MS001251 (gene) Bitter gourd (TR) v1

Overview


Name	MS001251
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Methionyl-tRNA synthetase
Location	scaffold36: 2664418 .. 2664615 (-)
RNA-Seq Expression	MS001251
Synteny	MS001251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTGGTGTTTGTTTGCGACGAGAACCAGAGGGTGCTGTCGAGGCAGCCAGCTCCAGGGGCTTGCCCCTTCTGTGGAGGCATGGTCCAGGCCACCGACATTCAAACCCAGTGGAGCTTCTGTTTCCTCCCTCTCTACTGGAAAACCAAACGAAAGTTATATTGCAGCATCTGCACCAGAGAATTGGTTGTCCAG

mRNA sequence

ATGTGTTTGGTGTTTGTTTGCGACGAGAACCAGAGGGTGCTGTCGAGGCAGCCAGCTCCAGGGGCTTGCCCCTTCTGTGGAGGCATGGTCCAGGCCACCGACATTCAAACCCAGTGGAGCTTCTGTTTCCTCCCTCTCTACTGGAAAACCAAACGAAAGTTATATTGCAGCATCTGCACCAGAGAATTGGTTGTCCAG

Coding sequence (CDS)

ATGTGTTTGGTGTTTGTTTGCGACGAGAACCAGAGGGTGCTGTCGAGGCAGCCAGCTCCAGGGGCTTGCCCCTTCTGTGGAGGCATGGTCCAGGCCACCGACATTCAAACCCAGTGGAGCTTCTGTTTCCTCCCTCTCTACTGGAAAACCAAACGAAAGTTATATTGCAGCATCTGCACCAGAGAATTGGTTGTCCAG

Protein sequence

MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICTRELVVQ

Homology

[Close]

BLAST of MS001251 vs. NCBI nr
Match: XP_022132278.1 (uncharacterized protein LOC111005173 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 8.1e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT
Sbjct: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60

Query: 61 RELVVQ 67
          RELVVQ
Sbjct: 61 RELVVQ 66

[Close]

BLAST of MS001251 vs. NCBI nr
Match: XP_022962063.1 (uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 uncharacterized protein LOC111491925 [Cucurbita maxima] >XP_023546190.1 uncharacterized protein LOC111805366 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 5.4e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of MS001251 vs. NCBI nr
Match: KAG7029748.1 (hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 5.4e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1   MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
           MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 72  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 131

Query: 61  RELVVQ 67
           R+LV+Q
Sbjct: 132 RQLVIQ 137

[Close]

BLAST of MS001251 vs. NCBI nr
Match: XP_038884125.1 (uncharacterized protein LOC120075047 [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 9.3e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of MS001251 vs. NCBI nr
Match: XP_008445081.1 (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCF+PLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of MS001251 vs. ExPASy TrEMBL
Match: A0A6J1BVT7 (uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005173 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT
Sbjct: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60

Query: 61 RELVVQ 67
          RELVVQ
Sbjct: 61 RELVVQ 66

[Close]

BLAST of MS001251 vs. ExPASy TrEMBL
Match: A0A6J1KC13 (uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of MS001251 vs. ExPASy TrEMBL
Match: A0A6J1HDM3 (uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC111462635 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of MS001251 vs. ExPASy TrEMBL
Match: A0A1S3BCK8 (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 54/66 (81.82%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCF+PLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RELVVQ 67
          R+LV+Q
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of MS001251 vs. ExPASy TrEMBL
Match: A0A6P3Z2S4 (uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC107405842 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCDE++RV+SRQPAPGACP+CGGMVQA D+++QW FCFLPLYWKTKRK YCS+CT
Sbjct: 1  MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 61 RELVVQ 67
          R LVVQ
Sbjct: 61 RRLVVQ 66

[Close]

BLAST of MS001251 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-20
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLVFVCD+++RV+ R  APGACP+CGG VQ  D+ +QW FCF+PL  K+KR+  CS C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RELVV 66
          + L+V
Sbjct: 61 KRLIV 65

[Close]

BLAST of MS001251 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 5.4e-19
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCLV +CDE +  L RQ APG+CP+CGG VQ  D++ +W FCF+PL +K KRK  CS C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RELVV 66
          R LV+
Sbjct: 61 RRLVL 65

[Close]

BLAST of MS001251 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-17
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60
          MCL  V  E +  L RQ APG CP+CGG V A DI+T+W FCFLPL +K KRK  CS C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RELVV 66
          R LV+
Sbjct: 61 RHLVL 65

[Close]

BLAST of MS001251 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSIC 60
          +C  F+ D+ ++V   +PA G C  CG      D++T   FCF+P+YW++ R + CS C
Sbjct: 2  VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

[Close]

BLAST of MS001251 vs. TAIR 10
Match: AT3G15534.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-08
Identity = 20/59 (33.90%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSIC 60
          +C  F+ D+ ++V   +PA G C  CG   +  D++T   FC +P+Y ++ R + CS C
Sbjct: 2  VCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

The following BLAST results are available for this feature:

BLAST of MS001251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132278.1	8.1e-33	100.00	uncharacterized protein LOC111005173 [Momordica charantia]	[more]
XP_022962063.1	5.4e-29	83.33	uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 unchar...	[more]
KAG7029748.1	5.4e-29	83.33	hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038884125.1	9.3e-29	83.33	uncharacterized protein LOC120075047 [Benincasa hispida]	[more]
XP_008445081.1	2.1e-28	81.82	PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo]	[more]

BLAST of MS001251 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVT7	3.9e-33	100.00	uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1KC13	2.6e-29	83.33	uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925...	[more]
A0A6J1HDM3	2.6e-29	83.33	uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC1114626...	[more]
A0A1S3BCK8	1.0e-28	81.82	uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=...	[more]
A0A6P3Z2S4	5.0e-28	81.82	uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC10740584...	[more]

BLAST of MS001251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10695.1	1.3e-20	58.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G57123.1	5.4e-19	56.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	1.3e-17	58.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G52855.1	2.7e-10	37.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15534.1	2.5e-08	33.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 1..66
None	No IPR available	PANTHER	PTHR33320:SF20	METHIONYL-TRNA SYNTHETASE	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001251.1	MS001251.1	mRNA