MS001276 (gene) Bitter gourd (TR) v1

Overview


Name	MS001276
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Location	scaffold36: 2885763 .. 2885924 (-)
RNA-Seq Expression	MS001276
Synteny	MS001276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACCTTTCATCTCACTTCCAATTTTTATCTGTTAGGAGTGGGACTTCTACTTCTTCAACGTATGTGGTCTTTCCCGAGTGTTTTATTGTTTAGTATAGTTATGATTAGTAATTATATCTATCAATATGTATGTTCTTGGATTATCAATAATGACTTTTCT

mRNA sequence

CATACCTTTCATCTCACTTCCAATTTTTATCTGTTAGGAGTGGGACTTCTACTTCTTCAACGTATGTGGTCTTTCCCGAGTGTTTTATTGTTTAGTATAGTTATGATTAGTAATTATATCTATCAATATGTATGTTCTTGGATTATCAATAATGACTTTTCT

Coding sequence (CDS)

CATACCTTTCATCTCACTTCCAATTTTTATCTGTTAGGAGTGGGACTTCTACTTCTTCAACGTATGTGGTCTTTCCCGAGTGTTTTATTGTTTAGTATAGTTATGATTAGTAATTATATCTATCAATATGTATGTTCTTGGATTATCAATAATGACTTTTCT

Protein sequence

HTFHLTSNFYLLGVGLLLLQRMWSFPSVLLFSIVMISNYIYQYVCSWIINNDFS

Homology

[Close]

BLAST of MS001276 vs. NCBI nr
Match: YP_009751868.1 (NADH dehydrogenase subunit F [Indofevillea khasiana] >QIT04601.1 NADH dehydrogenase subunit F [Indofevillea khasiana])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. NCBI nr
Match: YP_009753931.1 (NADH dehydrogenase subunit F [Trichosanthes lobata] >QIT05879.1 NADH dehydrogenase subunit F [Trichosanthes lobata])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 39/62 (62.90%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           S+YIYQYV SWIINND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSSYIYQYVWSWIINND 80

[Close]

BLAST of MS001276 vs. NCBI nr
Match: QJS52315.1 (NADH-plastoquinone oxidoreductase subunit 5 [Indofevillea khasiana])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. NCBI nr
Match: YP_009738250.1 (NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase subunit 5 [Siraitia siamensis])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. NCBI nr
Match: YP_009456109.1 (NADH dehydrogenase subunit 5 [Momordica charantia] >AUJ21876.1 NADH dehydrogenase subunit 5 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy Swiss-Prot
Match: Q2QD43 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhF PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-08
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+R+WSFPS+LL SIVMI           ++YIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRLWSFPSILLLSIVMIFAVYLSIDQINTSYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy Swiss-Prot
Match: Q32539 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa OX=4236 GN=ndhF PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-08
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+G+GLLL       L+RMWSF SVLL SIVMI           S+Y+YQYV SWIINND
Sbjct: 21 LIGLGLLLFPTATKSLRRMWSFQSVLLLSIVMIFSMNLSIQQINSSYVYQYVWSWIINND 80

[Close]

BLAST of MS001276 vs. ExPASy Swiss-Prot
Match: A0A382 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Coffea arabica OX=13443 GN=ndhF PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-07
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSF SVLL +IVMI           SN IYQYV SWIINND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFQSVLLLTIVMIFSINLSIQQINSNSIYQYVWSWIINND 80

[Close]

BLAST of MS001276 vs. ExPASy Swiss-Prot
Match: Q9MVL6 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscus arboreus OX=93788 GN=ndhF PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-07
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+G+GLLL       L+RMW+FP++LL SIVMI            +YIYQYV SW INND
Sbjct: 21 LIGIGLLLFPTATKNLRRMWAFPNILLLSIVMIFSIDLSIQQINGSYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy Swiss-Prot
Match: Q9TLA3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ligustrum vulgare OX=13597 GN=ndhF PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-07
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMW+FPS+LL SIVMI           S+ IYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWAFPSILLLSIVMIFSINLSIQQIDSSCIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy TrEMBL
Match: A0A6C0UCC8 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX=2695833 GN=ndhF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy TrEMBL
Match: A0A6M4SQ01 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Indofevillea khasiana OX=383665 GN=ndhF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy TrEMBL
Match: A0A6H0EQP7 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Indofevillea khasiana OX=383665 GN=ndhF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

[Close]

BLAST of MS001276 vs. ExPASy TrEMBL
Match: A0A6H0EWF8 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=ndhF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 39/62 (62.90%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           S+YIYQYV SWIINND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSSYIYQYVWSWIINND 80

[Close]

BLAST of MS001276 vs. ExPASy TrEMBL
Match: A0A2I6C056 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Momordica charantia OX=3673 GN=ndhF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 39/62 (62.90%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 11 LLGVGLLL-------LQRMWSFPSVLLFSIVMI-----------SNYIYQYVCSWIINND 55
          L+GVGLLL       L+RMWSFPSVLL SIVMI           SNYIYQYV SW INND
Sbjct: 21 LIGVGLLLFPTATKNLRRMWSFPSVLLLSIVMIFSVYLSIDQINSNYIYQYVWSWTINND 80

The following BLAST results are available for this feature:

BLAST of MS001276 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751868.1	2.4e-06	62.90	NADH dehydrogenase subunit F [Indofevillea khasiana] >QIT04601.1 NADH dehydrogen...	[more]
YP_009753931.1	2.4e-06	62.90	NADH dehydrogenase subunit F [Trichosanthes lobata] >QIT05879.1 NADH dehydrogena...	[more]
QJS52315.1	2.4e-06	62.90	NADH-plastoquinone oxidoreductase subunit 5 [Indofevillea khasiana]	[more]
YP_009738250.1	2.4e-06	62.90	NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase...	[more]
YP_009456109.1	2.4e-06	62.90	NADH dehydrogenase subunit 5 [Momordica charantia] >AUJ21876.1 NADH dehydrogenas...	[more]

BLAST of MS001276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD43	7.7e-08	56.45	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q32539	7.7e-08	58.06	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa OX=423...	[more]
A0A382	1.7e-07	59.68	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Coffea arabica OX=134...	[more]
Q9MVL6	2.9e-07	53.23	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscu...	[more]
Q9TLA3	3.8e-07	56.45	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ligustrum vulgare OX=...	[more]

BLAST of MS001276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6C0UCC8	1.1e-06	62.90	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX...	[more]
A0A6M4SQ01	1.1e-06	62.90	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Indofevillea khasiana...	[more]
A0A6H0EQP7	1.1e-06	62.90	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Indofevillea khasiana...	[more]
A0A6H0EWF8	1.1e-06	62.90	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Trichosanthes lobata ...	[more]
A0A2I6C056	1.1e-06	62.90	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Momordica charantia O...	[more]

BLAST of MS001276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001276.1	MS001276.1	mRNA