MS001348 (gene) Bitter gourd (TR) v1

Overview
NameMS001348
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionethylene-responsive transcription factor ERF003-like
Locationscaffold36: 3405348 .. 3405921 (+)
RNA-Seq ExpressionMS001348
SyntenyMS001348
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGACCACAACAGCGATATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCATTACTGTAAGTCCCCCTAATTAATTTCTTCTCAATTCTCACCTCTGTTCTACACTCCTAATTTGCTCTGCCTCTGCCTCAGGAAAACCAGAATTTGGCTGGGCACTTTCGAGACAGCGGAAGACGCCGCGAGAGCCTACGACGAAGCCGCCCGCCTAATGTGCGGCCCCAGAGCCAGAACCAACTTCCCCTTCAACACAAACAACTCCACTTCCTCCTCTTCCTCCAAACTCCTCTCCCCCAATTTGACCGCCAAGCTCCACCGCTGCTACATGGCGTCTCTCCATTTGACGCACCCGCCGCCGCAGAAACCGGCCGCCCACCGCGAGGAGAAAAGAAGGGCAGCGACGGCAGGCGGCGAGAAGGAGGGGGCGGCGGCGGAGAGCTGGCAGCAGCCGTTCGAGGCGCTGGAAGAGGCTCACATCGAACAGATGATTGAGGAATTGGTTCATTACGGGTCCGTTGAGCTGTGCTCTGTGGTCCCATCTCAGGCGTTT

mRNA sequence

ATGGCCAGACCACAACAGCGATATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCATTACTGAAAACCAGAATTTGGCTGGGCACTTTCGAGACAGCGGAAGACGCCGCGAGAGCCTACGACGAAGCCGCCCGCCTAATGTGCGGCCCCAGAGCCAGAACCAACTTCCCCTTCAACACAAACAACTCCACTTCCTCCTCTTCCTCCAAACTCCTCTCCCCCAATTTGACCGCCAAGCTCCACCGCTGCTACATGGCGTCTCTCCATTTGACGCACCCGCCGCCGCAGAAACCGGCCGCCCACCGCGAGGAGAAAAGAAGGGCAGCGACGGCAGGCGGCGAGAAGGAGGGGGCGGCGGCGGAGAGCTGGCAGCAGCCGTTCGAGGCGCTGGAAGAGGCTCACATCGAACAGATGATTGAGGAATTGGTTCATTACGGGTCCGTTGAGCTGTGCTCTGTGGTCCCATCTCAGGCGTTT

Coding sequence (CDS)

ATGGCCAGACCACAACAGCGATATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCATTACTGAAAACCAGAATTTGGCTGGGCACTTTCGAGACAGCGGAAGACGCCGCGAGAGCCTACGACGAAGCCGCCCGCCTAATGTGCGGCCCCAGAGCCAGAACCAACTTCCCCTTCAACACAAACAACTCCACTTCCTCCTCTTCCTCCAAACTCCTCTCCCCCAATTTGACCGCCAAGCTCCACCGCTGCTACATGGCGTCTCTCCATTTGACGCACCCGCCGCCGCAGAAACCGGCCGCCCACCGCGAGGAGAAAAGAAGGGCAGCGACGGCAGGCGGCGAGAAGGAGGGGGCGGCGGCGGAGAGCTGGCAGCAGCCGTTCGAGGCGCTGGAAGAGGCTCACATCGAACAGATGATTGAGGAATTGGTTCATTACGGGTCCGTTGAGCTGTGCTCTGTGGTCCCATCTCAGGCGTTT

Protein sequence

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGGEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVPSQAF
Homology
[Close]
BLAST of MS001348 vs. NCBI nr
Match: XP_022996843.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 8.5e-63
Identity = 134/166 (80.72%), Postives = 142/166 (85.54%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNS-TSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHR---EEKRRAA 120
           TNFPFN N+S +SSSSSKLLS NLTAKLHRCYMASLHLT+P PQKPAA+     EK+RA 
Sbjct: 61  TNFPFNANDSNSSSSSSKLLSANLTAKLHRCYMASLHLTNPSPQKPAANNPMTAEKKRAV 120

Query: 121 TAGGEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
                 +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSVVP
Sbjct: 121 ------KKTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVP 160

[Close]
BLAST of MS001348 vs. NCBI nr
Match: XP_022962279.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 132/162 (81.48%), Postives = 139/162 (85.80%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+S +SSSSKLLS NLTAKLHRCYMASLHLT+P PQKPA    EK+RA     
Sbjct: 61  TNFPFNANDS-NSSSSKLLSANLTAKLHRCYMASLHLTNPLPQKPA----EKKRAV---- 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
             +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSVVP
Sbjct: 121 --KMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVP 151

[Close]
BLAST of MS001348 vs. NCBI nr
Match: XP_023546750.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 131/162 (80.86%), Postives = 139/162 (85.80%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+S +SSSSKLLS NLTAKLHRCYMASLHLT+P PQKPA    EK+RA     
Sbjct: 61  TNFPFNANDS-NSSSSKLLSANLTAKLHRCYMASLHLTNPSPQKPA----EKKRAV---- 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
             +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSV+P
Sbjct: 121 --KMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVLP 151

