MS001360 (gene) Bitter gourd (TR) v1

Overview
NameMS001360
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 3538973 .. 3539158 (+)
RNA-Seq ExpressionMS001360
SyntenyMS001360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTAAACGACGACGCATCGAGGAAGGCGACGGGTTCGGCGCTGGGCCAGAAGCGGAGCCTTCCGTTCAGTAACACGACCATGGCCGTAGCTGGGCTGGTGGTGGTGGGCGCCATCGGCTACGTGTATTACGTCAACAGAACAAACTCTGCCAAAGATAATATTAACCAACGTCCTCCTCCT

mRNA sequence

ATGGCGTTAAACGACGACGCATCGAGGAAGGCGACGGGTTCGGCGCTGGGCCAGAAGCGGAGCCTTCCGTTCAGTAACACGACCATGGCCGTAGCTGGGCTGGTGGTGGTGGGCGCCATCGGCTACGTGTATTACGTCAACAGAACAAACTCTGCCAAAGATAATATTAACCAACGTCCTCCTCCT

Coding sequence (CDS)

ATGGCGTTAAACGACGACGCATCGAGGAAGGCGACGGGTTCGGCGCTGGGCCAGAAGCGGAGCCTTCCGTTCAGTAACACGACCATGGCCGTAGCTGGGCTGGTGGTGGTGGGCGCCATCGGCTACGTGTATTACGTCAACAGAACAAACTCTGCCAAAGATAATATTAACCAACGTCCTCCTCCT

Protein sequence

MALNDDASRKATGSALGQKRSLPFSNTTMAVAGLVVVGAIGYVYYVNRTNSAKDNINQRPPP
Homology
[Close]
BLAST of MS001360 vs. NCBI nr
Match: KGN62996.1 (hypothetical protein Csa_021855 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 33/60 (55.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MALNDDASRKATGSALGQKRSLPFSNTTMAVAGLVVVGAIGYVYYVNRTNSAKDNINQRP 60
          M +ND+ASRK TG  L +KR+LPFSNTT+A+AG +++G IGY+ YVN++ +  DNI+++P
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLG-IGYMVYVNKSKNNNDNIHRQP 59

[Close]
BLAST of MS001360 vs. NCBI nr
Match: KAA0064885.1 (hypothetical protein E6C27_scaffold82G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MALND-DASRKATGSALGQKRSLPFSNTTMAVAGLVVVGAIGYVYYVNRTNSAKDNINQR 60
          M LND +ASRK TG  L +KR+LPFSNTTMA+AG +++G IGY+ YVN++ +  D I+++
Sbjct: 1  MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLG-IGYMVYVNKSRNNNDTIHRQ 60

[Close]
BLAST of MS001360 vs. ExPASy TrEMBL
Match: A0A0A0LSP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 33/60 (55.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MALNDDASRKATGSALGQKRSLPFSNTTMAVAGLVVVGAIGYVYYVNRTNSAKDNINQRP 60
          M +ND+ASRK TG  L +KR+LPFSNTT+A+AG +++G IGY+ YVN++ +  DNI+++P
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLG-IGYMVYVNKSKNNNDNIHRQP 59

[Close]
BLAST of MS001360 vs. ExPASy TrEMBL
Match: A0A5A7VG71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001980 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MALND-DASRKATGSALGQKRSLPFSNTTMAVAGLVVVGAIGYVYYVNRTNSAKDNINQR 60
          M LND +ASRK TG  L +KR+LPFSNTTMA+AG +++G IGY+ YVN++ +  D I+++
Sbjct: 1  MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLG-IGYMVYVNKSRNNNDTIHRQ 60

The following BLAST results are available for this feature:
BLAST of MS001360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62996.14.5e-0955.00hypothetical protein Csa_021855 [Cucumis sativus][more]
KAA0064885.18.5e-0855.74hypothetical protein E6C27_scaffold82G001980 [Cucumis melo var. makuwa][more]
BLAST of MS001360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS001360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSP02.2e-0955.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1[more]
A0A5A7VG714.1e-0855.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MS001360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001360.1MS001360.1mRNA