MS001252 (gene) Bitter gourd (TR) v1

Overview


Name	MS001252
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H dehydrogenase subunit H
Location	scaffold36: 2666082 .. 2666213 (-)
RNA-Seq Expression	MS001252
Synteny	MS001252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGTCCCTACCGTTGTAAAATAAGAGCACCTAACTTTGCTCATTCACTAAGATTTGATTCTATGTCCAAACATCACATGCCAGGTTTGATCACCATCATAGGTAATATCGGTAAAATGGATATTTCTAGA

mRNA sequence

AATCGTCCCTACCGTTGTAAAATAAGAGCACCTAACTTTGCTCATTCACTAAGATTTGATTCTATGTCCAAACATCACATGCCAGGTTTGATCACCATCATAGGTAATATCGGTAAAATGGATATTTCTAGA

Coding sequence (CDS)

AATCGTCCCTACCGTTGTAAAATAAGAGCACCTAACTTTGCTCATTCACTAAGATTTGATTCTATGTCCAAACATCACATGCCAGGTTTGATCACCATCATAGGTAATATCGGTAAAATGGATATTTCTAGA

Protein sequence

NRPYRCKIRAPNFAHSLRFDSMSKHHMPGLITIIGNIGKMDISR

Homology

[Close]

BLAST of MS001252 vs. NCBI nr
Match: QMS45148.1 (NADH dehydrogenase subunit 7 [Gymnosiphon longistylus])

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQALDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. NCBI nr
Match: AUT20015.1 (NADH dehydrogenase subunit 7 [Oryza coarctata])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. NCBI nr
Match: XP_034585923.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 isoform X1 [Setaria viridis])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 374 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 409

[Close]

BLAST of MS001252 vs. NCBI nr
Match: ABE98776.1 (NADH dehydrogenase subunit 7 [Zea mays subsp. mays])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. NCBI nr
Match: KAG2481752.1 (hypothetical protein PVAP13_J037101 [Panicum virgatum] >PUZ39258.1 hypothetical protein GQ55_9G272700 [Panicum hallii var. hallii] >TKW38926.1 hypothetical protein SEVIR_1G145572v2 [Setaria viridis])

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
          NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 50 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 85

[Close]

BLAST of MS001252 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-07
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYR KIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 9.0e-07
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHM-PGLITIIG 36
           NRPYRCKIRAP FAH    D MSKHHM   ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIG 383

[Close]

BLAST of MS001252 vs. ExPASy Swiss-Prot
Match: Q9TC96 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea OX=31312 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-05
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHM-PGLITIIG 36
           NRPYRCKIRAP F H    D MSK+HM   ++TIIG
Sbjct: 352 NRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTIIG 387

[Close]

BLAST of MS001252 vs. ExPASy Swiss-Prot
Match: Q2RU37 (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=nuoD PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-05
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPGLITIIGNIGKMDI 43
           NRPYRCKIR+P + H    D MS+ HM  L  ++ NIG +D+
Sbjct: 346 NRPYRCKIRSPGYVHLQGLDLMSRGHM--LADVVANIGSIDV 385

[Close]

BLAST of MS001252 vs. ExPASy Swiss-Prot
Match: Q0MQG3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pongo pygmaeus OX=9600 GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-05
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPGLITIIGNIGKMDI 43
           +RPYRCKI+AP FAH    D MSK HM  L  ++  IG  DI
Sbjct: 417 SRPYRCKIKAPGFAHLASLDKMSKGHM--LADVVAIIGTQDI 456

[Close]

BLAST of MS001252 vs. ExPASy TrEMBL
Match: A0A7G4JSI8 (NAD(P)H dehydrogenase subunit H OS=Gymnosiphon longistylus OX=396667 GN=nad7 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQALDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. ExPASy TrEMBL
Match: A0A0K0YH42 (NAD(P)H dehydrogenase subunit H OS=Hordeum vulgare subsp. spontaneum OX=77009 GN=nad7 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. ExPASy TrEMBL
Match: A0A368PE93 (NAD(P)H dehydrogenase subunit H OS=Setaria italica OX=4555 GN=SETIT_1G140200v2 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 81  NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 116

[Close]

BLAST of MS001252 vs. ExPASy TrEMBL
Match: Q36813 (NAD(P)H dehydrogenase subunit H OS=Triticum aestivum OX=4565 GN=nad7 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 383

[Close]

BLAST of MS001252 vs. ExPASy TrEMBL
Match: A0A452XEE1 (NAD(P)H dehydrogenase subunit H OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYRCKIRAP FAHS   DSMSKHHMP  ++TIIG
Sbjct: 315 NRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTIIG 350

[Close]

BLAST of MS001252 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-08
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1   NRPYRCKIRAPNFAHSLRFDSMSKHHMPG-LITIIG 36
           NRPYR KIRAP  AHS   DSMSKHHMP  ++TIIG
Sbjct: 348 NRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIG 383

The following BLAST results are available for this feature:

BLAST of MS001252 vs. NCBI nr


Match Name	E-value	Identity	Description
QMS45148.1	1.9e-06	77.78	NADH dehydrogenase subunit 7 [Gymnosiphon longistylus]	[more]
AUT20015.1	2.5e-06	77.78	NADH dehydrogenase subunit 7 [Oryza coarctata]	[more]
XP_034585923.1	2.5e-06	77.78	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 isoform X1 [Setaria viridi...	[more]
ABE98776.1	2.5e-06	77.78	NADH dehydrogenase subunit 7 [Zea mays subsp. mays]	[more]
KAG2481752.1	2.5e-06	77.78	hypothetical protein PVAP13_J037101 [Panicum virgatum] >PUZ39258.1 hypothetical ...	[more]

BLAST of MS001252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36450	1.8e-07	75.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
P93306	9.0e-07	69.44	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
Q9TC96	1.7e-05	63.89	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea O...	[more]
Q2RU37	1.7e-05	50.00	NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 1117...	[more]
Q0MQG3	2.2e-05	54.76	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pongo py...	[more]

BLAST of MS001252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G4JSI8	9.4e-07	77.78	NAD(P)H dehydrogenase subunit H OS=Gymnosiphon longistylus OX=396667 GN=nad7 PE=...	[more]
A0A0K0YH42	1.2e-06	77.78	NAD(P)H dehydrogenase subunit H OS=Hordeum vulgare subsp. spontaneum OX=77009 GN...	[more]
A0A368PE93	1.2e-06	77.78	NAD(P)H dehydrogenase subunit H OS=Setaria italica OX=4555 GN=SETIT_1G140200v2 P...	[more]
Q36813	1.2e-06	77.78	NAD(P)H dehydrogenase subunit H OS=Triticum aestivum OX=4565 GN=nad7 PE=3 SV=1	[more]
A0A452XEE1	1.2e-06	77.78	NAD(P)H dehydrogenase subunit H OS=Aegilops tauschii subsp. strangulata OX=20036...	[more]

BLAST of MS001252 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	4.9e-08	72.22	NADH dehydrogenase subunit 7	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001252.1	MS001252.1	mRNA