K  LK  +YL  MKQ +
Sbjct: 3   PIIACDVLSMATSRDVWKALEDLYETANKARINQLKTSLQTTRKNQLKMSDYLSTMKQLA 62

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           + L LAGEP++ S L S VL+ L AEYL I+CQI  +E+  WQE+
Sbjct: 63  DCLTLAGEPISTSSLLSSVLTGLNAEYLQIICQINAKENISWQEV 107

[Close]

BLAST of MS001558 vs. ExPASy TrEMBL
Match: A0A0A0LUB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.9e-20
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   PSIVCDVVDFRSSREVWKALEDIYGATSKVRINQLMNTLQNTKKGSLKTFEYLGLMKQTS 60
           P +  +VV+   SRE+W ALE++YGATSK     +   LQNT+KG+++  EYL +MKQT 
Sbjct: 158 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 217

Query: 61  ESLKLAGEPVTLSYLTSFVLSDLEAEYLPIVCQIEGRESTLWQEL 106
           E+++LAG P++   L S+VL  L+ EY+PIVC IEG+ S  W ++
Sbjct: 218 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIEGKNSPTWHDV 262

The following BLAST results are available for this feature:

BLAST of MS001558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157748.1	1.1e-39	82.86	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	1.1e-39	82.86	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022143579.1	1.1e-26	65.98	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]
XP_022142770.1	1.2e-22	53.33	uncharacterized protein LOC111012809 [Momordica charantia]	[more]
KAE8652677.1	1.6e-19	47.62	hypothetical protein Csa_014062 [Cucumis sativus]	[more]

BLAST of MS001558 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU77	5.3e-40	82.86	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTZ7	5.3e-40	82.86	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CPQ7	5.1e-27	65.98	ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1CLV9	5.9e-23	53.33	uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0LUB0	7.9e-20	47.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1	[more]

BLAST of MS001558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..100 e-value: 1.1E-7 score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001558.1	MS001558.1	mRNA