MS001262 (gene) Bitter gourd (TR) v1

Overview


Name	MS001262
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA helicase
Location	scaffold36: 2748275 .. 2748429 (-)
RNA-Seq Expression	MS001262
Synteny	MS001262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGAAGGGATTTTGAGATGGATGTACAAATGAAGGACGAAAAGAACATGGAAGAGGAAGATAATGTTGAATCTGAAAGATTTTTCCGTACAAGGGAAAGGCTTCTGCCCTTGACGAAAAGTTGGAGAAATCAAGGCTTGCTGAAGCCAAGCCC

mRNA sequence

CAGAGAAGGGATTTTGAGATGGATGTACAAATGAAGGACGAAAAGAACATGGAAGAGGAAGATAATGTTGAATCTAAGATTTTTCCGTACAAGGGAAAGGCTTCTGCCCTTGACGAAAAGTTGGAGAAATCAAGGCTTGCTGAAGCCAAGCCC

Coding sequence (CDS)

CAGAGAAGGGATTTTGAGATGGATGTACAAATGAAGGACGAAAAGAACATGGAAGAGGAAGATAATGTTGAATCTAAGATTTTTCCGTACAAGGGAAAGGCTTCTGCCCTTGACGAAAAGTTGGAGAAATCAAGGCTTGCTGAAGCCAAGCCC

Protein sequence

QRRDFEMDVQMKDEKNMEEEDNVESKIFPYKGKASALDEKLEKSRLAEAKP

Homology

[Close]

BLAST of MS001262 vs. NCBI nr
Match: XP_038885065.1 (DEAD-box ATP-dependent RNA helicase 35 [Benincasa hispida] >XP_038885066.1 DEAD-box ATP-dependent RNA helicase 35 [Benincasa hispida] >XP_038885067.1 DEAD-box ATP-dependent RNA helicase 35 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-04
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEK++EEED+                KI  +KGKASAL+E+LEKSRLAEAKP
Sbjct: 2  MDVQMKDEKSLEEEDDYVEYVPVAKRRAMEAQKILMHKGKASALEEELEKSRLAEAKP 59

[Close]

BLAST of MS001262 vs. NCBI nr
Match: XP_022148436.1 (DEAD-box ATP-dependent RNA helicase 35 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEKN+EEED                 KI   KGKASAL+E+LEKSRLAEAKP
Sbjct: 1  MDVQMKDEKNIEEEDEYVEYVPVAKRRALEAQKILMRKGKASALEEELEKSRLAEAKP 58

[Close]

BLAST of MS001262 vs. NCBI nr
Match: XP_008461142.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Cucumis melo] >XP_008461143.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Cucumis melo] >KAA0058735.1 DEAD-box ATP-dependent RNA helicase 35 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEK++EEED+                KI   KGKASAL+E+LEKSRLAEAKP
Sbjct: 1  MDVQMKDEKSLEEEDDYVEYVPVAKRRAMEAQKILMRKGKASALEEELEKSRLAEAKP 58

[Close]

BLAST of MS001262 vs. ExPASy TrEMBL
Match: A0A6J1D5D5 (RNA helicase OS=Momordica charantia OX=3673 GN=LOC111017080 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEKN+EEED                 KI   KGKASAL+E+LEKSRLAEAKP
Sbjct: 1  MDVQMKDEKNIEEEDEYVEYVPVAKRRALEAQKILMRKGKASALEEELEKSRLAEAKP 58

[Close]

BLAST of MS001262 vs. ExPASy TrEMBL
Match: A0A1S3CDK5 (RNA helicase OS=Cucumis melo OX=3656 GN=LOC103499818 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEK++EEED+                KI   KGKASAL+E+LEKSRLAEAKP
Sbjct: 1  MDVQMKDEKSLEEEDDYVEYVPVAKRRAMEAQKILMRKGKASALEEELEKSRLAEAKP 58

[Close]

BLAST of MS001262 vs. ExPASy TrEMBL
Match: A0A5A7UYT9 (RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002050 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 7  MDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLAEAKP 52
          MDVQMKDEK++EEED+                KI   KGKASAL+E+LEKSRLAEAKP
Sbjct: 1  MDVQMKDEKSLEEEDDYVEYVPVAKRRAMEAQKILMRKGKASALEEELEKSRLAEAKP 58

[Close]

BLAST of MS001262 vs. ExPASy TrEMBL
Match: A0A0A0K6A2 (RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G432260 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 1   QRRDFEMDVQMKDEKNMEEEDNV-------------ESKIFPYKGKASALDEKLEKSRLA 52
           QR    MDVQMKDEK++EEED                 KI   KGKASAL+E+LEKSRLA
Sbjct: 115 QREGSTMDVQMKDEKSLEEEDEYVEYVPVAKRRAMEAQKILMRKGKASALEEELEKSRLA 174

The following BLAST results are available for this feature:

BLAST of MS001262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885065.1	2.7e-04	58.62	DEAD-box ATP-dependent RNA helicase 35 [Benincasa hispida] >XP_038885066.1 DEAD-...	[more]
XP_022148436.1	3.6e-04	60.34	DEAD-box ATP-dependent RNA helicase 35 [Momordica charantia]	[more]
XP_008461142.1	8.0e-04	58.62	PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Cucumis melo] >XP_008461143.1...	[more]

BLAST of MS001262 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5D5	1.7e-04	60.34	RNA helicase OS=Momordica charantia OX=3673 GN=LOC111017080 PE=3 SV=1	[more]
A0A1S3CDK5	3.9e-04	58.62	RNA helicase OS=Cucumis melo OX=3656 GN=LOC103499818 PE=3 SV=1	[more]
A0A5A7UYT9	3.9e-04	58.62	RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002050 ...	[more]
A0A0A0K6A2	3.9e-04	56.25	RNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G432260 PE=3 SV=1	[more]

BLAST of MS001262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001262.1	MS001262.1	mRNA