MS001238 (gene) Bitter gourd (TR) v1

Overview


Name	MS001238
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	chaperone protein dnaJ-related
Location	scaffold36: 2574416 .. 2575819 (-)
RNA-Seq Expression	MS001238
Synteny	MS001238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTTCTATGGCTCTTACGAAGATCAACCTCCTCCGATTTCCTCCATCGTCTTCCTCCCGCTCTTCCTTCAAGCCTGCGCGCTGCTCATCTCTCCAACAGGTTCAATTACAGGTATACAAAATTCATGTGCTCTCAAGGAAGCTTCAACTCTAGCGTCTTCAAACTACGCGATTCATTCTATTTCTTACTGTTTTCCAATTTTCTTCAAGGCTGACTCAACAATTGCATGTGAACCTTGTAACGGTGAAGGATGGATAGTGTGTGATTTCTGTAAAGGGCAGAAGACTAACGTGAAGGCCGAGAACAATCGTATCTACCGACGATGTCCATCTTGCAGAGCCGTAAGTAGACTGCCAACTGCTATCTTCATTAGTACAATGCCGTCGCAGTAATGCGATGAATTTGTGATAAAATTGCACGTATGCTGTCAATATTTTGATTATCTTTTACGAGACTCTCGTTTAAACGAGGATATCTGAGGTTTTTGGTATTGGTAAACGTAGAATCTTGTATAGACTCTTCTGAACTCAGAAGTGAAACGTTTTGTTTACCAAATCACTGGAGTTCCTGAATCTATTTTTACTGGCCAATATTTTTTCTCTCTATCGAATTCTGTTCTTATTTTTCTCACAGCTTCCTTGGTGTAATTCCTGATATTTTATCCACTAACACTCCATTCAGCCCCTTCTTTAAGAATTAATCAATTATACTGGCAACTAGCTTAGATTACTGTTAAGAGACATTCTAGTCGATTTTGATGATGCTAAGTTTCTTAAAACCTCTATAGCTTGGTAGAAATGTGATTTAGTAAATATTATAAGCAGAATAAGTGTTGTGAACTGGTCCATTAAACTTATCTAATATGAGTTCCCCTACCAAATAGCATACCACTGATCGAAAAGAGTTAACCAGACTTACTATATCAACCCGGTAGTTCAATAGCCTACATCATCATCTTAACGATGATGTGATCCCACAAGCGAACTTACCATTAAATCTTGGTTGAGTTAAATTTATCATCCCACTATTCTCAGAATAAGAAGTTGTTAACAACCAACTGAAGCGCATAATTCATTGAGTTTCTTTTTGATCTCTCTTTACTTGCCAATGAAAGTGTGATGAAGTACCCTGCTACTTAGCTGATATAAAACATGTAGCACTGTCGTGTTGGAGCATTTTGTGCATATATGCCCGTGAACCAGTGCTTGGTCTCTATAACTTTTGTTGTGGAGATACCTGATATCCTTTGTTCTTTTGTTTGCATATACTCGATTACTGACTTAAAAGCCTAACGAGGCACTCCAATTGTGACAGGTCGGATATGTTCTATGTTCAAAGTGCAAGGTGTTCAAGTGTGTCACTTTCCCAAACTTCAGTGACGGTTCTGATCTATCCTTC

mRNA sequence

ATGGCGATTTCTATGGCTCTTACGAAGATCAACCTCCTCCGATTTCCTCCATCGTCTTCCTCCCGCTCTTCCTTCAAGCCTGCGCGCTGCTCATCTCTCCAACAGGTTCAATTACAGGCTGACTCAACAATTGCATGTGAACCTTGTAACGGTGAAGGATGGATAGTGTGTGATTTCTGTAAAGGGCAGAAGACTAACGTGAAGGCCGAGAACAATCGTATCTACCGACGATGTCCATCTTGCAGAGCCGTCGGATATGTTCTATGTTCAAAGTGCAAGGTGTTCAAGTGTGTCACTTTCCCAAACTTCAGTGACGGTTCTGATCTATCCTTC

Coding sequence (CDS)