[Close]
BLAST of MS001348 vs. NCBI nr
Match: KAG7029485.1 (Ethylene-responsive transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-61
Identity = 131/162 (80.86%), Postives = 139/162 (85.80%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+S +SSSSKLLS NLTAKLHRCYMASLHLT+P PQKPA    EK+RA     
Sbjct: 61  TNFPFNANDS-NSSSSKLLSANLTAKLHRCYMASLHLTNPLPQKPA----EKKRAV---- 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
             +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSV+P
Sbjct: 121 --KMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVLP 151

[Close]
BLAST of MS001348 vs. NCBI nr
Match: XP_023538461.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 5.7e-59
Identity = 129/170 (75.88%), Postives = 136/170 (80.00%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVR+RHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYD AARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAH-REEKRRAATAG 120
           TNFPFN N+   S+S +L S NLTAKLHRCYMASLHLT+P PQKPA     E  R A A 
Sbjct: 61  TNFPFNAND---SNSFELFSANLTAKLHRCYMASLHLTNPSPQKPAMPVTTENERVAAAA 120

Query: 121 GEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVV---PSQAF 167
             K G       QPFEALEE  IEQMIEEL+HYGSVELCSV+   PSQAF
Sbjct: 121 AVKRGQTEMVAHQPFEALEEDDIEQMIEELIHYGSVELCSVMPPPPSQAF 167

[Close]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-53
Identity = 115/185 (62.16%), Postives = 132/185 (71.35%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFP+N  N+  +SSSKLLS  LTAKLH+CYMASL +T     K    + + + A +   
Sbjct: 61  TNFPYNP-NAIPTSSSKLLSATLTAKLHKCYMASLQMT-----KQTQTQTQTQTARSQSA 120

Query: 121 EKEGAAAE---------------------SWQQPFEALEEAHIEQMIEELVHYGSVELCS 165
           + +G  A                      + QQ F  LEE HIEQMIEEL+HYGS+ELCS
Sbjct: 121 DSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCS 179

[Close]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-39
Identity = 89/139 (64.03%), Postives = 104/139 (74.82%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFP+N  N++ SSSSKLLS  L AKLHRCYMASL +T     +P++  E  R  A+   
Sbjct: 61  TNFPYNP-NASQSSSSKLLSATLIAKLHRCYMASLQMT-----RPSSLPEAPRIIASPNN 120

Query: 121 EKEGAAAESWQQPFEALEE 140
             +G  A++   P +  +E
Sbjct: 121 AVKGIGADAMLLPKKREQE 133

[Close]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NTNNS----------------TSSSSSKLLSPNLTAKLHRC 91
           N NN+                +SS+SS  LS  L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 NTNNSTSS-------SSSKLLSPNLTAKLHR 90
            +N ++S        S K LS  L AKL +
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 95

[Close]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.3e-21
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NTNNSTSSSSSKLLSPNLTAK 87
            +   S     + SP ++ K
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPK 85

[Close]
BLAST of MS001348 vs. ExPASy TrEMBL
Match: A0A6J1KC60 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111491967 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.1e-63
Identity = 134/166 (80.72%), Postives = 142/166 (85.54%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNS-TSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHR---EEKRRAA 120
           TNFPFN N+S +SSSSSKLLS NLTAKLHRCYMASLHLT+P PQKPAA+     EK+RA 
Sbjct: 61  TNFPFNANDSNSSSSSSKLLSANLTAKLHRCYMASLHLTNPSPQKPAANNPMTAEKKRAV 120

Query: 121 TAGGEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
                 +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSVVP
Sbjct: 121 ------KKTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVP 160

[Close]
BLAST of MS001348 vs. ExPASy TrEMBL
Match: A0A6J1HGM1 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111462773 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.9e-62
Identity = 132/162 (81.48%), Postives = 139/162 (85.80%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+S +SSSSKLLS NLTAKLHRCYMASLHLT+P PQKPA    EK+RA     
Sbjct: 61  TNFPFNANDS-NSSSSKLLSANLTAKLHRCYMASLHLTNPLPQKPA----EKKRAV---- 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVP 163
             +    E+  QPF ALEE HIEQMIEEL+HYGSVELCSVVP
Sbjct: 121 --KMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVP 151

[Close]
BLAST of MS001348 vs. ExPASy TrEMBL
Match: A0A6J1KP69 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111496339 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 124/172 (72.09%), Postives = 136/172 (79.07%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQ+RYRGVR+RHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYD AARLMCGPRAR
Sbjct: 1   MARPQRRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+   S+S KL S NLTAKLHRCYMASLHL +P PQKPA     ++    A  
Sbjct: 61  TNFPFNAND---SNSFKLFSANLTAKLHRCYMASLHLKNPSPQKPAMPVTMEKERVAAAA 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVV------PSQAF 167
            K+G    +  QPFEALEE  IEQMIEEL+HYGS+ELCSV+      PSQAF
Sbjct: 121 VKKGQTETAAHQPFEALEENDIEQMIEELIHYGSIELCSVMPPPPPPPSQAF 169

