MS001552 (gene) Bitter gourd (TR) v1

Overview


Name	MS001552
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	EPIDERMAL PATTERNING FACTOR-like protein 9
Location	scaffold119: 235969 .. 236154 (-)
RNA-Seq Expression	MS001552
Synteny	MS001552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAGGGGAAGAATAAAATGTTGAGAAAGTCAAGAACAAGAAGGTTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGTTGCAAATACAAGTGTAGAGCTGAGCAAGTACCTGTGGAAGGCAATGACCCTATCAATAGTGCTTACCACTATAGATGTGTTTGTCATAGG

mRNA sequence

CTTCAGGGGAAGAATAAAATGTTGAGAAAGTCAAGAACAAGAAGGTTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGTTGCAAATACAAGTGTAGAGCTGAGCAAGTACCTGTGGAAGGCAATGACCCTATCAATAGTGCTTACCACTATAGATGTGTTTGTCATAGG

Coding sequence (CDS)

CTTCAGGGGAAGAATAAAATGTTGAGAAAGTCAAGAACAAGAAGGTTGATGATTGGTTCAACAGCACCAACATGTACTTACAATGAATGTAGAGGTTGCAAATACAAGTGTAGAGCTGAGCAAGTACCTGTGGAAGGCAATGACCCTATCAATAGTGCTTACCACTATAGATGTGTTTGTCATAGG

Protein sequence

LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR

Homology

[Close]

BLAST of MS001552 vs. NCBI nr
Match: XP_022156765.1 (uncharacterized protein LOC111023601 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 2   QGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH 61
           QGKNKMLR SRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH
Sbjct: 52  QGKNKMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH 111

Query: 62  R 63
           R
Sbjct: 112 R 112

[Close]

BLAST of MS001552 vs. NCBI nr
Match: XP_007049616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X1 [Theobroma cacao] >EOX93773.1 Stomagen [Theobroma cacao])

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQG N+      +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQGSNEAKMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. NCBI nr
Match: XP_017974533.1 (PREDICTED: uncharacterized protein LOC18612649 isoform X2 [Theobroma cacao])

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
          LQG N+      +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 37 LQGSNEAKMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 96

Query: 61 HR 63
          HR
Sbjct: 97 HR 98

[Close]

BLAST of MS001552 vs. NCBI nr
Match: XP_012490914.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Gossypium raimondii] >KJB42584.1 hypothetical protein B456_007G158800 [Gossypium raimondii])

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQ  N+   K  +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQSSNEAKMKRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. NCBI nr
Match: XP_016709292.2 (EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Gossypium hirsutum] >XP_017629965.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Gossypium arboreum] >KAB2057189.1 hypothetical protein ES319_A11G152400v1 [Gossypium barbadense] >TYI00857.1 hypothetical protein ES332_A11G161600v1 [Gossypium tomentosum] >TYJ09654.1 hypothetical protein E1A91_A11G155200v1 [Gossypium mustelinum] >KAG4174780.1 hypothetical protein ERO13_A11G141800v2 [Gossypium hirsutum] >KHG01239.1 epidermal patterning factor-like protein 9 [Gossypium arboreum])

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQ  N+   K  +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQSSNEAKMKRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. ExPASy Swiss-Prot
Match: Q9SV72 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-24
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 14  RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 63
           RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 54  RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

[Close]

BLAST of MS001552 vs. ExPASy TrEMBL
Match: A0A6J1DR94 (uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023601 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.2e-29
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 2   QGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH 61
           QGKNKMLR SRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH
Sbjct: 52  QGKNKMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCH 111

Query: 62  R 63
           R
Sbjct: 112 R 112

[Close]

BLAST of MS001552 vs. ExPASy TrEMBL
Match: A0A061DUW0 (Stomagen OS=Theobroma cacao OX=3641 GN=TCM_002693 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQG N+      +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQGSNEAKMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. ExPASy TrEMBL
Match: A0A0B0MP24 (EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 OS=Gossypium arboreum OX=29729 GN=LOC108472911 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQ  N+   K  +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQSSNEAKMKRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. ExPASy TrEMBL
Match: A0A6J0ZIN1 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Herrania umbratica OX=108875 GN=LOC110409646 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQG N+      +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQGTNEAKTNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. ExPASy TrEMBL
Match: A0A5D2NA41 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G161600v1 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   LQGKNKMLRKSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVC 60
           LQ  N+   K  +RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHY+CVC
Sbjct: 47  LQSSNEAKMKRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC 106

Query: 61  HR 63
           HR
Sbjct: 107 HR 108

[Close]

BLAST of MS001552 vs. TAIR 10
Match: AT4G12970.1 (stomagen )

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-25
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 14  RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 63
           RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 54  RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

The following BLAST results are available for this feature:

BLAST of MS001552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156765.1	1.5e-28	98.36	uncharacterized protein LOC111023601 [Momordica charantia]	[more]
XP_007049616.1	6.5e-24	83.87	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X1 [Theobroma caca...	[more]
XP_017974533.1	6.5e-24	83.87	PREDICTED: uncharacterized protein LOC18612649 isoform X2 [Theobroma cacao]	[more]
XP_012490914.1	8.4e-24	83.87	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Gossypium raim...	[more]
XP_016709292.2	8.4e-24	83.87	EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Gossypium hirsutum] >XP_0...	[more]

BLAST of MS001552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SV72	3.9e-24	95.92	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of MS001552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DR94	7.2e-29	98.36	uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A061DUW0	3.1e-24	83.87	Stomagen OS=Theobroma cacao OX=3641 GN=TCM_002693 PE=4 SV=1	[more]
A0A0B0MP24	4.1e-24	83.87	EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 OS=Gossypium arboreum OX=2...	[more]
A0A6J0ZIN1	4.1e-24	83.87	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Herrania umbratica OX=108875 GN=LO...	[more]
A0A5D2NA41	4.1e-24	83.87	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G161600v1 P...	[more]

BLAST of MS001552 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12970.1	2.8e-25	95.92	stomagen	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044858	Stomagen, C-terminal domain	PFAM	PF16851	Stomagen	coord: 13..61 e-value: 2.8E-34 score: 116.9
IPR038572	Stomagen, C-terminal domain superfamily	GENE3D	2.20.25.390	Stomagen	coord: 18..62 e-value: 4.5E-32 score: 111.7
IPR031753	Stomagen	PANTHER	PTHR37239	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9	coord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001552.1	MS001552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000123	positive regulation of stomatal complex development