ATGGCGATTTCTATGGCTCTTACGAAGATCAACCTCCTCCGATTTCCTCCATCGTCTTCCTCCCGCTCTTCCTTCAAGCCTGCGCGCTGCTCATCTCTCCAACAGGTTCAATTACAGGCTGACTCAACAATTGCATGTGAACCTTGTAACGGTGAAGGATGGATAGTGTGTGATTTCTGTAAAGGGCAGAAGACTAACGTGAAGGCCGAGAACAATCGTATCTACCGACGATGTCCATCTTGCAGAGCCGTCGGATATGTTCTATGTTCAAAGTGCAAGGTGTTCAAGTGTGTCACTTTCCCAAACTTCAGTGACGGTTCTGATCTATCCTTC

Protein sequence

MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFCKGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF

Homology

[Close]

BLAST of MS001238 vs. NCBI nr
Match: XP_022131716.1 (uncharacterized protein LOC111004819 isoform X1 [Momordica charantia])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 60
           MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC
Sbjct: 17  MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 76

Query: 61  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDL 110
           KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG+ +
Sbjct: 77  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGAKI 125

[Close]

BLAST of MS001238 vs. NCBI nr
Match: XP_022131717.1 (uncharacterized protein LOC111004819 isoform X2 [Momordica charantia])

HSP 1 Score: 224.6 bits (571), Expect = 4.4e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 60
           MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC
Sbjct: 17  MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 76

Query: 61  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG 107
           KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG
Sbjct: 77  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG 122

[Close]

BLAST of MS001238 vs. NCBI nr
Match: XP_022962550.1 (uncharacterized protein LOC111462947 [Cucurbita moschata])

HSP 1 Score: 194.5 bits (493), Expect = 4.8e-46
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 3   ISMALTKINLLRFPP--SSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I+M LTKINL+R  P  S+SSRSSF P RCSS+QQVQ+  DSTIACEPCNG+GWIVCDFC
Sbjct: 4   IAMTLTKINLVRISPSRSTSSRSSFNPTRCSSIQQVQV--DSTIACEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNR+YRRCPSCRAVGYVLCSKCKVFKCVTFPN+SDG DLSF
Sbjct: 64  EGQKTNVKAENNRVYRRCPSCRAVGYVLCSKCKVFKCVTFPNYSDGVDLSF 112

[Close]

BLAST of MS001238 vs. NCBI nr
Match: XP_022996808.1 (uncharacterized protein LOC111491935 [Cucurbita maxima] >XP_022996809.1 uncharacterized protein LOC111491935 [Cucurbita maxima] >XP_022996810.1 uncharacterized protein LOC111491935 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 3   ISMALTKINLLRFPP--SSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I+M LTKINL+R  P  SSSSRSS  P RCSS+QQVQ+  DSTIACEPCNG+GWIVCDFC
Sbjct: 4   IAMTLTKINLVRISPSLSSSSRSSLNPTRCSSIQQVQV--DSTIACEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNR+YRRCPSCRAVGYVLCSKCKVFKCVTFPN+SDG DLSF
Sbjct: 64  EGQKTNVKAENNRVYRRCPSCRAVGYVLCSKCKVFKCVTFPNYSDGVDLSF 112

[Close]

BLAST of MS001238 vs. NCBI nr
Match: XP_038885868.1 (uncharacterized protein LOC120076171 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 90/111 (81.08%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 3   ISMALTKINLLRFPPS--SSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I++ LT+INL+R  PS  SSSRSSF   RCSS+QQVQ+  DSTIACEPCNG+GWIVCDFC
Sbjct: 4   IAVTLTQINLVRISPSQFSSSRSSFNSVRCSSIQQVQV--DSTIACEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPN+SDG++LSF
Sbjct: 64  EGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNYSDGAELSF 112

[Close]

BLAST of MS001238 vs. ExPASy TrEMBL
Match: A0A6J1BQ99 (uncharacterized protein LOC111004819 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004819 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 60
           MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC
Sbjct: 17  MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 76

Query: 61  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDL 110
           KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG+ +
Sbjct: 77  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGAKI 125

[Close]

BLAST of MS001238 vs. ExPASy TrEMBL
Match: A0A6J1BRT7 (uncharacterized protein LOC111004819 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004819 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 60
           MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC
Sbjct: 17  MAISMALTKINLLRFPPSSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 76

Query: 61  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG 107
           KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG
Sbjct: 77  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDG 122

[Close]

BLAST of MS001238 vs. ExPASy TrEMBL
Match: A0A6J1HFF6 (uncharacterized protein LOC111462947 OS=Cucurbita moschata OX=3662 GN=LOC111462947 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 3   ISMALTKINLLRFPP--SSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I+M LTKINL+R  P  S+SSRSSF P RCSS+QQVQ+  DSTIACEPCNG+GWIVCDFC
Sbjct: 4   IAMTLTKINLVRISPSRSTSSRSSFNPTRCSSIQQVQV--DSTIACEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNR+YRRCPSCRAVGYVLCSKCKVFKCVTFPN+SDG DLSF
Sbjct: 64  EGQKTNVKAENNRVYRRCPSCRAVGYVLCSKCKVFKCVTFPNYSDGVDLSF 112

[Close]

BLAST of MS001238 vs. ExPASy TrEMBL
Match: A0A6J1K9Q6 (uncharacterized protein LOC111491935 OS=Cucurbita maxima OX=3661 GN=LOC111491935 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.2e-46
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 3   ISMALTKINLLRFPP--SSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I+M LTKINL+R  P  SSSSRSS  P RCSS+QQVQ+  DSTIACEPCNG+GWIVCDFC
Sbjct: 4   IAMTLTKINLVRISPSLSSSSRSSLNPTRCSSIQQVQV--DSTIACEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNR+YRRCPSCRAVGYVLCSKCKVFKCVTFPN+SDG DLSF
Sbjct: 64  EGQKTNVKAENNRVYRRCPSCRAVGYVLCSKCKVFKCVTFPNYSDGVDLSF 112

[Close]

BLAST of MS001238 vs. ExPASy TrEMBL
Match: A0A1S3BCN0 (uncharacterized protein LOC103488212 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488212 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.8e-45
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 3   ISMALTKINLLRFPP--SSSSRSSFKPARCSSLQQVQLQADSTIACEPCNGEGWIVCDFC 62
           I+  LTKINL+ F P  SSSSRSSF  ARCS +QQVQ+  DSTI CEPCNG+GWIVCDFC
Sbjct: 4   IATTLTKINLVGFSPPRSSSSRSSFSSARCSPIQQVQV--DSTIECEPCNGKGWIVCDFC 63

Query: 63  KGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           +GQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNF+DG+DLSF
Sbjct: 64  EGQKTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFNDGADLSF 112

[Close]

BLAST of MS001238 vs. TAIR 10
Match: AT2G24395.1 (chaperone protein dnaJ-related )

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-34
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 16  PPSSSSRSS----FKPARCSSLQQVQLQAD--------STIACEPCNGEGWIVCDFCKGQ 75
           P SS+SR      FKP RC  LQ+ + Q D        + I CE CNG+GW++CDFCKGQ
Sbjct: 25  PASSTSRRKQRRLFKPFRCVPLQEQEPQLDQSQQGDDNAVILCEDCNGKGWLLCDFCKGQ 84

Query: 76  KTNVKAENNRIYRRCPSCRAVGYVLCSKCKVFKCVTFPNFSDGSDLSF 112
           KTNVK+ENNRIYRRCP+C+AVG+VLC KCKVFKCVTFPN  DG +L F
Sbjct: 85  KTNVKSENNRIYRRCPTCKAVGFVLCRKCKVFKCVTFPNSEDGDELLF 132

The following BLAST results are available for this feature:

BLAST of MS001238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131716.1	2.0e-55	97.25	uncharacterized protein LOC111004819 isoform X1 [Momordica charantia]	[more]
XP_022131717.1	4.4e-55	100.00	uncharacterized protein LOC111004819 isoform X2 [Momordica charantia]	[more]
XP_022962550.1	4.8e-46	82.88	uncharacterized protein LOC111462947 [Cucurbita moschata]	[more]
XP_022996808.1	1.1e-45	82.88	uncharacterized protein LOC111491935 [Cucurbita maxima] >XP_022996809.1 uncharac...	[more]
XP_038885868.1	1.6e-44	81.08	uncharacterized protein LOC120076171 [Benincasa hispida]	[more]

BLAST of MS001238 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ99	9.5e-56	97.25	uncharacterized protein LOC111004819 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BRT7	2.1e-55	100.00	uncharacterized protein LOC111004819 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HFF6	2.3e-46	82.88	uncharacterized protein LOC111462947 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A6J1K9Q6	5.2e-46	82.88	uncharacterized protein LOC111491935 OS=Cucurbita maxima OX=3661 GN=LOC111491935...	[more]
A0A1S3BCN0	9.8e-45	81.98	uncharacterized protein LOC103488212 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS001238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24395.1	1.2e-34	62.04	chaperone protein dnaJ-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 36..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001238.1	MS001238.1	mRNA