MS001451 (gene) Bitter gourd (TR) v1

Overview
NameMS001451
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 4245427 .. 4245627 (+)
RNA-Seq ExpressionMS001451
SyntenyMS001451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTGCGGCGGAAAGCTGTGCATGCTCTGTGTCTGCCTGATCGCGGTCGCCGTCGCCGTCGGATTGCTCTTCGGATTCGGAGTTTTGAAGGACGGCTTCCACAAGATCAAAGATAAAGTTGATTTCTGCGATGGACCTCTGTGCGGCGGCGGCTCCTCATTTCTAGGTTTTCTCTTCCGTAGATCTCCACTTTCTTTC

mRNA sequence

ATGTGCTGCGGCGGAAAGCTGTGCATGCTCTGTGTCTGCCTGATCGCGGTCGCCGTCGCCGTCGGATTGCTCTTCGGATTCGGAGTTTTGAAGGACGGCTTCCACAAGATCAAAGATAAAGTTGATTTCTGCGATGGACCTCTGTGCGGCGGCGGCTCCTCATTTCTAGGTTTTCTCTTCCGTAGATCTCCACTTTCTTTC

Coding sequence (CDS)

ATGTGCTGCGGCGGAAAGCTGTGCATGCTCTGTGTCTGCCTGATCGCGGTCGCCGTCGCCGTCGGATTGCTCTTCGGATTCGGAGTTTTGAAGGACGGCTTCCACAAGATCAAAGATAAAGTTGATTTCTGCGATGGACCTCTGTGCGGCGGCGGCTCCTCATTTCTAGGTTTTCTCTTCCGTAGATCTCCACTTTCTTTC

Protein sequence

MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSFLGFLFRRSPLSF
Homology
BLAST of MS001451 vs. NCBI nr
Match: XP_022159379.1 (uncharacterized protein LOC111025796 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSFLGFLF 60
          MCCGGKLCMLCVCLIAVAVAVGLLFGFGV KDGFHKIKDKVDFCDGPLC GGSSFLGFLF
Sbjct: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVFKDGFHKIKDKVDFCDGPLCXGGSSFLGFLF 60

Query: 61 RRSPLSF 68
          RRSPLSF
Sbjct: 61 RRSPLSF 67

BLAST of MS001451 vs. NCBI nr
Match: XP_008449006.1 (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 7.5e-18
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSF 56
          MCC GKLCMLC CLI V VA+GLLFGFGV KDGFHKIKDKVDFCDG LCGGG  F
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPF 55

BLAST of MS001451 vs. NCBI nr
Match: XP_038905566.1 (uncharacterized protein Os04g0629400 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGG 53
          MCC GK+CMLC CLI V VA+GLLFGFGV KDGFHKIKDKVD+CDG LCGGG
Sbjct: 1  MCCFGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDYCDGGLCGGG 52

BLAST of MS001451 vs. NCBI nr
Match: KAG7028302.1 (hypothetical protein SDJN02_09483, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSFLGFLF 60
           MCC GK+CM C CL+ VAVA+GLLFGFG+ KDGFHKIKDKVDFCDG LCG G  F     
Sbjct: 102 MCCFGKVCMFCSCLVLVAVAIGLLFGFGIFKDGFHKIKDKVDFCDGDLCGRGRPFFAAPP 161

Query: 61  RR 63
           RR
Sbjct: 162 RR 163

BLAST of MS001451 vs. NCBI nr
Match: KAG6596774.1 (hypothetical protein SDJN03_09954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSFLGFLF 60
           MCC GK+CM C CL+ VAVA+GLLFGFG+ KDGFHKIKDKVDFCDG LCG G  F     
Sbjct: 63  MCCFGKVCMFCSCLVLVAVAIGLLFGFGIFKDGFHKIKDKVDFCDGDLCGRGRPFFAAPP 122

Query: 61  RR 63
           RR
Sbjct: 123 RR 124

BLAST of MS001451 vs. ExPASy TrEMBL
Match: A0A6J1E285 (uncharacterized protein LOC111025796 OS=Momordica charantia OX=3673 GN=LOC111025796 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSFLGFLF 60
          MCCGGKLCMLCVCLIAVAVAVGLLFGFGV KDGFHKIKDKVDFCDGPLC GGSSFLGFLF
Sbjct: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVFKDGFHKIKDKVDFCDGPLCXGGSSFLGFLF 60

Query: 61 RRSPLSF 68
          RRSPLSF
Sbjct: 61 RRSPLSF 67

BLAST of MS001451 vs. ExPASy TrEMBL
Match: A0A1S3BL26 (uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGGSSF 56
          MCC GKLCMLC CLI V VA+GLLFGFGV KDGFHKIKDKVDFCDG LCGGG  F
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPF 55

BLAST of MS001451 vs. ExPASy TrEMBL
Match: A0A0A0L2S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGG 53
          MCC GK+CMLC CLI V VA+GLLFGFGV KDGFHKIKDKVDFCDG  CGGG
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGG 52

BLAST of MS001451 vs. ExPASy TrEMBL
Match: A0A6J1EWB7 (uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC111438773 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCDGPLCGGG 53
          MCC GK+CMLC CLI V VAVG LFGFGV KDGFHKIKDK DFCDG +CG G
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSG 52

BLAST of MS001451 vs. ExPASy TrEMBL
Match: I1JJM5 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDFCD---GPLCGGGSSFLG 59
          MCCGG++CMLC CL+ V +A+GLLFGFGV K GFHKIKD V FCD   G   GGG  F+G
Sbjct: 1  MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIG 60

BLAST of MS001451 vs. TAIR 10
Match: AT3G13275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1  MCCGGKLCMLCVCLIAVAVAVGLLFGFGVLKDGFHKIKDKVDF-CDGPL-CGGGSSFLGF 60
          MCC G++CMLC CL+ V +A+G LFGFGV KDGFHKI + +   CD    CGGG    G+
Sbjct: 1  MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGGLGRRGY 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159379.13.2e-2997.01uncharacterized protein LOC111025796 [Momordica charantia][more]
XP_008449006.17.5e-1883.64PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo][more]
XP_038905566.11.1e-1682.69uncharacterized protein Os04g0629400 [Benincasa hispida][more]
KAG7028302.11.4e-1670.97hypothetical protein SDJN02_09483, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6596774.11.4e-1670.97hypothetical protein SDJN03_09954, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E2851.6e-2997.01uncharacterized protein LOC111025796 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A1S3BL263.6e-1883.64uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=... [more]
A0A0A0L2S11.5e-1682.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1[more]
A0A6J1EWB71.3e-1578.85uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC1114387... [more]
I1JJM54.1e-1463.93Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G13275.18.5e-1254.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36753:SF2TRANSMEMBRANE PROTEINcoord: 1..59
NoneNo IPR availablePANTHERPTHR36753TRANSMEMBRANE PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001451.1MS001451.1mRNA