MS001468 (gene) Bitter gourd (TR) v1

Overview


Name	MS001468
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein RALF-like 19
Location	scaffold36: 4422151 .. 4422303 (+)
RNA-Seq Expression	MS001468
Synteny	MS001468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGGAAGTATCTGAGCTACGCGGCGCTGAAGATGAACGTCATCCCCTGCGGCGGCAGGGGCATGTCTTACTACGACTGCACCAAGCGCAAGAGAGCCAATCCTTACAGACGCTCCTGCCTCGCTATCCATGGCTGCGCTAGATTCACCGAT

mRNA sequence

AAGGGGAAGTATCTGAGCTACGCGGCGCTGAAGATGAACGTCATCCCCTGCGGCGGCAGGGGCATGTCTTACTACGACTGCACCAAGCGCAAGAGAGCCAATCCTTACAGACGCTCCTGCCTCGCTATCCATGGCTGCGCTAGATTCACCGAT

Coding sequence (CDS)

AAGGGGAAGTATCTGAGCTACGCGGCGCTGAAGATGAACGTCATCCCCTGCGGCGGCAGGGGCATGTCTTACTACGACTGCACCAAGCGCAAGAGAGCCAATCCTTACAGACGCTCCTGCCTCGCTATCCATGGCTGCGCTAGATTCACCGAT

Protein sequence

KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD

Homology

[Close]

BLAST of MS001468 vs. NCBI nr
Match: XP_022138617.1 (protein RALF-like 19 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 53  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 103

[Close]

BLAST of MS001468 vs. NCBI nr
Match: XP_022138618.1 (protein RALF-like 19 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 64  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 114

[Close]

BLAST of MS001468 vs. NCBI nr
Match: XP_022138616.1 (protein RALF-like 19 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 52  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 102

[Close]

BLAST of MS001468 vs. NCBI nr
Match: XP_022138431.1 (protein RALF-like 19 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 5.7e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           +GK+LSYAALK N+IPCGGRGMSYYDC KR +ANPYRRSCLAI GCARFTD
Sbjct: 58  RGKFLSYAALKKNIIPCGGRGMSYYDCAKRMKANPYRRSCLAITGCARFTD 108

[Close]

BLAST of MS001468 vs. NCBI nr
Match: XP_004148669.1 (protein RALF-like 19 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           K KYL Y AL+ N IPC  RG SYYDC KRK+ANPYRR C+AI GCARFTD
Sbjct: 62  KNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of MS001468 vs. ExPASy Swiss-Prot
Match: Q6NME6 (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-11
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 4   YLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFT 51
           Y+SY AL+ N +PC  RG SYYDC KRKRANPYRR C  I  C R T
Sbjct: 63  YISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of MS001468 vs. ExPASy Swiss-Prot
Match: Q9FZA0 (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-11
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARF 50
           +Y+ Y ALK N +PC  RG SYYDC KR+R NPYRR C AI  C R+
Sbjct: 62  RYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of MS001468 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-09
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           KY+SY AL+ N +PC  RG SYY+C +  +ANPY R C AI  C R
Sbjct: 71  KYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of MS001468 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.5e-09
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           +Y+SY AL+ N IPC  RG SYY+C +  +ANPY R C AI  C R
Sbjct: 92  RYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of MS001468 vs. ExPASy Swiss-Prot
Match: Q9MA62 (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-08
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           KY+SY A++ N +PC  RG SYY+C +  +ANPY R C  I  C R
Sbjct: 74  KYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

[Close]

BLAST of MS001468 vs. ExPASy TrEMBL
Match: A0A6J1CBM3 (protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009732 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 53  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 103

[Close]

BLAST of MS001468 vs. ExPASy TrEMBL
Match: A0A6J1CDH9 (protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009733 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 64  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 114

[Close]

BLAST of MS001468 vs. ExPASy TrEMBL
Match: A0A6J1CA84 (protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009731 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           KGKYLSYAALK N+IPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD
Sbjct: 52  KGKYLSYAALKKNIIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 102

[Close]

BLAST of MS001468 vs. ExPASy TrEMBL
Match: A0A6J1C9P3 (protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009604 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           +GK+LSYAALK N+IPCGGRGMSYYDC KR +ANPYRRSCLAI GCARFTD
Sbjct: 58  RGKFLSYAALKKNIIPCGGRGMSYYDCAKRMKANPYRRSCLAITGCARFTD 108

[Close]

BLAST of MS001468 vs. ExPASy TrEMBL
Match: A0A0A0KHU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   KGKYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFTD 52
           K KYL Y AL+ N IPC  RG SYYDC KRK+ANPYRR C+AI GCARFTD
Sbjct: 62  KNKYLGYDALRKNNIPCRHRGRSYYDCKKRKKANPYRRGCIAITGCARFTD 112

[Close]

BLAST of MS001468 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 )

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 4   YLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARFT 51
           Y+SY AL+ N +PC  RG SYYDC KRKRANPYRR C  I  C R T
Sbjct: 63  YISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYRQT 109

[Close]

BLAST of MS001468 vs. TAIR 10
Match: AT1G28270.1 (ralf-like 4 )

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-12
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCARF 50
           +Y+ Y ALK N +PC  RG SYYDC KR+R NPYRR C AI  C R+
Sbjct: 62  RYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of MS001468 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 )

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-10
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           KY+SY AL+ N +PC  RG SYY+C +  +ANPY R C AI  C R
Sbjct: 71  KYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of MS001468 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 )

HSP 1 Score: 60.5 bits (145), Expect = 4.7e-10
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           +Y+SY AL+ N IPC  RG SYY+C +  +ANPY R C AI  C R
Sbjct: 92  RYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of MS001468 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 )

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-09
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 3   KYLSYAALKMNVIPCGGRGMSYYDCTKRKRANPYRRSCLAIHGCAR 49
           KY+SY A++ N +PC  RG SYY+C +  +ANPY R C  I  C R
Sbjct: 74  KYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

The following BLAST results are available for this feature:

BLAST of MS001468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138617.1	1.4e-21	96.08	protein RALF-like 19 [Momordica charantia]	[more]
XP_022138618.1	1.4e-21	96.08	protein RALF-like 19 [Momordica charantia]	[more]
XP_022138616.1	1.4e-21	96.08	protein RALF-like 19 [Momordica charantia]	[more]
XP_022138431.1	5.7e-18	84.31	protein RALF-like 19 [Momordica charantia]	[more]
XP_004148669.1	3.2e-13	72.55	protein RALF-like 19 [Cucumis sativus]	[more]

BLAST of MS001468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NME6	1.4e-11	63.83	Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1	[more]
Q9FZA0	5.4e-11	59.57	Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1	[more]
Q8L9P8	3.8e-09	54.35	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
Q9LUS7	6.5e-09	54.35	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
Q9MA62	3.2e-08	50.00	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of MS001468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBM3	7.0e-22	96.08	protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009732 PE=3 SV=1	[more]
A0A6J1CDH9	7.0e-22	96.08	protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009733 PE=3 SV=1	[more]
A0A6J1CA84	7.0e-22	96.08	protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009731 PE=3 SV=1	[more]
A0A6J1C9P3	2.8e-18	84.31	protein RALF-like 19 OS=Momordica charantia OX=3673 GN=LOC111009604 PE=3 SV=1	[more]
A0A0A0KHU4	1.6e-13	72.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484570 PE=3 SV=1	[more]

BLAST of MS001468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33775.1	1.0e-12	63.83	ralf-like 19	[more]
AT1G28270.1	3.8e-12	59.57	ralf-like 4	[more]
AT4G15800.1	2.7e-10	54.35	ralf-like 33	[more]
AT3G16570.1	4.7e-10	54.35	rapid alkalinization factor 23	[more]
AT3G05490.1	2.3e-09	50.00	ralf-like 22	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 2..48 e-value: 7.9E-18 score: 65.2
None	No IPR available	PANTHER	PTHR33136:SF84	PROTEIN RALF-LIKE 19	coord: 2..50
None	No IPR available	PANTHER	PTHR33136	RAPID ALKALINIZATION FACTOR-LIKE	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001468.1	MS001468.1	mRNA