MS001339 (gene) Bitter gourd (TR) v1

Overview
NameMS001339
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA ligase
Locationscaffold36: 3345545 .. 3345916 (+)
RNA-Seq ExpressionMS001339
SyntenyMS001339
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCCGATTTTCATCACTCTTCCTCCTTCGCTCACAAGCTCAAGTCCTCCATCGGCTGCTTCCGCGCCTCCGACCAGCCGTCGACCAAATCGCCGTGTTCCTGGTTCAAATCTACGGCCGCTGAATTCCCCGACTTACTTGACCGCTGCCGCTATCTCGTCGCTCGGATCGGTCGCGGCGGCCGGAGAAGGTACCACGCCTCCCCTGACTTTACCTACGATTCTTCCAGCTACGCGCTTAATTTTGAGGACGATTCCCGCTACGACGATGAATTTCCGCTCAGAAATTTCGCCGCCAGGTTGCCGCGCCTTCCGGCAGCCAAATTTGCCGGATCTCAAGCCGGAGTCAGTACCGTTGCTGCGTGTAGT

mRNA sequence

ATGTTGGCCGATTTTCATCACTCTTCCTCCTTCGCTCACAAGCTCAAGTCCTCCATCGGCTGCTTCCGCGCCTCCGACCAGCCGTCGACCAAATCGCCGTGTTCCTGGTTCAAATCTACGGCCGCTGAATTCCCCGACTTACTTGACCGCTGCCGCTATCTCGTCGCTCGGATCGGTCGCGGCGGCCGGAGAAGGTACCACGCCTCCCCTGACTTTACCTACGATTCTTCCAGCTACGCGCTTAATTTTGAGGACGATTCCCGCTACGACGATGAATTTCCGCTCAGAAATTTCGCCGCCAGGTTGCCGCGCCTTCCGGCAGCCAAATTTGCCGGATCTCAAGCCGGAGTCAGTACCGTTGCTGCGTGTAGT

Coding sequence (CDS)

ATGTTGGCCGATTTTCATCACTCTTCCTCCTTCGCTCACAAGCTCAAGTCCTCCATCGGCTGCTTCCGCGCCTCCGACCAGCCGTCGACCAAATCGCCGTGTTCCTGGTTCAAATCTACGGCCGCTGAATTCCCCGACTTACTTGACCGCTGCCGCTATCTCGTCGCTCGGATCGGTCGCGGCGGCCGGAGAAGGTACCACGCCTCCCCTGACTTTACCTACGATTCTTCCAGCTACGCGCTTAATTTTGAGGACGATTCCCGCTACGACGATGAATTTCCGCTCAGAAATTTCGCCGCCAGGTTGCCGCGCCTTCCGGCAGCCAAATTTGCCGGATCTCAAGCCGGAGTCAGTACCGTTGCTGCGTGTAGT

Protein sequence

MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTVAACS
Homology
BLAST of MS001339 vs. NCBI nr
Match: XP_022131639.1 (uncharacterized protein LOC111004768 [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR 60
           MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR 60

Query: 61  GGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV 120
           G RRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV
Sbjct: 61  GSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV 120

Query: 121 AACS 125
           AACS
Sbjct: 121 AACS 124

BLAST of MS001339 vs. NCBI nr
Match: XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32
Identity = 83/132 (62.88%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60
           ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 119
           RYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DDEFP RNF AR P     R+P
Sbjct: 61  RYLLARIAR-RRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVP 120

BLAST of MS001339 vs. NCBI nr
Match: XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 3.4e-32
Identity = 83/132 (62.88%), Postives = 91/132 (68.94%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60
           ML  FHHS +FA KLKSS  CF         D PS   TKSPCSWFKST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 119
           RYL+ARI R  R+RY AS DFTYDSSSYALNF+DD R DDEFP R+F AR P     R P
Sbjct: 61  RYLLARIAR-RRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAP 120

BLAST of MS001339 vs. NCBI nr
Match: XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 3.4e-32
Identity = 83/132 (62.88%), Postives = 91/132 (68.94%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60
           ML  FHHS +FA KLKSS  CF         D PS   T SPCSWFKST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 119
           RYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DDEFP RNF AR P     R+P
Sbjct: 61  RYLLARIAR-RRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVP 120

BLAST of MS001339 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 0

Query: 1   MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDR 60
           ML + ++SS  SF HKLKSSI CFRA         D+ S +SP S  KSTA+E  +L   
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRYDDEFPLRNFAARLPRLP 107
           CR LVARIGR  RRRYH S DF YD SSYALNFED+ +RYDD+FP+R+FA+RLP  P
Sbjct: 61  CRNLVARIGR-SRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

BLAST of MS001339 vs. ExPASy TrEMBL
Match: A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR 60
           MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR 60

Query: 61  GGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV 120
           G RRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV
Sbjct: 61  GSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKFAGSQAGVSTV 120

Query: 121 AACS 125
           AACS
Sbjct: 121 AACS 124

BLAST of MS001339 vs. ExPASy TrEMBL
Match: A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 83/132 (62.88%), Postives = 92/132 (69.70%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60
           ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 119
           RYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DDEFP RNF AR P     R+P
Sbjct: 61  RYLLARIAR-RRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVP 120

BLAST of MS001339 vs. ExPASy TrEMBL
Match: A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 83/132 (62.88%), Postives = 91/132 (68.94%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60
           ML  FHHS +FA KLKSS  CF         D PS   TKSPCSWFKST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 119
           RYL+ARI R  R+RY AS DFTYDSSSYALNF+DD R DDEFP R+F AR P     R P
Sbjct: 61  RYLLARIAR-RRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAP 120

BLAST of MS001339 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.0e-23
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 0

Query: 1   MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDR 60
           ML + ++SS  SF HKLKSSI CFRA         D+ S +SP S  KSTA+E  +L   
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRYDDEFPLRNFAARLPRLP 107
           CR LVARIGR  RRRYH S DF YD SSYALNFED+ +RYDD+FP+R+FA+RLP  P
Sbjct: 61  CRNLVARIGR-SRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

BLAST of MS001339 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 1   MLADFHHSSSFAHKLKSSIGCFR--------ASDQPSTKSPCSWFKSTAAEFPDLLDRCR 60
           M+ + +H  SF  KLKSSI CFR        + D  S ++P S  KS AAEFP++   CR
Sbjct: 1   MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCR 60

Query: 61  YLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDS-RYDDEFPLRNFAARLPRLP 107
            LVARIGR  RRRYH S DF YD SSYALNFED+  R DDEFP+R+FA+RLP  P
Sbjct: 61  NLVARIGR-CRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 114

BLAST of MS001339 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 0

Query: 13  HKLKSSIGCFRAS------------DQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGR 72
           H+++S I C  A+            +Q + +SP  W KSTA E  +L DRCR + +RI  
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKV 79

Query: 73  GGR----------RRYHASP----DFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLP 110
             R            +H S     DF+YD  SYALNFED+ R DD+    NF ARLP+ P
Sbjct: 80  TCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLPQSP 139

BLAST of MS001339 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-08
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 0

Query: 6   HHSSSFAHKLKSSIGCFRASDQPSTKSP-CSWFKSTAAEFPDLL----DRCRYLVARIGR 65
           HH  +    L SS      + + ST+SP     K+ +      L    ++C+ L+ R+G 
Sbjct: 31  HHHDNIPDDLPSS----PVTTEKSTQSPHGGGMKTKSPRLTRTLSKSHEKCKSLIHRMGG 90

Query: 66  G-------GRRRYHASPDFTYDSSSYALNFE--DDSRYDDEFPLRNFAARLPRLP--AAK 121
           G       G+     + DF YD SSYALNF+  D+    D FPLRNF+ARLP  P  +AK
Sbjct: 91  GVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNIDRFPLRNFSARLPHSPPSSAK 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131639.11.7e-6399.19uncharacterized protein LOC111004768 [Momordica charantia][more]
XP_022962228.11.5e-3262.88uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet... [more]
XP_022997531.13.4e-3262.88uncharacterized protein LOC111492424 [Cucurbita maxima][more]
XP_023546798.13.4e-3262.88uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo][more]
XP_022138148.11.9e-2258.97uncharacterized protein LOC111009386 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BQU18.1e-6499.19uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1HE787.4e-3362.88uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A6J1K7R11.6e-3262.88uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424... [more]
A0A6J1CC839.0e-2358.97uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1J1H35.8e-2256.52uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417... [more]
Match NameE-valueIdentityDescription
AT5G11070.14.2e-1238.21unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G35090.18.1e-0835.11unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 11..108
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 11..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001339.1MS001339.1mRNA