[Close]
BLAST of MS001348 vs. ExPASy TrEMBL
Match: A0A1S3BBS3 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103488339 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.8e-58
Identity = 134/172 (77.91%), Postives = 138/172 (80.23%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN+N+S +SSSSKLLS NLTAKLHRC MASLH      QKPA HR      A   G
Sbjct: 61  TNFPFNSNDS-NSSSSKLLSANLTAKLHRCCMASLHF-----QKPATHRFNS--GADVAG 120

Query: 121 EK----EG-AAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVV-PSQAF 167
            K    EG    E   QPF ALEE HIEQMIEEL+HYGSVELCSVV PSQAF
Sbjct: 121 IKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF 164

[Close]
BLAST of MS001348 vs. ExPASy TrEMBL
Match: A0A6J1GI88 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111454444 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 128/168 (76.19%), Postives = 136/168 (80.95%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQRYRGVR+RHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYD AARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFPFN N+   S+S KL S NLTAKLHRCYMASLHLT+P PQ       E+  AA   G
Sbjct: 61  TNFPFNAND---SNSFKLFSANLTAKLHRCYMASLHLTNPSPQ--VTTENERVAAAVKKG 120

Query: 121 EKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVV--PSQAF 167
           + E AA     QPFEALEE  IEQMIEEL+HYGSVELCSV+  PSQAF
Sbjct: 121 QTEMAA----HQPFEALEEDDIEQMIEELIHYGSVELCSVMPPPSQAF 159

[Close]
BLAST of MS001348 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54
Identity = 115/185 (62.16%), Postives = 132/185 (71.35%), Query Frame = 0 

Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGG 120
           TNFP+N  N+  +SSSKLLS  LTAKLH+CYMASL +T     K    + + + A +   
Sbjct: 61  TNFPYNP-NAIPTSSSKLLSATLTAKLHKCYMASLQMT-----KQTQTQTQTQTARSQSA 120

Query: 121 EKEGAAAE---------------------SWQQPFEALEEAHIEQMIEELVHYGSVELCS 165
           + +G  A                      + QQ F  LEE HIEQMIEEL+HYGS+ELCS
Sbjct: 121 DSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCS 179

[Close]
BLAST of MS001348 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NTNNS----------------TSSSSSKLLSPNLTAKLHRC 91
           N NN+                +SS+SS  LS  L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]
BLAST of MS001348 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 NTNNSTSS-------SSSKLLSPNLTAKLHR 90
            +N ++S        S K LS  L AKL +
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 95

[Close]
BLAST of MS001348 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-22
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 NTNNSTSSSSSKLLSPNLTAK 87
            +   S     + SP ++ K
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPK 85

[Close]
BLAST of MS001348 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-20
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0 

Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPF 65
          +++RGVRQR WGSWVSEIRHPLL   +WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 NTNNSTSS-------SSSKLLSPNLTAKLHR 90
            +N ++S        S K LS  L AKL +
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 92

The following BLAST results are available for this feature:
BLAST of MS001348 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022996843.18.5e-6380.72ethylene-responsive transcription factor ERF003-like [Cucurbita maxima][more]
XP_022962279.11.2e-6181.48ethylene-responsive transcription factor ERF003-like [Cucurbita moschata][more]
XP_023546750.11.6e-6180.86ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo... [more]
KAG7029485.12.7e-6180.86Ethylene-responsive transcription factor [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_023538461.15.7e-5975.88ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo... [more]
BLAST of MS001348 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94AW51.7e-5362.16Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ... [more]
P161463.0e-3964.03Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1[more]
Q9XI333.9e-2661.39Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q3E9581.7e-2160.44Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702... [more]
Q9LFN78.3e-2161.73Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702... [more]
BLAST of MS001348 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KC604.1e-6380.72ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1HGM15.9e-6281.48ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36... [more]
A0A6J1KP693.0e-5872.09ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661... [more]
A0A1S3BBS36.8e-5877.91ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1GI881.2e-5776.19ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36... [more]
BLAST of MS001348 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25190.11.2e-5462.16Integrase-type DNA-binding superfamily protein [more]
AT1G15360.12.7e-2761.39Integrase-type DNA-binding superfamily protein [more]
AT5G25390.21.2e-2260.44Integrase-type DNA-binding superfamily protein [more]
AT5G11190.15.9e-2261.73Integrase-type DNA-binding superfamily protein [more]
AT5G25390.15.5e-2058.24Integrase-type DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 8..19
score: 66.97
coord: 30..46
score: 70.91
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 7..70
e-value: 7.0E-42
score: 155.1
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 7..56
e-value: 6.1E-12
score: 45.6
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 7..64
score: 21.140162
IPR001471AP2/ERF domainCDDcd00018AP2coord: 6..64
e-value: 1.23114E-32
score: 108.898
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 6..66
e-value: 1.1E-26
score: 94.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..130
NoneNo IPR availablePANTHERPTHR31194:SF112ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003coord: 1..101
NoneNo IPR availablePANTHERPTHR31194:SF112ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003coord: 122..160
NoneNo IPR availablePANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 1..101
coord: 122..160
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 7..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001348.1MS001348.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity