MS001191 (gene) Bitter gourd (TR) v1

Overview
NameMS001191
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolynucleotide adenylyltransferase
Locationscaffold36: 2182677 .. 2182935 (+)
RNA-Seq ExpressionMS001191
SyntenyMS001191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGGCATACGGTTCAGTTCCAACATGCTGTTTGTTGCCCTTCAATATGGGAATCCGAGGGAGAGCTGTTGTAAAAAAAACATGAACAAATAAGTGCATGCGATGCTTTGAAGATTCTGGTGCATTATATGTTAGATGCCTGGTGTTGCTGTCACAGCTTCCCATTTCTAAAAGGCGGGAGATTGTTTGTGAAGAAACTGCTCATGAGGTCGTTTCTGGGACGAATCTTTTCTACACTTTTGAGATCAATCTTACAGTT

mRNA sequence

CAAGGCATACGGTTCAGTTCCAACATGCTGTTTGTTGCCCTTCAATATGGGAATCCGAGGGAGAGCTGTTGTAAAAAAAACATGAACAAATGCATGCGATGCTTTGAAGATTCTGGTGCATTATATGTTAGATGCCTGGTGTTGCTGTCACAGCTTCCCATTTCTAAAAGGCGGGAGATTGTTTGTGAAGAAACTGCTCATGAGGTCGTTTCTGGGACGAATCTTTTCTACACTTTTGAGATCAATCTTACAGTT

Coding sequence (CDS)

CAAGGCATACGGTTCAGTTCCAACATGCTGTTTGTTGCCCTTCAATATGGGAATCCGAGGGAGAGCTGTTGTAAAAAAAACATGAACAAATGCATGCGATGCTTTGAAGATTCTGGTGCATTATATGTTAGATGCCTGGTGTTGCTGTCACAGCTTCCCATTTCTAAAAGGCGGGAGATTGTTTGTGAAGAAACTGCTCATGAGGTCGTTTCTGGGACGAATCTTTTCTACACTTTTGAGATCAATCTTACAGTT

Protein sequence

QGIRFSSNMLFVALQYGNPRESCCKKNMNKCMRCFEDSGALYVRCLVLLSQLPISKRREIVCEETAHEVVSGTNLFYTFEINLTV
Homology
[Close]
BLAST of MS001191 vs. NCBI nr
Match: KGN62795.1 (hypothetical protein Csa_022232 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-18
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 2  GIRFSSNMLFVALQYGNPRESCCKKNMNKCMRCFEDSGALYVRCLVL-LSQLPISKRREI 61
          GI FSSNMLF+ L +GNP++ C  KN+  CM+CFE+SGA + RCL L  SQLPI +R EI
Sbjct: 6  GIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIFRRWEI 65

Query: 62 VCEETAHEVVSGTNLFYTFE-INLTV 86
          +CE TAH VVSG N  YT +  NL V
Sbjct: 66 LCEGTAHAVVSGVNAIYTSKTFNLAV 91

[Close]
BLAST of MS001191 vs. NCBI nr
Match: KAA0065055.1 (nuclear poly(A) polymerase 4 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 14  LQY--GNPRESCCKKNMNKCMRCFEDSGALYVRCLVL-LSQLPISKRREIVCEETAHEVV 73
           LQY  G    S  +K + +CM+CFE+SGAL+ RCL    SQLPI +R EI+CE TA  VV
Sbjct: 827 LQYAMGIQSSSVGEKTLKRCMQCFEESGALHFRCLAFEPSQLPIFRRWEILCEGTARVVV 886

Query: 74  SGTNLFY 78
           SG N  Y
Sbjct: 887 SGANAIY 893

[Close]
BLAST of MS001191 vs. ExPASy TrEMBL
Match: A0A0A0LLH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373390 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 2  GIRFSSNMLFVALQYGNPRESCCKKNMNKCMRCFEDSGALYVRCLVL-LSQLPISKRREI 61
          GI FSSNMLF+ L +GNP++ C  KN+  CM+CFE+SGA + RCL L  SQLPI +R EI
Sbjct: 6  GIWFSSNMLFIVLDHGNPKQQCWGKNLKDCMQCFEESGAFHFRCLALEPSQLPIFRRWEI 65

Query: 62 VCEETAHEVVSGTNLFYTFE-INLTV 86
          +CE TAH VVSG N  YT +  NL V
Sbjct: 66 LCEGTAHAVVSGVNAIYTSKTFNLAV 91

[Close]
BLAST of MS001191 vs. ExPASy TrEMBL
Match: A0A5A7VGN2 (Polynucleotide adenylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003840 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 14  LQY--GNPRESCCKKNMNKCMRCFEDSGALYVRCLVL-LSQLPISKRREIVCEETAHEVV 73
           LQY  G    S  +K + +CM+CFE+SGAL+ RCL    SQLPI +R EI+CE TA  VV
Sbjct: 827 LQYAMGIQSSSVGEKTLKRCMQCFEESGALHFRCLAFEPSQLPIFRRWEILCEGTARVVV 886

Query: 74  SGTNLFY 78
           SG N  Y
Sbjct: 887 SGANAIY 893

The following BLAST results are available for this feature:
BLAST of MS001191 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62795.13.3e-1859.30hypothetical protein Csa_022232 [Cucumis sativus][more]
KAA0065055.11.5e-0753.73nuclear poly(A) polymerase 4 isoform X3 [Cucumis melo var. makuwa][more]
BLAST of MS001191 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS001191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLH31.6e-1859.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373390 PE=4 SV=1[more]
A0A5A7VGN27.3e-0853.73Polynucleotide adenylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of MS001191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001191.1MS001191.1mRNA