MS001347 (gene) Bitter gourd (TR) v1

Overview


Name	MS001347
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ethylene-responsive transcription factor ERF003-like
Location	scaffold36: 3398831 .. 3399518 (+)
RNA-Seq Expression	MS001347
Synteny	MS001347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCCCCCCAACCTCACTTCCTTTACAAACTTCCCAAAAACCCCTCTCAAAGAAAAGAAAAATTCCCCATTGCCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCACTGGGGCTCCTGGGTCTCGGAAATCCGCCACCCTTTATTGTGAGTAGTTAATCCCTACGAAAGTTATAAATTTGAATCTTCGCTCATTTGCAAAAGAAATATATAACTAATGTAGTTTTTGGCAATGTAGGAAGACTAGAATTTGGCTAGGCACATTCGAGACGGCGGAGGATGCGGCGCGGGCCTACGACGAAGCTGCACGGCTGATGTGCGGTCCAAGGGCAAGGACTAACTTCCCTTACGACGCGTCTCTCTCTCGTTCCTCCTCTTCTAGACTCCTCTCTGCCACCTTGACCGCCAAGCTCCACCGCTGCTACATGGCATCGCTGCAGCTAACCAAGCAATCCTCCGTCGTCCATCGACCTCTGATCAACCCAATCCAAACCGATGCTACTGTGGCCTCTAGCATTGCCCCGGCCAACCGAGTGGCACCCGAAGCGACCCCGATGAAAGTCAAACTGGAGAGCGGCGATTGCGGGCAGCCGTTGATGATTGAGATTCTGGATGATGACCACATAGAACAAATGATCGAGGAGCTGCTTGATTACGGGGAAATTGAGCTCCGCACG

mRNA sequence

TCCTCCCCCCAACCTCACTTCCTTTACAAACTTCCCAAAAACCCCTCTCAAAGAAAAGAAAAATTCCCCATTGCCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCACTGGGGCTCCTGGGTCTCGGAAATCCGCCACCCTTTATTGAAGACTAGAATTTGGCTAGGCACATTCGAGACGGCGGAGGATGCGGCGCGGGCCTACGACGAAGCTGCACGGCTGATGTGCGGTCCAAGGGCAAGGACTAACTTCCCTTACGACGCGTCTCTCTCTCGTTCCTCCTCTTCTAGACTCCTCTCTGCCACCTTGACCGCCAAGCTCCACCGCTGCTACATGGCATCGCTGCAGCTAACCAAGCAATCCTCCGTCGTCCATCGACCTCTGATCAACCCAATCCAAACCGATGCTACTGTGGCCTCTAGCATTGCCCCGGCCAACCGAGTGGCACCCGAAGCGACCCCGATGAAAGTCAAACTGGAGAGCGGCGATTGCGGGCAGCCGTTGATGATTGAGATTCTGGATGATGACCACATAGAACAAATGATCGAGGAGCTGCTTGATTACGGGGAAATTGAGCTCCGCACG

Coding sequence (CDS)

TCCTCCCCCCAACCTCACTTCCTTTACAAACTTCCCAAAAACCCCTCTCAAAGAAAAGAAAAATTCCCCATTGCCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCACTGGGGCTCCTGGGTCTCGGAAATCCGCCACCCTTTATTGAAGACTAGAATTTGGCTAGGCACATTCGAGACGGCGGAGGATGCGGCGCGGGCCTACGACGAAGCTGCACGGCTGATGTGCGGTCCAAGGGCAAGGACTAACTTCCCTTACGACGCGTCTCTCTCTCGTTCCTCCTCTTCTAGACTCCTCTCTGCCACCTTGACCGCCAAGCTCCACCGCTGCTACATGGCATCGCTGCAGCTAACCAAGCAATCCTCCGTCGTCCATCGACCTCTGATCAACCCAATCCAAACCGATGCTACTGTGGCCTCTAGCATTGCCCCGGCCAACCGAGTGGCACCCGAAGCGACCCCGATGAAAGTCAAACTGGAGAGCGGCGATTGCGGGCAGCCGTTGATGATTGAGATTCTGGATGATGACCACATAGAACAAATGATCGAGGAGCTGCTTGATTACGGGGAAATTGAGCTCCGCACG

Protein sequence

SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSVVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELRT

Homology

[Close]

BLAST of MS001347 vs. NCBI nr
Match: XP_022131493.1 (ethylene-responsive transcription factor ERF003-like [Momordica charantia])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG 60
           SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG
Sbjct: 28  SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG 87

Query: 61  TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ 120
           TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ
Sbjct: 88  TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ 147

Query: 121 LTKQSSVVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD 180
           LTKQSS VHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD
Sbjct: 148 LTKQSSAVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD 207

Query: 181 HIEQMIEELLDYGEIELRT 200
           HIEQMIEELLDYGEIELRT
Sbjct: 208 HIEQMIEELLDYGEIELRT 226

[Close]

BLAST of MS001347 vs. NCBI nr
Match: XP_008445253.1 (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 8.3e-73
Identity = 153/204 (75.00%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 1   SSPQPHFLYKLPKNPSQRKEKFPI----AMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR 60
           S+  P   + +P +       FP+     MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR
Sbjct: 12  STKTPPLSFPIPTSNIHNTLNFPLTLFFTMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR 71

Query: 61  IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM 120
           IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM
Sbjct: 72  IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM 131

Query: 121 ASLQLTKQ-SSVVHRPLINPIQTDATVASSIAPANRVAPE-ATPMKVKLESGDCGQPLMI 180
           ASLQLTKQ SS   RP  + I+TD +VAS IAP  RV  +  T  KVK+ES DCG+PLMI
Sbjct: 132 ASLQLTKQSSSAARRPQTDVIRTDFSVASGIAPGERVEVDGTTAKKVKMESVDCGEPLMI 191

Query: 181 EILDDDHIEQMIEELLDYGEIELR 199
           E+LDDDHI+QMIEELLDYG IELR
Sbjct: 192 EMLDDDHIQQMIEELLDYGGIELR 215

[Close]

BLAST of MS001347 vs. NCBI nr
Match: KAA0064899.1 (ethylene-responsive transcription factor ERF003-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-72
Identity = 148/175 (84.57%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ SS   RP  + I+TD +VAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 146 SIAPANRVAPE-ATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELR 199
            IAP  RV  +  T  KVK+ES DCG+PLMIE+LDDDHI+QMIEELLDYG IELR
Sbjct: 121 GIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of MS001347 vs. NCBI nr
Match: XP_038886168.1 (ethylene-responsive transcription factor ERF003-like [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-71
Identity = 148/177 (83.62%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ SS   RP     QTD ++AS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRP-----QTDFSMAS 120

Query: 146 SIAPANRVAPE--ATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELRT 200
            IAP  RV  +  +T  K+KLES DCG+PLMIEILDDDHI+QMIEELLDYG IELR+
Sbjct: 121 GIAPIERVEADTTSTAKKIKLESVDCGEPLMIEILDDDHIQQMIEELLDYGGIELRS 172

[Close]

BLAST of MS001347 vs. NCBI nr
Match: XP_004138708.1 (ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN62981.1 hypothetical protein Csa_021824 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 145/175 (82.86%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQ SS   RP  + I+TD +VAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 146 SIAPANRVAPEA-TPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELR 199
            IAP  RV  +  T  KVK+ES DC +PLMIE+LDDDHI+QMIEELLDYG IELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of MS001347 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-53
Identity = 114/174 (65.52%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSVVHRPLINPIQTDAT--VA 145
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+    +      Q+  +  V 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 146 SSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIEL 198
           ++ +  NR   E T  ++K E G+         L++DHIEQMIEELL YG IEL
Sbjct: 121 ANESHLNRGVTETT--EIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIEL 172

[Close]

BLAST of MS001347 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-42
Identity = 100/169 (59.17%), Postives = 117/169 (69.23%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           M RPQQR+RG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSVVHRPLINPIQTDAT---- 145
           TNFPY+ + S+SSSS+LLSATL AKLHRCYMASLQ+T+ SS+   P I     +A     
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSSLPEAPRIIASPNNAVKGIG 120

Query: 146 VASSIAPANRVAPEATP------MKVKLESGDCGQPLMIEILDDDHIEQ 185
             + + P  R   E          KVK+E   C Q    + L++DHI Q
Sbjct: 121 ADAMLLPKKREQEEQETGGNLDFKKVKVE---CSQ--QFKPLEEDHIAQ 164

[Close]

BLAST of MS001347 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.1e-25
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 91  D-----------------ASLSRSSSSRLLSATLTAKLHRC 115
           +                 +++S S+SS  LS+ L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of MS001347 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-21
Identity = 56/93 (60.22%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 91  DASLSRSS----------SSRLLSATLTAKLHR 114
             S   S           S + LS  L AKL +
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of MS001347 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 77/184 (41.85%), Postives = 99/184 (53.80%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 91  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSS---VVHRPLI 150
             S   +S        S + LS  L AKL + C     Y+  L+L   SS   V  +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 151 NPIQTDATVASSIAPANRVAP----EATPMKVKLESGDCGQPLMIEILDDDHIE-QMIEE 193
           +    +      +       P    E   MKV+ E          ++ +DD +  QMIEE
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNE----------DVQEDDQMAMQMIEE 178

[Close]

BLAST of MS001347 vs. ExPASy TrEMBL
Match: A0A6J1BTI8 (ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3673 GN=LOC111004679 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.1e-106
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG 60
           SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG
Sbjct: 28  SSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLG 87

Query: 61  TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ 120
           TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ
Sbjct: 88  TFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQ 147

Query: 121 LTKQSSVVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD 180
           LTKQSS VHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD
Sbjct: 148 LTKQSSAVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDD 207

Query: 181 HIEQMIEELLDYGEIELRT 200
           HIEQMIEELLDYGEIELRT
Sbjct: 208 HIEQMIEELLDYGEIELRT 226

[Close]

BLAST of MS001347 vs. ExPASy TrEMBL
Match: A0A1S3BD40 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103488338 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.0e-73
Identity = 153/204 (75.00%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 1   SSPQPHFLYKLPKNPSQRKEKFPI----AMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR 60
           S+  P   + +P +       FP+     MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR
Sbjct: 12  STKTPPLSFPIPTSNIHNTLNFPLTLFFTMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTR 71

Query: 61  IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM 120
           IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM
Sbjct: 72  IWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYM 131

Query: 121 ASLQLTKQ-SSVVHRPLINPIQTDATVASSIAPANRVAPE-ATPMKVKLESGDCGQPLMI 180
           ASLQLTKQ SS   RP  + I+TD +VAS IAP  RV  +  T  KVK+ES DCG+PLMI
Sbjct: 132 ASLQLTKQSSSAARRPQTDVIRTDFSVASGIAPGERVEVDGTTAKKVKMESVDCGEPLMI 191

Query: 181 EILDDDHIEQMIEELLDYGEIELR 199
           E+LDDDHI+QMIEELLDYG IELR
Sbjct: 192 EMLDDDHIQQMIEELLDYGGIELR 215

[Close]

BLAST of MS001347 vs. ExPASy TrEMBL
Match: A0A5A7VHF4 (Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002150 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 148/175 (84.57%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ SS   RP  + I+TD +VAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 146 SIAPANRVAPE-ATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELR 199
            IAP  RV  +  T  KVK+ES DCG+PLMIE+LDDDHI+QMIEELLDYG IELR
Sbjct: 121 GIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of MS001347 vs. ExPASy TrEMBL
Match: A0A0A0LSL8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382540 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.9e-71
Identity = 145/175 (82.86%), Postives = 155/175 (88.57%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQ SS   RP  + I+TD +VAS
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 146 SIAPANRVAPEA-TPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELR 199
            IAP  RV  +  T  KVK+ES DC +PLMIE+LDDDHI+QMIEELLDYG IELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of MS001347 vs. ExPASy TrEMBL
Match: A0A6J1K9A3 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111491817 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.3e-67
Identity = 141/175 (80.57%), Postives = 148/175 (84.57%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ-SSVVHRPLINPIQTDATVAS 145
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQ SS   RP  + I+TD +V S
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120

Query: 146 SIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELRT 200
            IAP    A   +  KVKLES D G+P     LDDDHI+QMIEELLDYG IELR+
Sbjct: 121 GIAPVGVEADVTSTKKVKLESVDRGEP-----LDDDHIQQMIEELLDYGGIELRS 170

[Close]

BLAST of MS001347 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-54
Identity = 114/174 (65.52%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 26  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 85
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 86  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSVVHRPLINPIQTDAT--VA 145
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+    +      Q+  +  V 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120

Query: 146 SSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIEL 198
           ++ +  NR   E T  ++K E G+         L++DHIEQMIEELL YG IEL
Sbjct: 121 ANESHLNRGVTETT--EIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIEL 172

[Close]

BLAST of MS001347 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-26
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 91  D-----------------ASLSRSSSSRLLSATLTAKLHRC 115
           +                 +++S S+SS  LS+ L+AKL +C
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC 105

[Close]

BLAST of MS001347 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22
Identity = 56/93 (60.22%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 91  DASLSRSS----------SSRLLSATLTAKLHR 114
             S   S           S + LS  L AKL +
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of MS001347 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-22
Identity = 77/184 (41.85%), Postives = 99/184 (53.80%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 91  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSS---VVHRPLI 150
             S   +S        S + LS  L AKL + C     Y+  L+L   SS   V  +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 151 NPIQTDATVASSIAPANRVAP----EATPMKVKLESGDCGQPLMIEILDDDHIE-QMIEE 193
           +    +      +       P    E   MKV+ E          ++ +DD +  QMIEE
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNE----------DVQEDDQMAMQMIEE 178

[Close]

BLAST of MS001347 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-19
Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 31  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 90
           ++FRGVRQR WGSWVSEIRHPLL   +WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 91  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSS---VVHRPLI 150
             S   +S        S + LS  L AKL + C     Y+  L+L   SS   V  +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 151 NPIQTDATVASSIAPANRVAP----EATPMKVKLESGDCGQPLMIEILDDDHIE-QMIEE 193
           +    +      +       P    E   MKV+ E          ++ +DD +  QMIEE
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNE----------DVQEDDQMAMQMIEE 175

The following BLAST results are available for this feature:

BLAST of MS001347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131493.1	1.3e-105	99.50	ethylene-responsive transcription factor ERF003-like [Momordica charantia]	[more]
XP_008445253.1	8.3e-73	75.00	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
KAA0064899.1	2.4e-72	84.57	ethylene-responsive transcription factor ERF003-like protein [Cucumis melo var. ...	[more]
XP_038886168.1	2.0e-71	83.62	ethylene-responsive transcription factor ERF003-like [Benincasa hispida]	[more]
XP_004138708.1	1.0e-70	82.86	ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN62981.1 hy...	[more]

BLAST of MS001347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	1.5e-53	65.52	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	1.2e-42	59.17	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	5.1e-25	59.41	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LFN7	3.4e-21	60.22	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q3E958	1.3e-20	41.85	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS001347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BTI8	6.1e-106	99.50	ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3...	[more]
A0A1S3BD40	4.0e-73	75.00	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7VHF4	1.2e-72	84.57	Ethylene-responsive transcription factor ERF003-like protein OS=Cucumis melo var...	[more]
A0A0A0LSL8	4.9e-71	82.86	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382540 PE=...	[more]
A0A6J1K9A3	7.3e-67	80.57	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of MS001347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	1.1e-54	65.52	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	3.6e-26	59.41	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	2.4e-22	60.22	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	9.3e-22	41.85	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	4.3e-19	40.76	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 55..71 score: 70.91 coord: 33..44 score: 61.21
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 32..95 e-value: 2.0E-39 score: 147.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 32..81 e-value: 2.3E-11 score: 43.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 32..89 score: 20.718536
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 31..91 e-value: 2.1746E-35 score: 116.987
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 31..91 e-value: 5.6E-26 score: 92.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31194:SF112	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003	coord: 26..198
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 26..198
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 32..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001347.1	MS001347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity