MS001325 (gene) Bitter gourd (TR) v1

Overview


Name	MS001325
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold36: 3274201 .. 3274791 (-)
RNA-Seq Expression	MS001325
Synteny	MS001325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCAATGGAGCTCCAACTTGGCCTCGCTCTTCCCCTTCACACTCAAACCCTCAAACCTAAGCCTAAGCCTAAGCCTGCTAATTCTCCACGCTCTACAAACCCCCTTTCCCACACATTGCCTTTGCCTTTGCTCTCTTGGAACCACAACCCCAACGACGAAGATGAACACAACAACCCCACACCCACACACTTCTCCACTCTTCACCAGTGAGTACAAACTTAACTAAACTAAACAACCCTCTTTTACATTACTTTTAAATTTTACGTTTTTACACGTTTTTAAAAGTTTCTGTTGTGAGGGACGTACAATATGTTCATTATATTGCATTGATGACATGATGATAGGGAGGATGAGGATGAAGACAAGAACCGGGTAGTGGGGTGGCCGCCCGTCGAGTCATGGAGGACCAAGGCGTTTCACTGCCGCCCTCACCTGCCGCCGCCGCCGCTGAATTGCCGTCGTCCAGTAGCAGGACATCGCAGTTTGTTCGTGAAGGTGAAAATGGAGGGTGTTGCAATAACGAGGAAACTTGATCTCGGCCTCTATCACTCTCATAACTCCCTCAAAAATGCCATAATCTCCATGTTC

mRNA sequence

TTTTCAATGGAGCTCCAACTTGGCCTCGCTCTTCCCCTTCACACTCAAACCCTCAAACCTAAGCCTAAGCCTAAGCCTGCTAATTCTCCACGCTCTACAAACCCCCTTTCCCACACATTGCCTTTGCCTTTGCTCTCTTGGAACCACAACCCCAACGACGAAGATGAACACAACAACCCCACACCCACACACTTCTCCACTCTTCACCAGGAGGATGAGGATGAAGACAAGAACCGGGTAGTGGGGTGGCCGCCCGTCGAGTCATGGAGGACCAAGGCGTTTCACTGCCGCCCTCACCTGCCGCCGCCGCCGCTGAATTGCCGTCGTCCAGTAGCAGGACATCGCAGTTTGTTCGTGAAGGTGAAAATGGAGGGTGTTGCAATAACGAGGAAACTTGATCTCGGCCTCTATCACTCTCATAACTCCCTCAAAAATGCCATAATCTCCATGTTC

Coding sequence (CDS)

TTTTCAATGGAGCTCCAACTTGGCCTCGCTCTTCCCCTTCACACTCAAACCCTCAAACCTAAGCCTAAGCCTAAGCCTGCTAATTCTCCACGCTCTACAAACCCCCTTTCCCACACATTGCCTTTGCCTTTGCTCTCTTGGAACCACAACCCCAACGACGAAGATGAACACAACAACCCCACACCCACACACTTCTCCACTCTTCACCAGGAGGATGAGGATGAAGACAAGAACCGGGTAGTGGGGTGGCCGCCCGTCGAGTCATGGAGGACCAAGGCGTTTCACTGCCGCCCTCACCTGCCGCCGCCGCCGCTGAATTGCCGTCGTCCAGTAGCAGGACATCGCAGTTTGTTCGTGAAGGTGAAAATGGAGGGTGTTGCAATAACGAGGAAACTTGATCTCGGCCTCTATCACTCTCATAACTCCCTCAAAAATGCCATAATCTCCATGTTC

Protein sequence

FSMELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

Homology

[Close]

BLAST of MS001325 vs. NCBI nr
Match: XP_022131637.1 (auxin-responsive protein IAA29-like [Momordica charantia])

HSP 1 Score: 309.3 bits (791), Expect = 1.8e-80
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 62
           MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP
Sbjct: 1   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 60

Query: 63  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL---PPPPLNCRRPVAGHRSLFV 122
           THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL   PPPPLNCRRPVAGHRSLFV
Sbjct: 61  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPPPPLNCRRPVAGHRSLFV 120

Query: 123 KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
           KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
Sbjct: 121 KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152

[Close]

BLAST of MS001325 vs. NCBI nr
Match: XP_022962174.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 8.6e-30
Identity = 82/149 (55.03%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 62
           MELQLGL+LPLH    +          PR  N L  T  LPLLSWN  P D+D   +P  
Sbjct: 1   MELQLGLSLPLHNYAFE---------HPRIGNELPQT--LPLLSWNDKPKDDDGSPHPEG 60

Query: 63  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVK 122
           THFST+  + EDE+KN  VGWPP+E+WR KA    P  P    N      G  SLFVKVK
Sbjct: 61  THFSTI--QKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVK 120

Query: 123 MEGVAITRKLDLGLYHSHNSLKNAIISMF 152
           MEGVAI RKLDL LYHSHNSLK A+I+MF
Sbjct: 121 MEGVAIARKLDLRLYHSHNSLKTALIAMF 136

[Close]

BLAST of MS001325 vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo] >KAA0064917.1 auxin-responsive protein IAA29-like [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEH 62
           MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ 
Sbjct: 1   MELQLGLSLPLHNH---PNIHCKPAGG-FEHHPLFVIENELPQTLPLLSWNDKPKDEDDP 60

Query: 63  NNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPV------ 122
           ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH     PP  ++ RRP+      
Sbjct: 61  HHPKGTHFCNI--QKKDEEKKQAVGWPPIESWRKKAFHWHTQ-PPQTIDNRRPIVADHQS 120

Query: 123 ---AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
               G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Sbjct: 121 NQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMF 156

[Close]

BLAST of MS001325 vs. NCBI nr
Match: KAG6598565.1 (Auxin-induced protein AUX28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-29
Identity = 82/149 (55.03%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 62
           MELQLGL+LPLH   L+          PR  N L  T  LPLLSWN  P D+D   +   
Sbjct: 1   MELQLGLSLPLHNYALE---------HPRIGNELPQT--LPLLSWNDKPKDDDGSPHAGG 60

Query: 63  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVK 122
           THFST+  + EDE+KN  VGWPP+E+WR KA    P  P    N      G  SLFVKVK
Sbjct: 61  THFSTI--QKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVK 120

Query: 123 MEGVAITRKLDLGLYHSHNSLKNAIISMF 152
           MEGVAI RKLDL LYHSHNSLK A+I+MF
Sbjct: 121 MEGVAIARKLDLRLYHSHNSLKTALIAMF 136

[Close]

BLAST of MS001325 vs. NCBI nr
Match: XP_038886196.1 (auxin-responsive protein IAA29-like [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-29
Identity = 83/162 (51.23%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHN 62
           MELQLGL LP H         P   + P   +P  + + LP  LPLLSWN  P D+D+  
Sbjct: 1   MELQLGLPLPFHNH-------PNIHHKPAFQDPFIIGNQLPQTLPLLSWNDKPKDQDDPP 60

Query: 63  NPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVA------ 122
           +P  THFS +  + +DE+K   VGWPP+ESWR K FH +P  PP     RRPV       
Sbjct: 61  HPRGTHFSNI--QKKDEEKKEAVGWPPIESWRKKVFHWQPQ-PPQTAENRRPVVADQSSN 120

Query: 123 ---GHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
              G  SLFVKVKMEGVAI RKLDL LYHSH SLK A+I+MF
Sbjct: 121 QNDGQNSLFVKVKMEGVAIARKLDLRLYHSHQSLKTALIAMF 152

[Close]

BLAST of MS001325 vs. ExPASy Swiss-Prot
Match: Q93WC4 (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-10
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 44  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK----------- 103
           L + N  PN+EDE  +P  +  S ++  D++E+ + VVGWPPV++   K           
Sbjct: 63  LFALNGQPNEEDE--DPLESESSIVY--DDEEENSEVVGWPPVKTCMIKYGSYHHRHIRN 122

Query: 104 AFHCRPH-----LPPPPLNCRRP------------VAGHRSLFVKVKMEGVAITRKLDLG 152
             HC  H     +     N   P            ++   S++VKVKM+GVAI RK+D+ 
Sbjct: 123 HHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDIK 182

[Close]

BLAST of MS001325 vs. ExPASy Swiss-Prot
Match: P93830 (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 77  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLG 136
           K +VVGWPPV S+R              ++C++   G   + FVKV M+G    RK+DL 
Sbjct: 80  KAQVVGWPPVRSYRKNVM----------VSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLR 139

Query: 137 LYHSHNSLKNAIISMF 152
           +Y S++ L NA+ +MF
Sbjct: 140 MYKSYDELSNALSNMF 145

[Close]

BLAST of MS001325 vs. ExPASy Swiss-Prot
Match: P0C133 (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA31 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.2e-07
Identity = 32/84 (38.10%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 77  KNRVVGWPPVESWRTKAFH----CRPHLPPPPLNC-----RRPVAGHRSLFVKVKMEGVA 136
           K +VVGWPPV S+R              PPP         +  VAG   LFVKV M+G  
Sbjct: 51  KAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAP 110

Query: 137 ITRKLDLGLYHSHNSLKNAIISMF 152
             RK+DL +Y  +  L+ A+ +MF
Sbjct: 111 YLRKIDLKVYKGYRELREALEAMF 134

[Close]

BLAST of MS001325 vs. ExPASy Swiss-Prot
Match: Q8LQ74 (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA6 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 26/77 (33.77%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 80  VVGWPPVESWRTK--AFHCRPHLPPPP---LNCRRPVAGHRSLFVKVKMEGVAITRKLDL 139
           VVGWPP+ S+R    +     H P P     N +  +   ++  VK+ M+G+ I RK+DL
Sbjct: 176 VVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235

Query: 140 GLYHSHNSLKNAIISMF 152
             Y+S++ L +A+  +F
Sbjct: 236 AAYNSYDGLSSAVKQLF 252

[Close]

BLAST of MS001325 vs. ExPASy Swiss-Prot
Match: Q9LG86 (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 80  VVGWPPVESWR----TKAFHCRPHLPPPPLN-------CRRPVAGHRSLFVKVKMEGVAI 139
           VVGWPPV S+R    + +       PPPP +         +     + +FVK+ M+GV I
Sbjct: 71  VVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPI 130

Query: 140 TRKLDLGLYHSHNSLKNAIISMF 152
            RK+DL  Y  +  L  A+  +F
Sbjct: 131 GRKVDLAAYGGYAQLSAAVDKLF 153

[Close]

BLAST of MS001325 vs. ExPASy TrEMBL
Match: A0A6J1BRK7 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111004766 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 8.8e-81
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 62
           MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP
Sbjct: 1   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 60

Query: 63  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL---PPPPLNCRRPVAGHRSLFV 122
           THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL   PPPPLNCRRPVAGHRSLFV
Sbjct: 61  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPPPPLNCRRPVAGHRSLFV 120

Query: 123 KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
           KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
Sbjct: 121 KVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152

[Close]

BLAST of MS001325 vs. ExPASy TrEMBL
Match: A0A6J1HG86 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462707 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30
Identity = 82/149 (55.03%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTP 62
           MELQLGL+LPLH    +          PR  N L  T  LPLLSWN  P D+D   +P  
Sbjct: 1   MELQLGLSLPLHNYAFE---------HPRIGNELPQT--LPLLSWNDKPKDDDGSPHPEG 60

Query: 63  THFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVK 122
           THFST+  + EDE+KN  VGWPP+E+WR KA    P  P    N      G  SLFVKVK
Sbjct: 61  THFSTI--QKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVK 120

Query: 123 MEGVAITRKLDLGLYHSHNSLKNAIISMF 152
           MEGVAI RKLDL LYHSHNSLK A+I+MF
Sbjct: 121 MEGVAIARKLDLRLYHSHNSLKTALIAMF 136

[Close]

BLAST of MS001325 vs. ExPASy TrEMBL
Match: A0A5A7VD13 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002350 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.4e-30
Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEH 62
           MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ 
Sbjct: 1   MELQLGLSLPLHNH---PNIHCKPAGG-FEHHPLFVIENELPQTLPLLSWNDKPKDEDDP 60

Query: 63  NNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPV------ 122
           ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH     PP  ++ RRP+      
Sbjct: 61  HHPKGTHFCNI--QKKDEEKKQAVGWPPIESWRKKAFHWHTQ-PPQTIDNRRPIVADHQS 120

Query: 123 ---AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
               G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Sbjct: 121 NQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMF 156

[Close]

BLAST of MS001325 vs. ExPASy TrEMBL
Match: A0A1S3BCX7 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.4e-30
Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEH 62
           MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ 
Sbjct: 1   MELQLGLSLPLHNH---PNIHCKPAGG-FEHHPLFVIENELPQTLPLLSWNDKPKDEDDP 60

Query: 63  NNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPV------ 122
           ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH     PP  ++ RRP+      
Sbjct: 61  HHPKGTHFCNI--QKKDEEKKQAVGWPPIESWRKKAFHWHTQ-PPQTIDNRRPIVADHQS 120

Query: 123 ---AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
               G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Sbjct: 121 NQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMF 156

[Close]

BLAST of MS001325 vs. ExPASy TrEMBL
Match: A0A0A0LPM6 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 83/161 (51.55%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 3   MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHN 62
           MELQLGL+LPLH+    P    KPA      +   L + LP  LPLLSWN  P DED+ +
Sbjct: 1   MELQLGLSLPLHSH---PNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPH 60

Query: 63  NPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPV------- 122
           +P  THF  +  + +DE+K + VGWPP+ESWR KAF      PP  +  RRP        
Sbjct: 61  HPRGTHFCNI--QKKDEEKKQAVGWPPIESWRKKAFDWHTQ-PPQTIENRRPAVADQSNQ 120

Query: 123 -AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF 152
             G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+++MF
Sbjct: 121 NGGRNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALLTMF 155

[Close]

BLAST of MS001325 vs. TAIR 10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29 )

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-11
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 44  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK----------- 103
           L + N  PN+EDE  +P  +  S ++  D++E+ + VVGWPPV++   K           
Sbjct: 63  LFALNGQPNEEDE--DPLESESSIVY--DDEEENSEVVGWPPVKTCMIKYGSYHHRHIRN 122

Query: 104 AFHCRPH-----LPPPPLNCRRP------------VAGHRSLFVKVKMEGVAITRKLDLG 152
             HC  H     +     N   P            ++   S++VKVKM+GVAI RK+D+ 
Sbjct: 123 HHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDIK 182

[Close]

BLAST of MS001325 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 77  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLG 136
           K +VVGWPPV S+R              ++C++   G   + FVKV M+G    RK+DL 
Sbjct: 80  KAQVVGWPPVRSYRKNVM----------VSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLR 139

Query: 137 LYHSHNSLKNAIISMF 152
           +Y S++ L NA+ +MF
Sbjct: 140 MYKSYDELSNALSNMF 145

[Close]

BLAST of MS001325 vs. TAIR 10
Match: AT4G14550.1 (indole-3-acetic acid inducible 14 )

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 43/148 (29.05%), Postives = 63/148 (42.57%), Query Frame = 0


Query: 4   ELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPT 63
           E +L L LP  T+T++   K    N        S T+ L L   ++     D + N  P 
Sbjct: 5   ETELCLGLPGGTETVESPAKSGVGNK----RGFSETVDLKLNLQSNKQGHVDLNTNGAPK 64

Query: 64  HFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKM 123
             + L    +   K +VVGWPPV ++R        +             G    FVKV M
Sbjct: 65  EKTFLKDPSKPPAKAQVVGWPPVRNYRKNVM---ANQKSGEAEEAMSSGGGTVAFVKVSM 124

Query: 124 EGVAITRKLDLGLYHSHNSLKNAIISMF 152
           +G    RK+DL +Y S+  L +A+  MF
Sbjct: 125 DGAPYLRKVDLKMYTSYKDLSDALAKMF 145

[Close]

BLAST of MS001325 vs. TAIR 10
Match: AT2G22670.1 (indoleacetic acid-induced protein 8 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/75 (36.00%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 77  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGL 136
           K +VVGWPP+ S+R              ++ +    G   LFVKV M+G    RK+DL  
Sbjct: 163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGK---PGLGVLFVKVSMDGAPYLRKVDLRT 222

Query: 137 YHSHNSLKNAIISMF 152
           Y S+  L +A+  MF
Sbjct: 223 YTSYQQLSSALEKMF 234

[Close]

BLAST of MS001325 vs. TAIR 10
Match: AT2G22670.2 (indoleacetic acid-induced protein 8 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/75 (36.00%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 77  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGL 136
           K +VVGWPP+ S+R              ++ +    G   LFVKV M+G    RK+DL  
Sbjct: 163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGK---PGLGVLFVKVSMDGAPYLRKVDLRT 222

Query: 137 YHSHNSLKNAIISMF 152
           Y S+  L +A+  MF
Sbjct: 223 YTSYQQLSSALEKMF 234

The following BLAST results are available for this feature:

BLAST of MS001325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131637.1	1.8e-80	98.03	auxin-responsive protein IAA29-like [Momordica charantia]	[more]
XP_022962174.1	8.6e-30	55.03	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
XP_008445232.2	1.1e-29	52.76	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo] >KAA0064917.1 auxi...	[more]
KAG6598565.1	3.3e-29	55.03	Auxin-induced protein AUX28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038886196.1	3.3e-29	51.23	auxin-responsive protein IAA29-like [Benincasa hispida]	[more]

BLAST of MS001325 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WC4	7.9e-10	33.09	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=...	[more]
P93830	2.1e-07	38.16	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=...	[more]
P0C133	6.2e-07	38.10	Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA31...	[more]
Q8LQ74	1.2e-05	33.77	Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA6 P...	[more]
Q9LG86	1.5e-05	33.73	Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA2 P...	[more]

BLAST of MS001325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRK7	8.8e-81	98.03	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111004766 PE=3 SV=...	[more]
A0A6J1HG86	4.2e-30	55.03	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111462707 PE=3 SV=1	[more]
A0A5A7VD13	5.4e-30	52.76	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3BCX7	5.4e-30	52.76	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1	[more]
A0A0A0LPM6	1.0e-28	51.55	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1	[more]

BLAST of MS001325 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32280.1	5.6e-11	33.09	indole-3-acetic acid inducible 29	[more]
AT1G04250.1	1.5e-08	38.16	AUX/IAA transcriptional regulator family protein	[more]
AT4G14550.1	2.4e-06	29.05	indole-3-acetic acid inducible 14	[more]
AT2G22670.1	1.2e-05	36.00	indoleacetic acid-induced protein 8	[more]
AT2G22670.2	1.2e-05	36.00	indoleacetic acid-induced protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 55..151 e-value: 1.8E-17 score: 64.0
None	No IPR available	GENE3D	3.10.20.90		coord: 111..151 e-value: 1.2E-7 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..78
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 36..151
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 36..151
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 116..151 score: 11.967253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001325.1	MS001325.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding