MS001335 (gene) Bitter gourd (TR) v1

Overview


Name	MS001335
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S11
Location	scaffold36: 3330766 .. 3331260 (+)
RNA-Seq Expression	MS001335
Synteny	MS001335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACATATATTGATAAGAAGTGTCCATTTACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTCAGACGTAATTATCTGCACTATGTGAAGAAATACCAAAGGTGAGACACTACTTTCTCGAATTTTAGTTGGTTGATTTATATCCTATCTACCAATGAGAATGCTAAGGAGGTTAATTTTTATTCAGGTACGAGAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTTATACATGGACTTCACATGCCTCTGCTGCTTTTAGTCTTGCAACTTTGATTTTAGTTACTTAACATCGCCTATCTTTTGCAGGCCGTTGTCGAAGACAGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCTACAGCTGGTAAAAAGGCTTTCACAGGAATT

mRNA sequence

GGAACATATATTGATAAGAAGTGTCCATTTACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTCAGACGTAATTATCTGCACTATGTGAAGAAATACCAAAGGTACGAGAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTTATACATGGACTTCACATGCCTCTGCTGCTTTTAGTCTTGCAACTTTTTAGTTACTTAACATCGCCTATCTTTTGCAGGCCGTTGTCGAAGACAGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCTACAGCTGGTAAAAAGGCTTTCACAGGAATT

Coding sequence (CDS)

GGAACATATATTGATAAGAAGTGTCCATTTACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTCAGACGTAATTATCTGCACTATGTGAAGAAATACCAAAGGTACGAGAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTTATACATGGACTTCACATGCCTCTGCTGCTTTTAGTCTTGCAACTTTTTAGTTACTTAACATCGCCTATCTTTTGCAGGCCGTTGTCGAAGACAGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCTACAGCTGGTAAAAAGGCTTTCACAGGAATT

Protein sequence

GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

Homology

[Close]

BLAST of MS001335 vs. NCBI nr
Match: KAG6409515.1 (hypothetical protein SASPL_127555 [Salvia splendens])

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-51
Identity = 105/136 (77.21%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTG VSIRGRILAGTCHSAKM+RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGNVSIRGRILAGTCHSAKMMRTIIVRRNYLHWVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMP-LLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKV 120
           I+PCFRVKEGDHV IGQCR +   +    +LL +Q     +  +FCRPLSKTVRFNVLKV
Sbjct: 112 ISPCFRVKEGDHVTIGQCRLVPQTNYQFFMLLDIQNMELTSFCVFCRPLSKTVRFNVLKV 171

Query: 121 IPAGSSTAGKKAFTGI 136
           IPAGSS  GKKAFT +
Sbjct: 172 IPAGSSGLGKKAFTAM 187

[Close]

BLAST of MS001335 vs. NCBI nr
Match: XP_022132263.1 (40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_022961674.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_023002533.1 40S ribosomal protein S11 [Cucurbita maxima] >XP_023537513.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >XP_023545624.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >KAG6598560.1 40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020399.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 108/135 (80.00%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTGI
Sbjct: 172 PAGSSTAGKKAFTGI 159

[Close]

BLAST of MS001335 vs. NCBI nr
Match: KAG7029498.1 (40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 108/135 (80.00%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 50  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 109

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 110 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 157

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTGI
Sbjct: 170 PAGSSTAGKKAFTGI 157

[Close]

BLAST of MS001335 vs. NCBI nr
Match: XP_022996631.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 107/135 (79.26%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 77  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 136

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 137 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 184

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTG+
Sbjct: 197 PAGSSTAGKKAFTGV 184

[Close]

BLAST of MS001335 vs. NCBI nr
Match: KAG6585484.1 (40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 107/134 (79.85%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 158

Query: 121 PAGSSTAGKKAFTG 135
           PAGSSTAGKKAFTG
Sbjct: 172 PAGSSTAGKKAFTG 158

[Close]

BLAST of MS001335 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-49
Identity = 99/133 (74.44%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           I+PCFRVKEGDHVIIGQ                           CRPLSKTVRFNV+KVI
Sbjct: 112 ISPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVVKVI 157

Query: 121 PAGSSTAGKKAFT 134
           PAGS+ AGKKAFT
Sbjct: 172 PAGSAAAGKKAFT 157

[Close]

BLAST of MS001335 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 4.5e-49
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAG+S  GKKAFTG+
Sbjct: 172 PAGASAFGKKAFTGV 159

[Close]

BLAST of MS001335 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-48
Identity = 99/135 (73.33%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSS   KKAFT I
Sbjct: 172 PAGSSGGVKKAFTAI 159

[Close]

BLAST of MS001335 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-48
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           I+P FRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 ISPAFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSS+  KKAFTG+
Sbjct: 172 PAGSSSGAKKAFTGM 159

[Close]

BLAST of MS001335 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.0e-48
Identity = 97/136 (71.32%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDH+IIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDHIIIGQ---------------------------CRPLSKTVRFNVLKVI 160

Query: 121 PAGSSTA-GKKAFTGI 136
           PAGSS++ GKKAFTG+
Sbjct: 172 PAGSSSSFGKKAFTGM 160

[Close]

BLAST of MS001335 vs. ExPASy TrEMBL
Match: A0A6J1HEQ3 (40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51
Identity = 108/135 (80.00%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTGI
Sbjct: 172 PAGSSTAGKKAFTGI 159

[Close]

BLAST of MS001335 vs. ExPASy TrEMBL
Match: A0A6J1KTV2 (40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51
Identity = 108/135 (80.00%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTGI
Sbjct: 172 PAGSSTAGKKAFTGI 159

[Close]

BLAST of MS001335 vs. ExPASy TrEMBL
Match: A0A6J1BVS5 (40S ribosomal protein S11 OS=Momordica charantia OX=3673 GN=LOC111005160 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51
Identity = 108/135 (80.00%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTGI
Sbjct: 172 PAGSSTAGKKAFTGI 159

[Close]

BLAST of MS001335 vs. ExPASy TrEMBL
Match: A0A6J1K5C0 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.5e-51
Identity = 107/135 (79.26%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 77  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 136

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           IAPCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 137 IAPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 184

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSSTAGKKAFTG+
Sbjct: 197 PAGSSTAGKKAFTGV 184

[Close]

BLAST of MS001335 vs. ExPASy TrEMBL
Match: A0A498HXN9 (Ubiquitin-like domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029058 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.5e-50
Identity = 104/135 (77.04%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTG VSIRGRILAGTCHSAKM +TIIVRRNYLHY+KKYQRYEKRHSNIPAH
Sbjct: 715 GTYIDKKCPFTGNVSIRGRILAGTCHSAKMNKTIIVRRNYLHYIKKYQRYEKRHSNIPAH 774

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDHV IGQCR     H          FS+ TSP+F RPLSKT RFNVLKV 
Sbjct: 775 VSPCFRVKEGDHVTIGQCRLATCAHF--------RFSFCTSPMF-RPLSKTKRFNVLKVT 834

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSS  GKKAF GI
Sbjct: 835 PAGSSGTGKKAFAGI 840

[Close]

BLAST of MS001335 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-50
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDHVIIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDHVIIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAG+S  GKKAFTG+
Sbjct: 172 PAGASAFGKKAFTGV 159

[Close]

BLAST of MS001335 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-49
Identity = 97/136 (71.32%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGDH+IIGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDHIIIGQ---------------------------CRPLSKTVRFNVLKVI 160

Query: 121 PAGSSTA-GKKAFTGI 136
           PAGSS++ GKKAFTG+
Sbjct: 172 PAGSSSSFGKKAFTGM 160

[Close]

BLAST of MS001335 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 95/135 (70.37%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH
Sbjct: 52  GTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAH 111

Query: 61  IAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSKTVRFNVLKVI 120
           ++PCFRVKEGD V IGQ                           CRPLSKTVRFNVLKVI
Sbjct: 112 VSPCFRVKEGDRVTIGQ---------------------------CRPLSKTVRFNVLKVI 159

Query: 121 PAGSSTAGKKAFTGI 136
           PAGSS+ GKKAFTG+
Sbjct: 172 PAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of MS001335 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6409515.1	6.1e-51	77.21	hypothetical protein SASPL_127555 [Salvia splendens]	[more]
XP_022132263.1	1.0e-50	80.00	40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal pr...	[more]
KAG7029498.1	1.0e-50	80.00	40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022996631.1	1.3e-50	79.26	40S ribosomal protein S11-like [Cucurbita maxima]	[more]
KAG6585484.1	3.0e-50	79.85	40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS001335 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25460	2.6e-49	74.44	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
P42733	4.5e-49	72.59	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]
Q9M5M1	1.0e-48	73.33	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P17093	2.9e-48	72.59	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P16181	5.0e-48	71.32	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]

BLAST of MS001335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEQ3	5.0e-51	80.00	40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=...	[more]
A0A6J1KTV2	5.0e-51	80.00	40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1	[more]
A0A6J1BVS5	5.0e-51	80.00	40S ribosomal protein S11 OS=Momordica charantia OX=3673 GN=LOC111005160 PE=3 SV...	[more]
A0A6J1K5C0	6.5e-51	79.26	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 ...	[more]
A0A498HXN9	5.5e-50	77.04	Ubiquitin-like domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029...	[more]

BLAST of MS001335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23740.1	3.2e-50	72.59	ribosomal protein S11-beta	[more]
AT3G48930.1	3.5e-49	71.32	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G30800.1	2.3e-48	70.37	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 70..80 score: 51.82 coord: 37..60 score: 37.33
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 23..79 e-value: 7.9E-18 score: 64.4
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..80
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 105..134
None	No IPR available	GENE3D	2.40.50.1000		coord: 103..135 e-value: 1.4E-7 score: 33.2
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..81 e-value: 2.2E-45 score: 156.2
None	No IPR available	PANTHER	PTHR10744:SF37	BNAA06G38660D PROTEIN	coord: 1..80
None	No IPR available	PANTHER	PTHR10744:SF37	BNAA06G38660D PROTEIN	coord: 105..134
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 1..21 e-value: 1.0E-10 score: 41.8
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 17..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001335.1	MS001335.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome