MS001282 (gene) Bitter gourd (TR) v1

Overview


Name	MS001282
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glucose-signaling factor like
Location	scaffold36: 2948697 .. 2949005 (-)
RNA-Seq Expression	MS001282
Synteny	MS001282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGAAGGGTCGTGGAGAAAACGGTGCGTTTTGGGGGTGGCGGCCGCGGGCGTGGCAATGGCTCTGCAGATGGCCGGAGAAAGTGGCGCCATTGAAATGGATCCGATCACAACCCAGAAGACTATGAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGAGATTCAACTCCCTCGAGACCATTGTGCCCGAGAATCTTCCCAGGCCCTTCGCTCGCCGGAGATGGGACCCCGTCCGCCTTCCTCCGACCACCGCGCCTCGACTTCGAGCTACCCCTTCAGCCACCGCTCCTACCGGTTGCTTCTCCCTG

mRNA sequence

AACGAAGGGTCGTGGAGAAAACGGTGCGTTTTGGGGGTGGCGGCCGCGGGCGTGGCAATGGCTCTGCAGATGGCCGGAGAAAGTGGCGCCATTGAAATGGATCCGATCACAACCCAGAAGACTATGAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGAGATTCAACTCCCTCGAGACCATTGTGCCCGAGAATCTTCCCAGGCCCTTCGCTCGCCGGAGATGGGACCCCGTCCGCCTTCCTCCGACCACCGCGCCTCGACTTCGAGCTACCCCTTCAGCCACCGCTCCTACCGGTTGCTTCTCCCTG

Coding sequence (CDS)

AACGAAGGGTCGTGGAGAAAACGGTGCGTTTTGGGGGTGGCGGCCGCGGGCGTGGCAATGGCTCTGCAGATGGCCGGAGAAAGTGGCGCCATTGAAATGGATCCGATCACAACCCAGAAGACTATGAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGAGATTCAACTCCCTCGAGACCATTGTGCCCGAGAATCTTCCCAGGCCCTTCGCTCGCCGGAGATGGGACCCCGTCCGCCTTCCTCCGACCACCGCGCCTCGACTTCGAGCTACCCCTTCAGCCACCGCTCCTACCGGTTGCTTCTCCCTG

Protein sequence

NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLETIVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL

Homology

[Close]

BLAST of MS001282 vs. NCBI nr
Match: XP_022132177.1 (uncharacterized protein LOC111005099 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 3.5e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET
Sbjct: 30  NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 89

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRPFARRRWDPVRLPPTTAP+LRATPSATAPTGCFSL
Sbjct: 90  IVPENLPRPFARRRWDPVRLPPTTAPQLRATPSATAPTGCFSL 132

[Close]

BLAST of MS001282 vs. NCBI nr
Match: KAG6598839.1 (Pleiotropic drug resistance protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 67/103 (65.05%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1    NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
            N   W+KRCVLGV   GVAMALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 963  NGERWQKRCVLGV--VGVAMALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 1022

Query: 61   IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
            IVPENLPRP ARRRW+P  L P TAP+LR   +++  T CFSL
Sbjct: 1023 IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHTSSLSTRCFSL 1062

[Close]

BLAST of MS001282 vs. NCBI nr
Match: XP_022997474.1 (uncharacterized protein LOC111492380 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           N   W+KRCVLGV   GVAMALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 36  NGERWQKRCVLGV--VGVAMALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 95

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRP ARRRW+P  L P TAP+LR   +++  T CFS+
Sbjct: 96  IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHTSSLSTRCFSM 135

[Close]

BLAST of MS001282 vs. NCBI nr
Match: XP_022929729.1 (uncharacterized protein LOC111436227 [Cucurbita moschata])

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           N   W+KRCVLGV   GVA+ALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 37  NGERWQKRCVLGV--VGVAIALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 96

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRP ARRRW+P  L P TAP+LR   +++  T CFSL
Sbjct: 97  IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHTSSLSTRCFSL 136

[Close]

BLAST of MS001282 vs. NCBI nr
Match: XP_023547232.1 (uncharacterized protein LOC111806106 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26
Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           N   W+KRCVLGV   GVAMALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 37  NGERWQKRCVLGV--VGVAMALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 96

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRP ARRRW+P  L P TAP+LR    ++  T CFS+
Sbjct: 97  IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHPSSLSTRCFSM 136

[Close]

BLAST of MS001282 vs. ExPASy TrEMBL
Match: A0A6J1BT45 (uncharacterized protein LOC111005099 OS=Momordica charantia OX=3673 GN=LOC111005099 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET
Sbjct: 30  NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 89

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRPFARRRWDPVRLPPTTAP+LRATPSATAPTGCFSL
Sbjct: 90  IVPENLPRPFARRRWDPVRLPPTTAPQLRATPSATAPTGCFSL 132

[Close]

BLAST of MS001282 vs. ExPASy TrEMBL
Match: A0A6J1KBE7 (uncharacterized protein LOC111492380 OS=Cucurbita maxima OX=3661 GN=LOC111492380 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           N   W+KRCVLGV   GVAMALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 36  NGERWQKRCVLGV--VGVAMALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 95

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRP ARRRW+P  L P TAP+LR   +++  T CFS+
Sbjct: 96  IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHTSSLSTRCFSM 135

[Close]

BLAST of MS001282 vs. ExPASy TrEMBL
Match: A0A6J1EPL8 (uncharacterized protein LOC111436227 OS=Cucurbita moschata OX=3662 GN=LOC111436227 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   NEGSWRKRCVLGVAAAGVAMALQMAGESGAIEMDPITTQKTMKWSEERMCPQWRFNSLET 60
           N   W+KRCVLGV   GVA+ALQM GESG +EM  +    + KWSEERMCPQWR NSLET
Sbjct: 37  NGERWQKRCVLGV--VGVAIALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLET 96

Query: 61  IVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           IVPENLPRP ARRRW+P  L P TAP+LR   +++  T CFSL
Sbjct: 97  IVPENLPRPAARRRWEPAAL-PRTAPQLRTIHTSSLSTRCFSL 136

[Close]

BLAST of MS001282 vs. ExPASy TrEMBL
Match: A0A1S3BBI5 (uncharacterized protein LOC103488267 OS=Cucumis melo OX=3656 GN=LOC103488267 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.2e-26
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 5   WRKRCVLGVAAAGVAMALQMAGESGAIEMDPITT--QKTMKWSEERMCPQWRFNSLETIV 64
           WRKRCVLGV  AGV  AL M+GESG +EM  + +    + KWSEERMCPQWR NSLETIV
Sbjct: 41  WRKRCVLGV--AGVMTALIMSGESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIV 100

Query: 65  PENLPRPFARRRWDPVRLPPTT-APRLRATPSATAPTGCFSL 104
           PENLPRP ARRRWDP  LP T  AP+LR T +A+  T CFS+
Sbjct: 101 PENLPRPAARRRWDPAALPHTAPAPQLRTTNTASLSTRCFSM 140

[Close]

BLAST of MS001282 vs. ExPASy TrEMBL
Match: A0A5A7VGF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002860 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.5e-26
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 5   WRKRCVLGVAAAGVAMALQMAGESGAIEMDPITT--QKTMKWSEERMCPQWRFNSLETIV 64
           WRKRCVLGV  AGV  AL M+GESG +EM  + +    + KWSEERMCPQWR NSLETIV
Sbjct: 41  WRKRCVLGV--AGVMTALVMSGESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIV 100

Query: 65  PENLPRPFARRRWDPVRLPPTT-APRLRATPSATAPTGCFSL 104
           PENLPRP ARRRWDP  LP T  AP+LR T  A+  T CFS+
Sbjct: 101 PENLPRPAARRRWDPAALPHTAPAPQLRTTNRASLSTRCFSM 140

[Close]

BLAST of MS001282 vs. TAIR 10
Match: AT2G25625.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 46/114 (40.35%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 1   NEGSWRK-RC--VLGVAAAGVAMALQ---MAGESGAIEMDPITTQKT-----MKWSEERM 60
           NE   RK +C  VLGVAA  V   +Q   +A    A+   P+           +WS++R 
Sbjct: 38  NETEPRKNKCSFVLGVAATVVIGGIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRT 97

Query: 61  CPQWRFNSLETIVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           CP W  NSLETIVPENLPRP A RR +   L    AP +    +     GCFS+
Sbjct: 98  CPPWLENSLETIVPENLPRPSAHRRLELAGLAKGDAPPVGVVMTRVNRGGCFSV 151

[Close]

BLAST of MS001282 vs. TAIR 10
Match: AT2G25625.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 46/114 (40.35%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 1   NEGSWRK-RC--VLGVAAAGVAMALQ---MAGESGAIEMDPITTQKT-----MKWSEERM 60
           NE   RK +C  VLGVAA  V   +Q   +A    A+   P+           +WS++R 
Sbjct: 39  NETEPRKNKCSFVLGVAATVVIGGIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRT 98

Query: 61  CPQWRFNSLETIVPENLPRPFARRRWDPVRLPPTTAPRLRATPSATAPTGCFSL 104
           CP W  NSLETIVPENLPRP A RR +   L    AP +    +     GCFS+
Sbjct: 99  CPPWLENSLETIVPENLPRPSAHRRLELAGLAKGDAPPVGVVMTRVNRGGCFSV 152

The following BLAST results are available for this feature:

BLAST of MS001282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132177.1	3.5e-51	99.03	uncharacterized protein LOC111005099 [Momordica charantia]	[more]
KAG6598839.1	7.9e-27	65.05	Pleiotropic drug resistance protein 1, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022997474.1	1.4e-26	64.08	uncharacterized protein LOC111492380 [Cucurbita maxima]	[more]
XP_022929729.1	2.3e-26	64.08	uncharacterized protein LOC111436227 [Cucurbita moschata]	[more]
XP_023547232.1	2.3e-26	64.08	uncharacterized protein LOC111806106 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS001282 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT45	1.7e-51	99.03	uncharacterized protein LOC111005099 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1KBE7	6.6e-27	64.08	uncharacterized protein LOC111492380 OS=Cucurbita maxima OX=3661 GN=LOC111492380...	[more]
A0A6J1EPL8	1.1e-26	64.08	uncharacterized protein LOC111436227 OS=Cucurbita moschata OX=3662 GN=LOC1114362...	[more]
A0A1S3BBI5	7.2e-26	65.69	uncharacterized protein LOC103488267 OS=Cucumis melo OX=3656 GN=LOC103488267 PE=...	[more]
A0A5A7VGF0	9.5e-26	65.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MS001282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25625.2	1.9e-10	40.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G25625.1	1.9e-10	40.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..103
None	No IPR available	PANTHER	PTHR37210	EXPRESSED PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001282.1	MS001282.1	mRNA